rna6329, rna6329 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6329
Unique Name	rna6329
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2667
Alignment location	CM002468.1:266977..269927 -

Link to JBrowse

Properties


Property Name	Value
Product	small gtp-binding protein
Orig transcript id	gnl\|cribi\|Naga_100163g8.7200.mrna
Orig protein id	gnl\|cribi\|Naga_100163g8.7200
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:266977..269927 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100163g8	gene6117	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24362.1	cds6314	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6329	rna6329-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:266977..269927-
coding sequence from alignment at CM002468.1:266977..269927-

mRNA sequence

>rna6329 ID=rna6329|Name=rna6329|organism=Nannochloropsis gaditana|type=mRNA|length=2667bp
TCATACTTAATTATTAGCACCTTATTATATTTAATTATTAACAATATCCG
TCTTAATCCTCTTTACACTTGACACAGCATCCACCCAATTCAATTGAAAA
CACCTACCAACAATGTCTGGCATTGAGATCAAGCCTGATGGTGCCATTGG
AGGCGCCTTCGCCCCTAAGCCGGTCGGCGGCAAGGCTCCCACGGTCCCCA
TCACCCTCGCTCCAGAGGGCTGGCCCATCGTGCACGGAACCGTCCAATCC
AAGGACAACTCTGACTACTCCGGTCCCGTGACCGCAGCGGGGCCATTTAC
CTTTGCTACGTCTCAGACCATCAATGAAAAGCCGGACAACACCGGCGTGG
CCCAAATGCTTCTCACGTCCATGCTGGGAGCTTCCAAGAACGGAGGTCTC
CGTTCCATGGCCGACCAGGCCTCGGTACTCCTGGGCTTCAGCCTTGCGGA
CTCTAACCCCGTCTCTGTCATCACAGACAAGCGTCCGGACGGTTCTACCC
TGCTGTGGACCTCGACGATCCGCAACGTGATCGTCTACAAGGTGAGCCCG
GAGGCGCCCGGGACGTTGCAGGAGGTGGCCAAGTACGACCATGGCTACAA
CTTCCGCTTCCATGGCTCTTATGCCTTTGTCGGAGAAGTGAATGGGCAGT
CCCATTTCTTCACGACGGACAATGATTCCTTGGTCTCGTACACGCTGGTG
GAGGAAGGCGGGCGGAAGGGAGGATACTCGATCAAGCCGTTGGGCAAGTT
AGCGCTCCCGGTGTGGACCAATCCCTCCGGCGCGGACCACTTGGTTGGGG
TGACCGTCCTGGACGATGGTACCGTAGTGGTGTGCTCCAAAACGGGCGTC
CTGATGGCGTCCCGTGCTGACGGGAAAGGCGGCTTTGTCCTCATGGATAC
TCTGGCTCTCGGCGACTTTACCCGTACCAGCAACAACGAGGTGTCCAACT
CGATTTCGGCCGATGGGCAAGGCATTTTCATTGTCACGCAGCGTGAAGTC
TGCCGTGTCGATTTCAACCCTGCCACGGGACGTCTGGGCTTCAAGTGGAG
CACCATTTACGGCCCGGAGGCCCCTTGGTACATCGGACGGCTGGGACCGG
GGGCTGGCAGCACCCCCTCGATTAGCGAGTGCGGAGGCAGGAAGACGATC
GTGATTACGGACGGCGCCATGCCCATGAATGTGCTCTGGTACGACGCGGA
GAAAGGTGTGTTGGCCGGGAGCCGAAAGGTGCAGTTTACCGAGGACGAGA
ACGGGAATCTGCCCACGCAAAGCGAGCAGAGCGTGGCTGTCGACGGGTGC
AAGGCCTTCGTGGTCCAAAACTACATGGGCATGACGGAATTAGACGACAG
TGTCTTTTGCACAACGGCTCCCCAAGGCGGCTTTGTCCGCGAGCAGATCC
CCCAGATTTGCGACCAGCTTCTCCCGTACAACAGCACTGACCTGTTCCTT
TCTCGTGCCTGTCCCCCGGCCCTGGGGTGCTACTCCCCGGGCATGGCGGT
GTACGAGATGGACCCTCATGCCATGGAGAGCAACGGCCAGAACAAGGTCA
GCCGGGCATGGACGCGCATGGACAAGTCGTGCGGGACCAGCATCCCCCTT
ATCTCCAAGGGAAGCAACGCGGCCTACTGCGTCGGCGCGGAGGCGGGGTC
CAGTCAGTGGACGCTGCTGGGGATGGACATGGACACGGGGAAGGACGTCT
TTAGCCACCAGTTCTACGAGGAATTTGGGGCGCGCAACATCTTCATTAAC
CCCTTCTATGCTGGCGTGGAGGCCATTGGGGACAATGAGATCGTGATTGG
GTCGGTGGGGGGCATCGTGTACGTGTCCCCCATGCCCGCGGGCGGGATGA
CGACCACCACCAAGACTTTTGGCTTCAAACGTCGATCCAACCGTCTAGAA
CACCCACACCGTAATTCCCCGTCGGTTCAACCCCTCGACCAATCTTTACA
CAGGTTCCGCTCTTTGTCGGCTGATTTCCAGAAGGACATGAGCCGTGGCG
TTACGTCCATGCTGCATGGTAATTTGCACGACGTCACAATGCCCGTCGGA
GCCACCCTCATCGCGGCTGGTCTTGCGGTGCTGGCGCTTTTGTTCGTGAT
CCTCCGTCGGGGCCATGCGCTTGTGTCTCCTCGCCTGCCCACCCGGACGT
AAGGAGGGAGAGCGCTGGAAAAATAATGATTTGAGACGAGGGAGATTATC
AGCAGTCAATATTGAGGACATGAAAGAGCCATCGTATCGCGCGTTGGGAA
GAGATGTCAAAAGCAACGTATCCTAGCTTTTCCATGAAATATATGAGAGT
GAGGGGCGTAAAAGGGTAGCCTTGTAGGCTACGAGCGCCCCTCATAAAGA
TTCACAATTTGCATCCACGGCAAGTTTATGGAAAGTGATATAGAAACAGA
GAGGTAAAGGAAGCAGCGATTGCTTCTGGGTGTTGAGAGGGGAATCGGTC
AAATCAGTTCAAATGTGCGCGGTAAAAAGTTTTTTCCTTGCCCGTCCAGT
CTTTTTACGGATTGGGAAGCATACGAGGCAGCAATTTTTTTGCACACGTT
GGACAGCAGAACAAGGAAAATAAAATCACACCTCGGGTCGGCATATTGTT
ACACTTCCGCTCTTCGCTCTTGTGTTGATCGACCCGACTGTCCTCGGACT
TTTCACAGGATACGCGG

