rna6336, rna6336 (mRNA) Nannochloropsis gaditana

Overview
Namerna6336
Unique Namerna6336
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length252
Alignment locationCM002468.1:279749..280094 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100163g2.7191.mrna
Orig protein idgnl|cribi|Naga_100163g2.7191
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:279749..280094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100163g2gene6123Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6336rna6336-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24353.1cds6321Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6336 ID=rna6336|Name=rna6336|organism=Nannochloropsis gaditana|type=mRNA|length=252bp
ATGAGCACCGGGCTTTCCCAATCCCGTGCCCCATTTTCAGCCAGCGTAAG
CATATTGAATGTGCTTCTGACAAAGGATGATCGACTTCCTCGATCGTTGC
GAGCAAGGCCGGGGGGAGGCGGATATCGTGCAACACAAGATGAAATATGC
ACGTGGGAAAGCTCGTTCAGTGCCTCGATTCTGTCCCATGCTCTAAGTGA
AAGACACCTATCCGGGGGAATAAATGGTGTCTACCCGGAAAAAGGCATAT
GA
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protein sequence of rna6336

>rna6336-protein ID=rna6336-protein|Name=rna6336|organism=Nannochloropsis gaditana|type=polypeptide|length=98bp
MIFSLSQLFLAKFYFPHVCRDTSINADQVLIKMVQSWVQNPFMSRYGRYV
QDHKKFCTSVQSQERTLIVEHCTKHGTSFQGGGWQQSNSSYPTITQVN
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mRNA from alignment at CM002468.1:279749..280094+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6336 ID=rna6336|Name=rna6336|organism=Nannochloropsis gaditana|type=mRNA|length=346bp|location=Sequence derived from alignment at CM002468.1:279749..280094+ (Nannochloropsis gaditana)
ATGATATTCTCTCTGTCCCAACTTTTTTTGGCAAAATTTTATTTCCCACA
TGTGTGTAGAGACACCTCAATAAAGTGAGGGGTGAAATCTTTGGTACATT
AAGTATCATAGATGGACGCGCAGTGCGGATCAGGTACTCATTAAAATGGT
TCAGAGCTGGGTACAAAATCCCTTTATGAGTCGCTACGGGAGATACGTGC
AGGACCACAAAAAGTTCTGTACGTCTGTCCAATCACAAGAGCGTACCCTT
ATAGTAGAACACTGCACAAAGCACGGGACTTCTTTCCAGGGGGGTGGATG
GCAGCAATCCAATTCTTCATATCCAACAATAACTCAAGTCAATTAA
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Coding sequence (CDS) from alignment at CM002468.1:279749..280094+

>rna6336 ID=rna6336|Name=rna6336|organism=Nannochloropsis gaditana|type=CDS|length=594bp|location=Sequence derived from alignment at CM002468.1:279749..280094+ (Nannochloropsis gaditana)
ATGATATTCTCTCTGTCCCAACTTTTTTTGGCAAAATTTTATTTCCCACA
TGTGTGTAGAGACACCTCAATAAATGCGGATCAGGTACTCATTAAAATGG
TTCAGAGCTGGGTACAAAATCCCTTTATGAGTCGCTACGGGAGATACGTG
CAGGACCACAAAAAGTTCTGTACGTCTGTCCAATCACAAGAGCGTACCCT
TATAGTAGAACACTGCACAAAGCACGGGACTTCTTTCCAGGGGGGTGGAT
GGCAGCAATCCAATTCTTCATATCCAACAATAACTCAAGTCAATTAAATG
ATATTCTCTCTGTCCCAACTTTTTTTGGCAAAATTTTATTTCCCACATGT
GTGTAGAGACACCTCAATAAATGCGGATCAGGTACTCATTAAAATGGTTC
AGAGCTGGGTACAAAATCCCTTTATGAGTCGCTACGGGAGATACGTGCAG
GACCACAAAAAGTTCTGTACGTCTGTCCAATCACAAGAGCGTACCCTTAT
AGTAGAACACTGCACAAAGCACGGGACTTCTTTCCAGGGGGGTGGATGGC
AGCAATCCAATTCTTCATATCCAACAATAACTCAAGTCAATTAA
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Synonyms
Publications