EWM24362.1, cds6314 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM24362.1 vs. NCBI_GenBank
Match: gi|585105758|gb|EWM24362.1| (small gtp-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 642.499 bits (1656), Expect = 0.000e+0 Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0 Query: 1 MDAETPLTRLLRPQALLQAFCLHHYIPTIAYRMNLSKARSFPPSSPSPSVSSMQSPYEEEKAKFLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGGDESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPFGVEIPEILSKHATMVEQDGDVGRRASKSGSSCLNPVSALSPLTDMKE 310 MDAETPLTRLLRPQALLQAFCLHHYIPTIAYRMNLSKARSFPPSSPSPSVSSMQSPYEEEKAKFLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGGDESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPFGVEIPEILSKHATMVEQDGDVGRRASKSGSSCLNPVSALSPLTDMKE Sbjct: 1 MDAETPLTRLLRPQALLQAFCLHHYIPTIAYRMNLSKARSFPPSSPSPSVSSMQSPYEEEKAKFLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGGDESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPFGVEIPEILSKHATMVEQDGDVGRRASKSGSSCLNPVSALSPLTDMKE 310
BLAST of EWM24362.1 vs. NCBI_GenBank
Match: gi|553193001|ref|XP_005855690.1| (small gtp-binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293370|gb|EKU20670.1| small gtp-binding protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 520.39 bits (1339), Expect = 0.000e+0 Identity = 251/253 (99.21%), Postives = 251/253 (99.21%), Query Frame = 0 Query: 58 EEEKAKFLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGGDESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPFGVEIPEILSKHATMVEQDGDVGRRASKSGSSCLNPVSALSPLTDMKE 310 EEEKAKFLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGGDESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPFGVEIPEILSKHATMVEQDGDVGRRASKSGSSCLNPV ALSPL DMKE Sbjct: 1 EEEKAKFLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGGDESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPFGVEIPEILSKHATMVEQDGDVGRRASKSGSSCLNPVCALSPLIDMKE 253
BLAST of EWM24362.1 vs. NCBI_GenBank
Match: gi|1039092112|gb|ANM86879.1| (HydF [Stygiella incarcerata] >gi|1039092159|gb|ANM86740.1| HydF [Stygiella incarcerata]) HSP 1 Score: 230.335 bits (586), Expect = 2.536e-68 Identity = 118/268 (44.03%), Postives = 168/268 (62.69%), Query Frame = 0 Query: 1 MDAETPLTRLLRPQALLQAFCLHHYIPTIAYRMNLSKARSFPPSSPSPSVSSMQSPYEEEKAKFLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGGDESFTKLQ-KPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPFGVEI 267 MDAETP RLLRPQA+ Q FCL ++ T+AYRM+L R+ E E+ +F+ ++ + P SL+VTDSQA+D+ WT T + + V++TTFSI+MI HM+GG L FV+G+ L ++ K+ ++LIAEACNH RI + C+DIGTVQ+P L++ F + HA+GREFP L + Y +V+HCGGCMID QK+ ARM++C + G+ TNYGLLL+Y +PQA+ + +RP+G+ I Sbjct: 264 MDAETPSGRLLRPQAMTQEFCLRNFTTTLAYRMDLQAGRN----------KDDDGVREAERVRFVDAVTKVKP-SLIVTDSQAMDLCAPWT----------TDVNMRDVELTTFSIMMINHMAGGNLKVFVDGLKALKSID---------KKKKILIAEACNHNRITDICEDIGTVQIPNKLKKLFGE-DVKLEHAFGREFPELKLDE--YQLVIHCGGCMIDSQKMMARMQDCLEAGIPITNYGLLLSYFQSPQALAKVLRPWGLSI 498
BLAST of EWM24362.1 vs. NCBI_GenBank
