EWM24350.1, cds6323 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24350.1 vs. NCBI_GenBank
Match: gi|585105745|gb|EWM24350.1| (transcription factor tfiiib component [Nannochloropsis gaditana]) HSP 1 Score: 585.104 bits (1507), Expect = 0.000e+0 Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 0
Query: 1 MSGGKDEAVGASHAPATAGEEGTVAGRGRTAAVGRTSGISTRQGGREKARDAGPARSGREAEEAGRGKGEGGRGRGGGKGEEGRGRGGGKKGGRGDTHVGADAVSPFPLPAASSSSKAGSGSSGAGATAPPPSGPSTAPSEAVGRQGEGAGGEGPAAAVVVAVGPRVELVDGQIVINQKSLEVVARPEDGGEGAMEEVTEDPQQAATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEKQHGVLVYKYLDSTQPLPVLEAGVHDGRGEGSGEGDD 301
MSGGKDEAVGASHAPATAGEEGTVAGRGRTAAVGRTSGISTRQGGREKARDAGPARSGREAEEAGRGKGEGGRGRGGGKGEEGRGRGGGKKGGRGDTHVGADAVSPFPLPAASSSSKAGSGSSGAGATAPPPSGPSTAPSEAVGRQGEGAGGEGPAAAVVVAVGPRVELVDGQIVINQKSLEVVARPEDGGEGAMEEVTEDPQQAATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEKQHGVLVYKYLDSTQPLPVLEAGVHDGRGEGSGEGDD
Sbjct: 1 MSGGKDEAVGASHAPATAGEEGTVAGRGRTAAVGRTSGISTRQGGREKARDAGPARSGREAEEAGRGKGEGGRGRGGGKGEEGRGRGGGKKGGRGDTHVGADAVSPFPLPAASSSSKAGSGSSGAGATAPPPSGPSTAPSEAVGRQGEGAGGEGPAAAVVVAVGPRVELVDGQIVINQKSLEVVARPEDGGEGAMEEVTEDPQQAATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEKQHGVLVYKYLDSTQPLPVLEAGVHDGRGEGSGEGDD 301
BLAST of EWM24350.1 vs. NCBI_GenBank
Match: gi|390335344|ref|XP_003724124.1| (PREDICTED: transcription factor TFIIIB component B'' homolog isoform X1 [Strongylocentrotus purpuratus] >gi|780156307|ref|XP_011682418.1| PREDICTED: transcription factor TFIIIB component B'' homolog isoform X2 [Strongylocentrotus purpuratus]) HSP 1 Score: 91.6633 bits (226), Expect = 5.597e-17 Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 0
Query: 161 VAVGPRVELVDGQIVINQKSLEVVARPEDGGEGAMEEVTEDPQQAATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEKQH 267
V +GP DG+I+I+QKSL V A P + A EV + TY+SF +R R WT+ +TR FY AL GTDFTT+ ++ + R RA++K KFKKEE+Q+
Sbjct: 370 VKIGP-----DGEIIIDQKSLYVEASPAKTFDLADSEVVHEDSSHTTYSSFVTRKRTATWTEKDTRRFYIALSAVGTDFTTINAMFPS--RTRAEIKRKFKKEERQN 469
BLAST of EWM24350.1 vs. NCBI_GenBank
Match: gi|971518359|dbj|GAQ79823.1| (hypothetical protein KFL_000390120 [Klebsormidium nitens]) HSP 1 Score: 90.8929 bits (224), Expect = 6.455e-17 Identity = 47/125 (37.60%), Postives = 72/125 (57.60%), Query Frame = 0
Query: 160 VVAVGPRVELVDGQIVINQKSLEVVARPEDGGEGAMEEVTEDPQQAATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEKQH-----GVLVYKYLDSTQ 279
V A+ P++ +VDGQIV++Q+SL A+ + E+ N++++R RWTDA+T +FY+ALRQ GTDFTT+ L + R R Q+KNK+ E++ H L +K DS+
