EWM24350.1, cds6323 (CDS) Nannochloropsis gaditana

Overview
NameEWM24350.1
Unique Namecds6323
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:285834..286739 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24350.1
Producttranscription factor tfiiib component
Orig transcript idgnl|cribi|Naga_101773g1.5215.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:285834..286739 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006359regulation of transcription by RNA polymerase III
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000126transcription factor TFIIIB complex
Vocabulary: Molecular Function
TermDefinition
GO:0001026obsolete TFIIIB-type transcription factor activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR030701TFIIIB_B''
IPR009057Homeodomain-like
IPR001005SANT/Myb
Homology
BLAST of EWM24350.1 vs. NCBI_GenBank
Match: gi|585105745|gb|EWM24350.1| (transcription factor tfiiib component [Nannochloropsis gaditana])

HSP 1 Score: 585.104 bits (1507), Expect = 0.000e+0
Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 0
Query:    1 MSGGKDEAVGASHAPATAGEEGTVAGRGRTAAVGRTSGISTRQGGREKARDAGPARSGREAEEAGRGKGEGGRGRGGGKGEEGRGRGGGKKGGRGDTHVGADAVSPFPLPAASSSSKAGSGSSGAGATAPPPSGPSTAPSEAVGRQGEGAGGEGPAAAVVVAVGPRVELVDGQIVINQKSLEVVARPEDGGEGAMEEVTEDPQQAATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEKQHGVLVYKYLDSTQPLPVLEAGVHDGRGEGSGEGDD 301
            MSGGKDEAVGASHAPATAGEEGTVAGRGRTAAVGRTSGISTRQGGREKARDAGPARSGREAEEAGRGKGEGGRGRGGGKGEEGRGRGGGKKGGRGDTHVGADAVSPFPLPAASSSSKAGSGSSGAGATAPPPSGPSTAPSEAVGRQGEGAGGEGPAAAVVVAVGPRVELVDGQIVINQKSLEVVARPEDGGEGAMEEVTEDPQQAATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEKQHGVLVYKYLDSTQPLPVLEAGVHDGRGEGSGEGDD
Sbjct:    1 MSGGKDEAVGASHAPATAGEEGTVAGRGRTAAVGRTSGISTRQGGREKARDAGPARSGREAEEAGRGKGEGGRGRGGGKGEEGRGRGGGKKGGRGDTHVGADAVSPFPLPAASSSSKAGSGSSGAGATAPPPSGPSTAPSEAVGRQGEGAGGEGPAAAVVVAVGPRVELVDGQIVINQKSLEVVARPEDGGEGAMEEVTEDPQQAATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEKQHGVLVYKYLDSTQPLPVLEAGVHDGRGEGSGEGDD 301          
BLAST of EWM24350.1 vs. NCBI_GenBank
Match: gi|390335344|ref|XP_003724124.1| (PREDICTED: transcription factor TFIIIB component B'' homolog isoform X1 [Strongylocentrotus purpuratus] >gi|780156307|ref|XP_011682418.1| PREDICTED: transcription factor TFIIIB component B'' homolog isoform X2 [Strongylocentrotus purpuratus])

HSP 1 Score: 91.6633 bits (226), Expect = 5.597e-17
Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 0
Query:  161 VAVGPRVELVDGQIVINQKSLEVVARPEDGGEGAMEEVTEDPQQAATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEKQH 267
            V +GP     DG+I+I+QKSL V A P    + A  EV  +     TY+SF +R R   WT+ +TR FY AL   GTDFTT+ ++  +  R RA++K KFKKEE+Q+
Sbjct:  370 VKIGP-----DGEIIIDQKSLYVEASPAKTFDLADSEVVHEDSSHTTYSSFVTRKRTATWTEKDTRRFYIALSAVGTDFTTINAMFPS--RTRAEIKRKFKKEERQN 469          
BLAST of EWM24350.1 vs. NCBI_GenBank
Match: gi|971518359|dbj|GAQ79823.1| (hypothetical protein KFL_000390120 [Klebsormidium nitens])

HSP 1 Score: 90.8929 bits (224), Expect = 6.455e-17
Identity = 47/125 (37.60%), Postives = 72/125 (57.60%), Query Frame = 0
Query:  160 VVAVGPRVELVDGQIVINQKSLEVVARPEDGGEGAMEEVTEDPQQAATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEKQH-----GVLVYKYLDSTQ 279
            V A+ P++ +VDGQIV++Q+SL   A+  +          E+       N++++R    RWTDA+T +FY+ALRQ GTDFTT+  L  +  R R Q+KNK+  E++ H       L +K  DS+ 
Sbjct:  218 VRALAPQIRVVDGQIVVDQQSLTASAQASNPVVSHSYRRVEESGSRLNSNTYSNRKPTKRWTDADTVVFYKALRQFGTDFTTIQKLFPS--RSRHQIKNKYLNEDRHHPKAIEAALNHKSKDSSH 340          
BLAST of EWM24350.1 vs. NCBI_GenBank
Match: gi|1210531522|dbj|GAX09878.1| (transcription factor TFIIIB component B'' [Fistulifera solaris])