Match: gi|469474145|gb|AGH33866.1| (hydrogenase maturase HydF [Paratrimastix pyriformis]) HSP 1 Score: 229.565 bits (584), Expect = 1.474e-67 Identity = 130/273 (47.62%), Postives = 167/273 (61.17%), Query Frame = 0 Query: 1 MDAETPLTRLLRPQALLQAFCLHHYIPTIAYRMNLSKARSFPPSSPSPSVSSMQSPYEEEKAKFLSLLSLL----PPG-SLVVTDSQAIDVVHAWTLPPLGGDESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPFGVEIP 268 +D E+P TRLLRPQAL+ L+ Y AYRM+L+KARS P P+V + EKA+FL + L P G L+VTDSQAIDVVH WTL P G + V +TTFSI +I H + GRL F+EG+ L E R RVL+AEACNH RI C+DIGTVQLP+ + + I H +GREFP + L +Y +VVHCG CMIDRQK+ AR+++ GV TNYG+LL+Y A+P+A+ RAV PFG+ +P Sbjct: 304 LDEESPTTRLLRPQALVLTHLLNSYANAFAYRMDLTKARS-----PDPAVRAT------EKARFLDKIHALQRCRPNGLGLLVTDSQAIDVVHPWTLGPTG--------EPLVPVTTFSIALINHQTEGRLAQFIEGLRAL----ETLRPGD-----RVLVAEACNHNRIAAVCNDIGTVQLPKKFAQRYGPGAIQIDHEFGREFPIERL--AQYRLVVHCGACMIDRQKMIARLDDLKRAGVPVTNYGVLLSYLASPKALARAVEPFGIRVP 546
BLAST of EWM24362.1 vs. NCBI_GenBank
Match: gi|1183353349|gb|ORX81238.1| (P-loop containing nucleoside triphosphate hydrolase protein [Anaeromyces robustus]) HSP 1 Score: 226.483 bits (576), Expect = 5.523e-67 Identity = 117/263 (44.49%), Postives = 165/263 (62.74%), Query Frame = 0 Query: 1 MDAETPLTRLLRPQALLQAFCLHHYIPTIAYRMNLSKARSFPPSSPSPSVSSMQSPYEEEKAKFLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGGDESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPF 263 MDAETP RLLRPQ+ Q FCL HY T AYRM+L K RS VS + EK +F +S + P S+V+TDSQA+D+V W P + F +Q +TTFSI+MI M+ G+L F++G+ +L ++ ++ +LI+EACNH R+ + C+DIGT Q+P LR++F + I HA+GREFP + L++ Y +VVHCGGCMID+QK+ AR+++C + V TNYGLLL Y +P+A+ R +PF Sbjct: 262 MDAETPGGRLLRPQSKCQEFCLSHYTSTFAYRMDLVKGRS-----KDTKVS------DAEKKRFQDAISKVKP-SIVITDSQAMDLVGKWVTP-----DKFPDVQ----LTTFSIMMINQMTDGQLPRFIQGLEKLKSLKPNSK---------ILISEACNHNRLTDICEDIGTKQIPDKLRKSFGN-SIVIDHAFGREFPNEKLKE--YSLVVHCGGCMIDKQKICARLDDCIENNVPITNYGLLLTYLNSPKALKRVTKPF 491
BLAST of EWM24362.1 vs. NCBI_GenBank
Match: gi|470487644|ref|XP_004344717.1| (iron hydrogenase assembly protein [Acanthamoeba castellanii str. Neff] >gi|440799931|gb|ELR20974.1| iron hydrogenase assembly protein [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 217.624 bits (553), Expect = 6.336e-64 Identity = 124/272 (45.59%), Postives = 158/272 (58.09%), Query Frame = 0 Query: 1 MDAETPLTRLLRPQALLQAFCLHHYIPTIAYRMNLSKARS----FPPSSPSPSVSSMQSPYEEEKAKFLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGG---DESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPFGV 265 MDAETP RLLRPQAL+Q L Y T YRM+L KARS SS+ + + K K L +TDSQA DVVH WT+ P D+ Q+ V +TTFS++MI +MSGGRL AFVEG+ R + K G +VLI EACNH RI DDIGTVQ+P LR+ F + HA+GRE+ + L D Y +V+HCGGCM+D+QK+ AR+ + GV TNYGLLL+Y AA Q + R +RP+G+ Sbjct: 216 MDAETPSGRLLRPQALVQEELLRQYASTFCYRMDLKKARSPIEEERREEEQRFRSSVDALKSQNKLKLL------------ITDSQATDVVHKWTMEPGTAAPSDQGGQSSQETVPLTTFSVMMINYMSGGRLSAFVEGIKRFETL-------KHGD--KVLICEACNHDRIQ---DDIGTVQIPAKLRQRFGEGTIGVDHAFGREYQTKILND--YQLVIHCGGCMLDQQKMAARLSDIEGSGVPITNYGLLLSYLAAKQGLSRVLRPWGL 461
BLAST of EWM24362.1 vs. NCBI_GenBank
Match: gi|873225321|emb|CEM24053.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 226.483 bits (576), Expect = 1.008e-63 Identity = 125/274 (45.62%), Postives = 175/274 (63.87%), Query Frame = 0 Query: 1 MDAETPLTRLLRPQALLQAFCLHHYIPTIAYRMNLSKARSFPPSSPSPSVSSMQSPYEEEKAKFLSLLSLLPPGS----LVVTDSQAIDVVHAWTLPPLGGDESFTKLQKP-VDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQD----GRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPFGV 265 MDAETP RLLRPQA++Q + HY T+AYRM+L+KARS P+ +EEK++FL +L+++ + L++TDSQA+D+VH WTL P+ +P +DITTFSI ++ SGG+L FVEG+ R + K+G RVL+AE CNH RI + C+DI TVQLP +R A + HA+GREFP Q G Y +V+HCGGC ID+QKV+AR+++ + GV TN+GLLL+Y AAP+A+ RA++P+G+ Sbjct: 741 MDAETPAGRLLRPQAMVQESIIRHYGTTVAYRMDLAKARSSDPAE-----------VQEEKSRFLKMLNMVLQQTAGPKLLITDSQAMDIVHPWTLDPV--------TNRPLIDITTFSIALLHRQSGGQLPTFVEGLERF-------KHIKQGD--RVLVAEGCNHNRITQLCNDIATVQLPGHIR-AQGGASIAVDHAFGREFPDIEDQSDKGLGAYSLVIHCGGCYIDKQKVQARVDDLREMGVPVTNFGLLLSYVAAPEAVDRALQPWGL 985
BLAST of EWM24362.1 vs. NCBI_GenBank
Match: gi|1183319880|gb|ORX49704.1| (P-loop containing nucleoside triphosphate hydrolase protein [Piromyces finnis]) HSP 1 Score: 216.468 bits (550), Expect = 3.763e-63 Identity = 113/263 (42.97%), Postives = 161/263 (61.22%), Query Frame = 0 Query: 1 MDAETPLTRLLRPQALLQAFCLHHYIPTIAYRMNLSKARSFPPSSPSPSVSSMQSPYEEEKAKFLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGGDESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPF 263 MDAETP RLLRPQ+ Q FCL H+ T AYRM+L K RS +VS E EK +F + + P S+++TDSQA+D+V W P + F +Q +TTFSI+MI M+ G+L F++G+ L ++ + +LI+EACNH R+ + C+DIGT Q+P L+R + I HA+GREFP + L++ Y +VVHCGGCMID+QK+ AR+++C + + TNYGLLL Y +P+A+ R +PF Sbjct: 256 MDAETPGGRLLRPQSKCQEFCLSHFTSTYAYRMDLIKGRS-----NDSNVS------ETEKKRFQDAIERIKP-SIIITDSQAMDLVGRWVSP-----DKFPNVQ----LTTFSIMMINQMTDGQLPKFIKGLEVLKSLKSNDK---------ILISEACNHNRLTDICEDIGTKQIPDKLKRKLGN-SIVIDHAFGREFPSKELKE--YSLVVHCGGCMIDKQKMCARLDDCIENNIPITNYGLLLTYLNSPKALKRVTKPF 485
BLAST of EWM24362.1 vs. NCBI_GenBank
Match: gi|1183412690|gb|ORY37143.1| (P-loop containing nucleoside triphosphate hydrolase protein [Neocallimastix californiae]) HSP 1 Score: 215.698 bits (548), Expect = 5.350e-63 Identity = 111/263 (42.21%), Postives = 157/263 (59.70%), Query Frame = 0 Query: 1 MDAETPLTRLLRPQALLQAFCLHHYIPTIAYRMNLSKARSFPPSSPSPSVSSMQSPYEEEKAKFLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGGDESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPF 263 MDAETP RLLRPQ+ Q FCL H+ T AYRM+L+K RS +++K K S+V+TDSQA+D+V W P + F +Q +TTFSI+MI M+ G+L F++G+ L M+ ++ +LI+EACNH R+ + C+DIGT Q+P LR++ I HA+GREFP+ L++ Y +VVHCGGCMID+QK+ AR+E+C + + TNYGLLL Y +P+A+ R +PF Sbjct: 261 MDAETPGGRLLRPQSKCQEFCLSHFTSTFAYRMDLAKGRS-----------------KDKKVK----------PSIVITDSQAMDLVGRWVSP-----QKFPNVQ----LTTFSIMMINQMTDGQLPQFIKGLNTLKTMKPNSK---------ILISEACNHDRLTDICEDIGTKQIPDKLRKSLGD-SIVIDHAFGREFPYDKLKE--YSLVVHCGGCMIDKQKICARLEDCIENNIPITNYGLLLTYLNSPKALKRVTKPF 475
BLAST of EWM24362.1 vs. NCBI_GenBank
Match: gi|931448782|gb|KPK32771.1| (hypothetical protein AMS24_03225 [Chlamydiae bacterium SM23_39]) HSP 1 Score: 204.527 bits (519), Expect = 3.871e-59 Identity = 111/267 (41.57%), Postives = 158/267 (59.18%), Query Frame = 0 Query: 1 MDAETPLTRLLRPQALLQAFCLHHYIPTIAYRMNLSKARSFPPSSPSPSVSSMQSPYEEEKAKFLSLLSLLPPGSL--VVTDSQAIDVVHAWTLPPLGGDESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPFGV 265 MD ETP RLLRPQA +Q L YI T AYRM+L KAR+ P+ E+EK +F + LL +L ++TDSQAID++H WT + ++ITTFSI+M +S G+L FVEG+ L + K+G ++LIAEACNH RI E DIGTVQLP+ L + I HA+GRE + LQ +Y +++HCGGCM+D+QK+++R+ + + TNYG++L+Y +PQ + R ++PFG+ Sbjct: 198 MDEETPRNRLLRPQAYVQENFLRRYIATFAYRMDLIKARN--PNKKQQ---------EQEKKRFQKTIKLLQEQNLKLLITDSQAIDIIHPWT--------------RGLEITTFSIIMADIVSRGKLNLFVEGLKVL-------KSLKKGD--KILIAEACNHNRIKE---DIGTVQLPKKLNFIYGKDNIIIEHAFGREVDFLDLQ--KYKLIIHCGGCMLDQQKMQSRIIDLMQAKIPITNYGIILSYFQSPQTLRRVLKPFGL 425 The following BLAST results are available for this feature:
BLAST of EWM24362.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|