Sbjct: 218 VRALAPQIRVVDGQIVVDQQSLTASAQASNPVVSHSYRRVEESGSRLNSNTYSNRKPTKRWTDADTVVFYKALRQFGTDFTTIQKLFPS--RSRHQIKNKYLNEDRHHPKAIEAALNHKSKDSSH 340
BLAST of EWM24350.1 vs. NCBI_GenBank
Match: gi|1210531522|dbj|GAX09878.1| (transcription factor TFIIIB component B'' [Fistulifera solaris]) HSP 1 Score: 90.1225 bits (222), Expect = 1.135e-16 Identity = 54/116 (46.55%), Postives = 75/116 (64.66%), Query Frame = 0
Query: 164 GPRVELVDGQIVINQKSLEVVARPEDGGEGAMEEVTEDPQQA---ATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEKQHGVLVYKYLD 276
GP V++V+G+IV+ + S+ V+ R G E A V E+ Q A AT +SFT+R ++ RWT +TRLFYQALRQ GTDF TM + F +R R QLK K++ E ++ L+ K LD
Sbjct: 209 GPVVQIVNGEIVLQESSV-VINRANRGDEDA-SVVEEEAQLAVVGATAHSFTNRNKSQRWTADQTRLFYQALRQVGTDFGTMEA-FFQEKRTRKQLKRKYQAELIRNPRLIEKALD 321
BLAST of EWM24350.1 vs. NCBI_GenBank
Match: gi|1176124672|ref|XP_020601139.1| (uncharacterized protein LOC110040264 [Orbicella faveolata]) HSP 1 Score: 90.5077 bits (223), Expect = 1.345e-16 Identity = 50/123 (40.65%), Postives = 74/123 (60.16%), Query Frame = 0
Query: 162 AVGPRVELV-DGQIVINQKSLEVVARPEDGGEGAMEEVTEDPQQAATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEKQHGVLVYKYLDSTQPLPV 283
AV PRV+L DG I+++++SL + PE+ + + E+ + A ++ ++ + RWT ET+ FY+AL Q GTDF+ M LF R+ R +LK KFK+EEKQH LV K L P+ V
Sbjct: 451 AVAPRVKLAADGSIILDEESLVIPKSPENTLDDS--EILYEDADAVSFGAYLKHRKVERWTLEETQKFYKALSQVGTDFSLMGP-LFPNRK-RRELKAKFKREEKQHRSLVEKALRLRNPIDV 569
BLAST of EWM24350.1 vs. NCBI_GenBank
Match: gi|1210526752|dbj|GAX14400.1| (transcription factor TFIIIB component B'' [Fistulifera solaris]) HSP 1 Score: 88.1965 bits (217), Expect = 4.616e-16 Identity = 53/116 (45.69%), Postives = 74/116 (63.79%), Query Frame = 0
Query: 164 GPRVELVDGQIVINQKSLEVVARPEDGGEGAMEEVTEDPQQA---ATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEKQHGVLVYKYLD 276
GP V++V+G+IV+ + S+ V+ R E A V E+ Q A AT +SFT+R ++ RWT +TRLFYQALRQ GTDF TM + F +R R QLK K++ E ++ L+ K LD
Sbjct: 192 GPVVQIVNGEIVLQESSV-VINRANRADEDA-SVVEEEAQLAVVGATAHSFTNRNKSQRWTADQTRLFYQALRQVGTDFGTMEA-FFQEKRTRKQLKRKYQAELIRNPRLIEKALD 304
BLAST of EWM24350.1 vs. NCBI_GenBank
Match: gi|1005963634|ref|XP_015790027.1| (PREDICTED: transcription factor TFIIIB component B'' homolog [Tetranychus urticae]) HSP 1 Score: 88.1965 bits (217), Expect = 5.718e-16 Identity = 46/116 (39.66%), Postives = 70/116 (60.34%), Query Frame = 0
Query: 162 AVGPRVEL-VDGQIVINQKSLEVVARPEDGGEGAMEEVTEDPQQ-AATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEKQHGVLVYKYL 275
++GPRV++ DG+++I+++SL V+ +P+ E E+P TY+SF R RWT ET FY AL G DF+ M++L F G+R R LKNKF++E K + ++ K L
Sbjct: 315 SIGPRVKVGPDGELIIDEESL-VIKKPK----PVERETIEEPAYGKTTYSSFRKRPPTVRWTKTETIEFYTALNLIGPDFSLMSNLFFNGKRSRTDLKNKFRRENKLNKTVIDKAL 425
BLAST of EWM24350.1 vs. NCBI_GenBank
Match: gi|1005964308|ref|XP_015790299.1| (PREDICTED: transcription factor TFIIIB component B'' homolog [Tetranychus urticae]) HSP 1 Score: 87.8113 bits (216), Expect = 6.920e-16 Identity = 46/116 (39.66%), Postives = 70/116 (60.34%), Query Frame = 0
Query: 162 AVGPRVEL-VDGQIVINQKSLEVVARPEDGGEGAMEEVTEDPQQ-AATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEKQHGVLVYKYL 275
++GPRV++ DG+++I+++SL V+ +P+ E E+P TY+SF R RWT ET FY AL G DF+ M++L F G+R R LKNKF++E K + ++ K L
Sbjct: 315 SIGPRVKVGPDGELIIDEESL-VIKKPK----PVERETIEEPAYGKTTYSSFRKRPPTVRWTKTETIEFYTALNLIGPDFSLMSNLFFNGKRSRTDLKNKFRRENKLNKTVIDKAL 425
BLAST of EWM24350.1 vs. NCBI_GenBank
Match: gi|585711021|ref|XP_006824662.1| (PREDICTED: transcription factor TFIIIB component B'' homolog, partial [Saccoglossus kowalevskii]) HSP 1 Score: 85.1149 bits (209), Expect = 8.904e-15 Identity = 54/150 (36.00%), Postives = 73/150 (48.67%), Query Frame = 0
Query: 134 GPSTAPSEAVGRQGEGAGGEGPAAAVVVAVGPRVELV-DGQIVINQKSLEVVARPEDGGEGAMEEVTEDPQQAATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEK------QHGVLVYKYLD 276
G P + E EG A V P+V + DG IV+N+ SL V A P + EV + TY SF +T + WTD ET FY+AL GTDFT + ++L R R ++KNKFKKEE+ H + + K+ D
Sbjct: 72 GKDNTPENEENVEKEAVEEEGDNAMPV----PQVRISEDGTIVVNEASLLVEASPPKTHDHCDSEVVYEKASYTTYASFKKKTHTSAWTDRETNKFYKALSTVGTDFTLINAIL--PNRTRHEIKNKFKKEERINRGLVDHAIKLRKHFD 215
BLAST of EWM24350.1 vs. NCBI_GenBank
Match: gi|168063954|ref|XP_001783932.1| (predicted protein [Physcomitrella patens] >gi|162664562|gb|EDQ51277.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 84.3445 bits (207), Expect = 1.253e-14 Identity = 44/108 (40.74%), Postives = 67/108 (62.04%), Query Frame = 0
Query: 162 AVGPRVELVDGQIVINQKSLEVVARPEDGGEGAMEEVTEDPQQAATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGRRDRAQLKNKFKKEEKQHGV 269
+ P+V++V+G+IVINQ+SL V A+ + E+ + NS+++RT RW +T LFY+AL+Q GTDF + + LF GR R Q+K+KFK EE+ + V
Sbjct: 145 VLTPQVQIVNGRIVINQQSLMVAAQASTREDIDTYRRVEEDRPKLNSNSYSNRTHVERWKQEDTDLFYKALQQFGTDFELIQN-LFPGRT-RKQVKSKFKNEERLNPV 250 The following BLAST results are available for this feature:
BLAST of EWM24350.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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