protein sequence of rna6329

>rna6329-protein ID=rna6329-protein|Name=rna6329|organism=Nannochloropsis gaditana|type=polypeptide|length=310bp
MDAETPLTRLLRPQALLQAFCLHHYIPTIAYRMNLSKARSFPPSSPSPSV
SSMQSPYEEEKAKFLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGGDES
FTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGK
EARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREF
PWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYA
AAPQAMLRAVRPFGVEIPEILSKHATMVEQDGDVGRRASKSGSSCLNPVS
ALSPLTDMKE

mRNA from alignment at CM002468.1:266977..269927-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6329 ID=rna6329|Name=rna6329|organism=Nannochloropsis gaditana|type=mRNA|length=2951bp|location=Sequence derived from alignment at CM002468.1:266977..269927- (Nannochloropsis gaditana)
GCGGCTCTGGAATTGATTTTGAGATGGCATTTTTGGGGGTGGGTGCGATG
TCGGAAAAAGCAGAGCTTCCGCTGCTTGCGGTGGGACGGGGGCGTAAGAA
TGACAGTCTGGGCCGCGCCAAGTTGACAGGAGCGAATGCAGACGATGTGC
CGGTTCCACGGTGCGCAATAACCCGCTTCGGGAGACGCAGGCCGCGCATA
GCCCCCTAAATTTTCATTTGTGTCCGTAGGATGTGTTGGTGACGGAATAT
TTGTCAGAATATGGCCTTGAAAAAAGAAGAAAGTAGAACATTCAGGCGAG
GGTCCTGGAAACGAGCGACATGCACGACATCCTTTTGAACCTGCTAGCAT
CGTTTAAATTTCCTTTCCCACGACCCGTGCCACCCCCGTCGGCAATACAG
GCAATGCCCGCACGGACACGGGCCATGCCAACGCAGCGCAAAGGCTTTGA
AAGACATTCGTTAATACAGGCATCGCGGTCAGAACAAGCCCTTTGGCGCT
GAGTTGAAGCTCAGAACGTCACGAAAGAAAGGAAGAATGCCGCCCAGTGC
AGCGTTCAGGTGCGTTTCGTGTTACAACTAGCATGCATTCATAAAGTGTA
CCTTGTGGCAGTCAGGTAGGCAGGCATATATTTTGATTTTCGAGAAGGGT
GGCTTGAACGTTTAGAGCTCTCGGACACTCAACATTACAAGTAACCCCTC
TCACCCATGTGCTGCCCTCCTTCCCCCCTCTCCATCCCGTCATCCTTTTT
CAGACGTTTACGTACTCCATGTCTCTCGCTCCTTGCTTCTTCTTTTTCGT
CGGCTACCGCCAAGGCGCCTCCCTCGACGGGGCTGCACCGCCTCCTCATT
GGCTTGGTGGGGGAAATGAACGCGGGCAAGAGCACGTGTTTGAATGCACT
CACCCAGCAGGCCACCTCCATTGTCGATGCCACTCCTGGCACCACTGCCG
ACGTCAAAGCTGCACTCTTGGAACTGCACGGCCTGGGCCCCGTGAAGCTC
CTCGACACGGCGGGTATCGATGACGTGGGGGCGTTGGGAGAGAAGAAAAA
AGAGCGGACCTACCGGGCCTTGAAGGAAATTGACGTGGCCTTGGTGGTGA