HSP 1 Score: 90.1225 bits (222), Expect = 1.135e-16
Identity = 54/116 (46.55%), Postives = 75/116 (64.66%), Query Frame = 0
Query:  164 GPRVELVDGQIVINQKSLEVVARPEDGGEGAMEEVTEDPQQA---ATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEKQHGVLVYKYLD 276
            GP V++V+G+IV+ + S+ V+ R   G E A   V E+ Q A   AT +SFT+R ++ RWT  +TRLFYQALRQ GTDF TM +  F  +R R QLK K++ E  ++  L+ K LD
Sbjct:  209 GPVVQIVNGEIVLQESSV-VINRANRGDEDA-SVVEEEAQLAVVGATAHSFTNRNKSQRWTADQTRLFYQALRQVGTDFGTMEA-FFQEKRTRKQLKRKYQAELIRNPRLIEKALD 321          
BLAST of EWM24350.1 vs. NCBI_GenBank
Match: gi|1176124672|ref|XP_020601139.1| (uncharacterized protein LOC110040264 [Orbicella faveolata])

HSP 1 Score: 90.5077 bits (223), Expect = 1.345e-16
Identity = 50/123 (40.65%), Postives = 74/123 (60.16%), Query Frame = 0
Query:  162 AVGPRVELV-DGQIVINQKSLEVVARPEDGGEGAMEEVTEDPQQAATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEKQHGVLVYKYLDSTQPLPV 283
            AV PRV+L  DG I+++++SL +   PE+  + +  E+  +   A ++ ++    +  RWT  ET+ FY+AL Q GTDF+ M   LF  R+ R +LK KFK+EEKQH  LV K L    P+ V
Sbjct:  451 AVAPRVKLAADGSIILDEESLVIPKSPENTLDDS--EILYEDADAVSFGAYLKHRKVERWTLEETQKFYKALSQVGTDFSLMGP-LFPNRK-RRELKAKFKREEKQHRSLVEKALRLRNPIDV 569          
BLAST of EWM24350.1 vs. NCBI_GenBank
Match: gi|1210526752|dbj|GAX14400.1| (transcription factor TFIIIB component B'' [Fistulifera solaris])

HSP 1 Score: 88.1965 bits (217), Expect = 4.616e-16
Identity = 53/116 (45.69%), Postives = 74/116 (63.79%), Query Frame = 0
Query:  164 GPRVELVDGQIVINQKSLEVVARPEDGGEGAMEEVTEDPQQA---ATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEKQHGVLVYKYLD 276
            GP V++V+G+IV+ + S+ V+ R     E A   V E+ Q A   AT +SFT+R ++ RWT  +TRLFYQALRQ GTDF TM +  F  +R R QLK K++ E  ++  L+ K LD
Sbjct:  192 GPVVQIVNGEIVLQESSV-VINRANRADEDA-SVVEEEAQLAVVGATAHSFTNRNKSQRWTADQTRLFYQALRQVGTDFGTMEA-FFQEKRTRKQLKRKYQAELIRNPRLIEKALD 304          
BLAST of EWM24350.1 vs. NCBI_GenBank
Match: gi|1005963634|ref|XP_015790027.1| (PREDICTED: transcription factor TFIIIB component B'' homolog [Tetranychus urticae])

HSP 1 Score: 88.1965 bits (217), Expect = 5.718e-16
Identity = 46/116 (39.66%), Postives = 70/116 (60.34%), Query Frame = 0
Query:  162 AVGPRVEL-VDGQIVINQKSLEVVARPEDGGEGAMEEVTEDPQQ-AATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEKQHGVLVYKYL 275
            ++GPRV++  DG+++I+++SL V+ +P+        E  E+P     TY+SF  R    RWT  ET  FY AL   G DF+ M++L F G+R R  LKNKF++E K +  ++ K L
Sbjct:  315 SIGPRVKVGPDGELIIDEESL-VIKKPK----PVERETIEEPAYGKTTYSSFRKRPPTVRWTKTETIEFYTALNLIGPDFSLMSNLFFNGKRSRTDLKNKFRRENKLNKTVIDKAL 425          
BLAST of EWM24350.1 vs. NCBI_GenBank
Match: gi|1005964308|ref|XP_015790299.1| (PREDICTED: transcription factor TFIIIB component B'' homolog [Tetranychus urticae])