TTGATCCGTTTTCCAAGATCCTGTCGAGTTCCTCGTCCCAAAGGCCTTAT
GATGGAACGGGAAGGGAAGGACGGCGCCGTGATGAGGGAGGAGGTGGGAT
AGGAGGGGATATGTCCGAAAGCGCAATGGCAACGCCACCGTACACAGCCT
GTCAGGCGGATCCTTCCTCGCTTTCCCTCCTCTCCTCCCTCGTGCAGGCC
ATGGACCGCCGGGGACGCCGCGCCATGCTCGTCTTCAACTTGAAGAAGGA
GAGAGAGGAGGAGGTGGCTCGGGAGGGAAGGACGAGTCTTGGGGGGGGGG
GGAGGAACGGGCGGGTGAGGCAGGCGCTAGCTCTCCGTGGGTGAGGGAAC
TGATTAATTCCATCGAAGAATGTATTCGGAGGGATATCAAGGGACAAAAA
TCGTACTCGTTAAGAGGAGAAGAGGGAGGAGGGGGGGGACAAGGCGGGGG
ACAAGGTAGGAGGGGGAGGCCGATCGGCCCGTCCACGGCCAGTGCAAGCG
CCCCGGTCAGAAGGAACCTCCCTTTCTTCACGACAGATGGCGAGCAGGAG
GGCTCCCATTTCGTCCTCCTCCCTTCCTTCACGGCGGACTTCACAGCCCC
CGGCGCGGGAAAGGCCCTGGCCTTACACCTACTTCACTCCCTCCGCCCGT
CCTCCCGCCCTGCCTCCGCCCCCTCCTTGCCCACCGAGGACCCCGAACCT
CCCCTCCTCCCCCTCCAATATCATCACGACAAAATCGTCCTCCTCAACAT
ACCCATGGACGCCGAGACCCCCCTCACCCGCCTCCTGCGGCCTCAGGCCC
TCCTCCAAGCCTTCTGCCTCCACCACTACATCCCAACGATCGCCTACCGG
ATGAACCTGAGCAAAGCCCGGTCCTTCCCTCCTTCCTCGCCCTCCCCCTC
CGTCTCCTCCATGCAATCACCCTACGAGGAGGAGAAAGCCAAGTTCCTCT
CCCTCCTCTCCCTCCTCCCTCCCGGTAGCCTGGTTGTCACCGACTCTCAA
GCCATCGACGTCGTCCACGCCTGGACCTTGCCGCCACTTGGCGGGGACGA
ATCATTTACTAAGCTTCAAAAGCCGGTGGACATTACCACCTTTAGCATCG
TCATGATTCAGCACATGAGCGGGGGAAGGTTGGGGGCCTTTGTGGAGGGT
ATGACCCGGCTGGTGGAGATGGAGGAGGAGGCAAGGCAGGCCAAAGAAGG
GAAAGAAGCGAGGGTGTTGATAGCGGAGGCATGCAATCATGTCCGGATCC
CAGAGGCGTGTGACGATATTGGCACGGTGCAGCTACCTCAGGCCCTTCGG
AGGGCGTTTCCACACCTTGGTTTCCATATTCATCACGCCTACGGCCGAGA
ATTTCCCTGGCAGGCTTTGCAAGACGGAAGGTACGACGTAGTGGTCCATT
GCGGCGGCTGCATGATCGACAGGCAAAAGGTGCGGGCCCGCATGGAAGAA
TGTGCCGACGGGGGGGTTGCCACGACAAACTATGGCCTTCTGTTGGCCTA
CGCGGCTGCACCGCAGGCCATGTTGAGGGCGGTACGTCCTTTTGGTGTGG
AAATACCAGAGATATTGAGCAAGCATGCAACAATGGTGGAACAGGATGGA
GATGTAGGGCGGAGGGCATCGAAATCCGGGTCGTCTTGCCTGAACCCCGT
GAGTGCCTTGTCTCCTCTGACTGACATGAAAGAATGAGTGTAAAAAAGTC
GCGATTTTACAGTGTGTTGCGCGCCATTGACGAATATACTTAAGAAGTGA
AGCTGCCTCAAATCTGATTTACAGCCAAAGCAGGCGAATTAAATGCACAA
GCTTGTTTCGGTTTTCTTTTCCTTCCAAGTCGTATTCCTTAAATCAAGTC
G

Coding sequence (CDS) from alignment at CM002468.1:266977..269927-

>rna6329 ID=rna6329|Name=rna6329|organism=Nannochloropsis gaditana|type=CDS|length=933bp|location=Sequence derived from alignment at CM002468.1:266977..269927- (Nannochloropsis gaditana)
ATGGACGCCGAGACCCCCCTCACCCGCCTCCTGCGGCCTCAGGCCCTCCT
CCAAGCCTTCTGCCTCCACCACTACATCCCAACGATCGCCTACCGGATGA
ACCTGAGCAAAGCCCGGTCCTTCCCTCCTTCCTCGCCCTCCCCCTCCGTC
TCCTCCATGCAATCACCCTACGAGGAGGAGAAAGCCAAGTTCCTCTCCCT
CCTCTCCCTCCTCCCTCCCGGTAGCCTGGTTGTCACCGACTCTCAAGCCA
TCGACGTCGTCCACGCCTGGACCTTGCCGCCACTTGGCGGGGACGAATCA
TTTACTAAGCTTCAAAAGCCGGTGGACATTACCACCTTTAGCATCGTCAT
GATTCAGCACATGAGCGGGGGAAGGTTGGGGGCCTTTGTGGAGGGTATGA
CCCGGCTGGTGGAGATGGAGGAGGAGGCAAGGCAGGCCAAAGAAGGGAAA
GAAGCGAGGGTGTTGATAGCGGAGGCATGCAATCATGTCCGGATCCCAGA
GGCGTGTGACGATATTGGCACGGTGCAGCTACCTCAGGCCCTTCGGAGGG
CGTTTCCACACCTTGGTTTCCATATTCATCACGCCTACGGCCGAGAATTT
CCCTGGCAGGCTTTGCAAGACGGAAGGTACGACGTAGTGGTCCATTGCGG
CGGCTGCATGATCGACAGGCAAAAGGTGCGGGCCCGCATGGAAGAATGTG
CCGACGGGGGGGTTGCCACGACAAACTATGGCCTTCTGTTGGCCTACGCG
GCTGCACCGCAGGCCATGTTGAGGGCGGTACGTCCTTTTGGTGTGGAAAT
ACCAGAGATATTGAGCAAGCATGCAACAATGGTGGAACAGGATGGAGATG
TAGGGCGGAGGGCATCGAAATCCGGGTCGTCTTGCCTGAACCCCGTGAGT
GCCTTGTCTCCTCTGACTGACATGAAAGAATGA

Synonyms

Publications