HSP 1 Score: 87.8113 bits (216), Expect = 6.920e-16
Identity = 46/116 (39.66%), Postives = 70/116 (60.34%), Query Frame = 0
Query:  162 AVGPRVEL-VDGQIVINQKSLEVVARPEDGGEGAMEEVTEDPQQ-AATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEKQHGVLVYKYL 275
            ++GPRV++  DG+++I+++SL V+ +P+        E  E+P     TY+SF  R    RWT  ET  FY AL   G DF+ M++L F G+R R  LKNKF++E K +  ++ K L
Sbjct:  315 SIGPRVKVGPDGELIIDEESL-VIKKPK----PVERETIEEPAYGKTTYSSFRKRPPTVRWTKTETIEFYTALNLIGPDFSLMSNLFFNGKRSRTDLKNKFRRENKLNKTVIDKAL 425          
BLAST of EWM24350.1 vs. NCBI_GenBank
Match: gi|585711021|ref|XP_006824662.1| (PREDICTED: transcription factor TFIIIB component B'' homolog, partial [Saccoglossus kowalevskii])

HSP 1 Score: 85.1149 bits (209), Expect = 8.904e-15
Identity = 54/150 (36.00%), Postives = 73/150 (48.67%), Query Frame = 0
Query:  134 GPSTAPSEAVGRQGEGAGGEGPAAAVVVAVGPRVELV-DGQIVINQKSLEVVARPEDGGEGAMEEVTEDPQQAATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEK------QHGVLVYKYLD 276
            G    P      + E    EG  A  V    P+V +  DG IV+N+ SL V A P    +    EV  +     TY SF  +T  + WTD ET  FY+AL   GTDFT + ++L    R R ++KNKFKKEE+       H + + K+ D
Sbjct:   72 GKDNTPENEENVEKEAVEEEGDNAMPV----PQVRISEDGTIVVNEASLLVEASPPKTHDHCDSEVVYEKASYTTYASFKKKTHTSAWTDRETNKFYKALSTVGTDFTLINAIL--PNRTRHEIKNKFKKEERINRGLVDHAIKLRKHFD 215          
BLAST of EWM24350.1 vs. NCBI_GenBank
Match: gi|168063954|ref|XP_001783932.1| (predicted protein [Physcomitrella patens] >gi|162664562|gb|EDQ51277.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 84.3445 bits (207), Expect = 1.253e-14
Identity = 44/108 (40.74%), Postives = 67/108 (62.04%), Query Frame = 0
Query:  162 AVGPRVELVDGQIVINQKSLEVVARPEDGGEGAMEEVTEDPQQAATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEKQHGV 269
             + P+V++V+G+IVINQ+SL V A+     +       E+ +     NS+++RT   RW   +T LFY+AL+Q GTDF  + + LF GR  R Q+K+KFK EE+ + V
Sbjct:  145 VLTPQVQIVNGRIVINQQSLMVAAQASTREDIDTYRRVEEDRPKLNSNSYSNRTHVERWKQEDTDLFYKALQQFGTDFELIQN-LFPGRT-RKQVKSKFKNEERLNPV 250          
The following BLAST results are available for this feature:
BLAST of EWM24350.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105745|gb|EWM24350.1|0.000e+0100.00transcription factor tfiiib component [Nannochloro... [more]
gi|390335344|ref|XP_003724124.1|5.597e-1744.86PREDICTED: transcription factor TFIIIB component B... [more]
gi|971518359|dbj|GAQ79823.1|6.455e-1737.60hypothetical protein KFL_000390120 [Klebsormidium ... [more]
gi|1210531522|dbj|GAX09878.1|1.135e-1646.55transcription factor TFIIIB component B'' [Fistuli... [more]
gi|1176124672|ref|XP_020601139.1|1.345e-1640.65uncharacterized protein LOC110040264 [Orbicella fa... [more]
gi|1210526752|dbj|GAX14400.1|4.616e-1645.69transcription factor TFIIIB component B'' [Fistuli... [more]
gi|1005963634|ref|XP_015790027.1|5.718e-1639.66PREDICTED: transcription factor TFIIIB component B... [more]
gi|1005964308|ref|XP_015790299.1|6.920e-1639.66PREDICTED: transcription factor TFIIIB component B... [more]
gi|585711021|ref|XP_006824662.1|8.904e-1536.00PREDICTED: transcription factor TFIIIB component B... [more]
gi|168063954|ref|XP_001783932.1|1.253e-1440.74predicted protein [Physcomitrella patens] >gi|1626... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6338rna6338Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications