EWM24362.1, cds6314 (CDS) Nannochloropsis gaditana

Overview
NameEWM24362.1
Unique Namecds6314
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:267141..268073 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24362.1
Productsmall gtp-binding protein
Orig transcript idgnl|cribi|Naga_100163g8.7200.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:267141..268073 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24362.1 vs. NCBI_GenBank
Match: gi|585105758|gb|EWM24362.1| (small gtp-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 642.499 bits (1656), Expect = 0.000e+0
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0
Query:    1 MDAETPLTRLLRPQALLQAFCLHHYIPTIAYRMNLSKARSFPPSSPSPSVSSMQSPYEEEKAKFLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGGDESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPFGVEIPEILSKHATMVEQDGDVGRRASKSGSSCLNPVSALSPLTDMKE 310
            MDAETPLTRLLRPQALLQAFCLHHYIPTIAYRMNLSKARSFPPSSPSPSVSSMQSPYEEEKAKFLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGGDESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPFGVEIPEILSKHATMVEQDGDVGRRASKSGSSCLNPVSALSPLTDMKE
Sbjct:    1 MDAETPLTRLLRPQALLQAFCLHHYIPTIAYRMNLSKARSFPPSSPSPSVSSMQSPYEEEKAKFLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGGDESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPFGVEIPEILSKHATMVEQDGDVGRRASKSGSSCLNPVSALSPLTDMKE 310          
BLAST of EWM24362.1 vs. NCBI_GenBank
Match: gi|553193001|ref|XP_005855690.1| (small gtp-binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293370|gb|EKU20670.1| small gtp-binding protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 520.39 bits (1339), Expect = 0.000e+0
Identity = 251/253 (99.21%), Postives = 251/253 (99.21%), Query Frame = 0
Query:   58 EEEKAKFLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGGDESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPFGVEIPEILSKHATMVEQDGDVGRRASKSGSSCLNPVSALSPLTDMKE 310
            EEEKAKFLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGGDESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPFGVEIPEILSKHATMVEQDGDVGRRASKSGSSCLNPV ALSPL DMKE
Sbjct:    1 EEEKAKFLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGGDESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPFGVEIPEILSKHATMVEQDGDVGRRASKSGSSCLNPVCALSPLIDMKE 253          
BLAST of EWM24362.1 vs. NCBI_GenBank
Match: gi|1039092112|gb|ANM86879.1| (HydF [Stygiella incarcerata] >gi|1039092159|gb|ANM86740.1| HydF [Stygiella incarcerata])

HSP 1 Score: 230.335 bits (586), Expect = 2.536e-68
Identity = 118/268 (44.03%), Postives = 168/268 (62.69%), Query Frame = 0
Query:    1 MDAETPLTRLLRPQALLQAFCLHHYIPTIAYRMNLSKARSFPPSSPSPSVSSMQSPYEEEKAKFLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGGDESFTKLQ-KPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPFGVEI 267
            MDAETP  RLLRPQA+ Q FCL ++  T+AYRM+L   R+                 E E+ +F+  ++ + P SL+VTDSQA+D+   WT          T +  + V++TTFSI+MI HM+GG L  FV+G+  L  ++         K+ ++LIAEACNH RI + C+DIGTVQ+P  L++ F      + HA+GREFP   L +  Y +V+HCGGCMID QK+ ARM++C + G+  TNYGLLL+Y  +PQA+ + +RP+G+ I
Sbjct:  264 MDAETPSGRLLRPQAMTQEFCLRNFTTTLAYRMDLQAGRN----------KDDDGVREAERVRFVDAVTKVKP-SLIVTDSQAMDLCAPWT----------TDVNMRDVELTTFSIMMINHMAGGNLKVFVDGLKALKSID---------KKKKILIAEACNHNRITDICEDIGTVQIPNKLKKLFGE-DVKLEHAFGREFPELKLDE--YQLVIHCGGCMIDSQKMMARMQDCLEAGIPITNYGLLLSYFQSPQALAKVLRPWGLSI 498          
BLAST of EWM24362.1 vs. NCBI_GenBank
Match: gi|469474145|gb|AGH33866.1| (hydrogenase maturase HydF [Paratrimastix pyriformis])

HSP 1 Score: 229.565 bits (584), Expect = 1.474e-67
Identity = 130/273 (47.62%), Postives = 167/273 (61.17%), Query Frame = 0
Query:    1 MDAETPLTRLLRPQALLQAFCLHHYIPTIAYRMNLSKARSFPPSSPSPSVSSMQSPYEEEKAKFLSLLSLL----PPG-SLVVTDSQAIDVVHAWTLPPLGGDESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPFGVEIP 268
            +D E+P TRLLRPQAL+    L+ Y    AYRM+L+KARS     P P+V +       EKA+FL  +  L    P G  L+VTDSQAIDVVH WTL P G        +  V +TTFSI +I H + GRL  F+EG+  L    E  R        RVL+AEACNH RI   C+DIGTVQLP+   + +      I H +GREFP + L   +Y +VVHCG CMIDRQK+ AR+++    GV  TNYG+LL+Y A+P+A+ RAV PFG+ +P
Sbjct:  304 LDEESPTTRLLRPQALVLTHLLNSYANAFAYRMDLTKARS-----PDPAVRAT------EKARFLDKIHALQRCRPNGLGLLVTDSQAIDVVHPWTLGPTG--------EPLVPVTTFSIALINHQTEGRLAQFIEGLRAL----ETLRPGD-----RVLVAEACNHNRIAAVCNDIGTVQLPKKFAQRYGPGAIQIDHEFGREFPIERL--AQYRLVVHCGACMIDRQKMIARLDDLKRAGVPVTNYGVLLSYLASPKALARAVEPFGIRVP 546          
BLAST of EWM24362.1 vs. NCBI_GenBank
Match: gi|1183353349|gb|ORX81238.1| (P-loop containing nucleoside triphosphate hydrolase protein [Anaeromyces robustus])

HSP 1 Score: 226.483 bits (576), Expect = 5.523e-67
Identity = 117/263 (44.49%), Postives = 165/263 (62.74%), Query Frame = 0
Query:    1 MDAETPLTRLLRPQALLQAFCLHHYIPTIAYRMNLSKARSFPPSSPSPSVSSMQSPYEEEKAKFLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGGDESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPF 263
            MDAETP  RLLRPQ+  Q FCL HY  T AYRM+L K RS         VS      + EK +F   +S + P S+V+TDSQA+D+V  W  P     + F  +Q    +TTFSI+MI  M+ G+L  F++G+ +L  ++  ++         +LI+EACNH R+ + C+DIGT Q+P  LR++F +    I HA+GREFP + L++  Y +VVHCGGCMID+QK+ AR+++C +  V  TNYGLLL Y  +P+A+ R  +PF
Sbjct:  262 MDAETPGGRLLRPQSKCQEFCLSHYTSTFAYRMDLVKGRS-----KDTKVS------DAEKKRFQDAISKVKP-SIVITDSQAMDLVGKWVTP-----DKFPDVQ----LTTFSIMMINQMTDGQLPRFIQGLEKLKSLKPNSK---------ILISEACNHNRLTDICEDIGTKQIPDKLRKSFGN-SIVIDHAFGREFPNEKLKE--YSLVVHCGGCMIDKQKICARLDDCIENNVPITNYGLLLTYLNSPKALKRVTKPF 491          
BLAST of EWM24362.1 vs. NCBI_GenBank
Match: gi|470487644|ref|XP_004344717.1| (iron hydrogenase assembly protein [Acanthamoeba castellanii str. Neff] >gi|440799931|gb|ELR20974.1| iron hydrogenase assembly protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 217.624 bits (553), Expect = 6.336e-64
Identity = 124/272 (45.59%), Postives = 158/272 (58.09%), Query Frame = 0
Query:    1 MDAETPLTRLLRPQALLQAFCLHHYIPTIAYRMNLSKARS----FPPSSPSPSVSSMQSPYEEEKAKFLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGG---DESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPFGV 265
            MDAETP  RLLRPQAL+Q   L  Y  T  YRM+L KARS              SS+ +   + K K L            +TDSQA DVVH WT+ P      D+     Q+ V +TTFS++MI +MSGGRL AFVEG+ R   +       K G   +VLI EACNH RI    DDIGTVQ+P  LR+ F      + HA+GRE+  + L D  Y +V+HCGGCM+D+QK+ AR+ +    GV  TNYGLLL+Y AA Q + R +RP+G+
Sbjct:  216 MDAETPSGRLLRPQALVQEELLRQYASTFCYRMDLKKARSPIEEERREEEQRFRSSVDALKSQNKLKLL------------ITDSQATDVVHKWTMEPGTAAPSDQGGQSSQETVPLTTFSVMMINYMSGGRLSAFVEGIKRFETL-------KHGD--KVLICEACNHDRIQ---DDIGTVQIPAKLRQRFGEGTIGVDHAFGREYQTKILND--YQLVIHCGGCMLDQQKMAARLSDIEGSGVPITNYGLLLSYLAAKQGLSRVLRPWGL 461          
BLAST of EWM24362.1 vs. NCBI_GenBank
Match: gi|873225321|emb|CEM24053.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 226.483 bits (576), Expect = 1.008e-63
Identity = 125/274 (45.62%), Postives = 175/274 (63.87%), Query Frame = 0
Query:    1 MDAETPLTRLLRPQALLQAFCLHHYIPTIAYRMNLSKARSFPPSSPSPSVSSMQSPYEEEKAKFLSLLSLLPPGS----LVVTDSQAIDVVHAWTLPPLGGDESFTKLQKP-VDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQD----GRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPFGV 265
            MDAETP  RLLRPQA++Q   + HY  T+AYRM+L+KARS  P+             +EEK++FL +L+++   +    L++TDSQA+D+VH WTL P+          +P +DITTFSI ++   SGG+L  FVEG+ R        +  K+G   RVL+AE CNH RI + C+DI TVQLP  +R A       + HA+GREFP    Q     G Y +V+HCGGC ID+QKV+AR+++  + GV  TN+GLLL+Y AAP+A+ RA++P+G+
Sbjct:  741 MDAETPAGRLLRPQAMVQESIIRHYGTTVAYRMDLAKARSSDPAE-----------VQEEKSRFLKMLNMVLQQTAGPKLLITDSQAMDIVHPWTLDPV--------TNRPLIDITTFSIALLHRQSGGQLPTFVEGLERF-------KHIKQGD--RVLVAEGCNHNRITQLCNDIATVQLPGHIR-AQGGASIAVDHAFGREFPDIEDQSDKGLGAYSLVIHCGGCYIDKQKVQARVDDLREMGVPVTNFGLLLSYVAAPEAVDRALQPWGL 985          
BLAST of EWM24362.1 vs. NCBI_GenBank
Match: gi|1183319880|gb|ORX49704.1| (P-loop containing nucleoside triphosphate hydrolase protein [Piromyces finnis])

HSP 1 Score: 216.468 bits (550), Expect = 3.763e-63
Identity = 113/263 (42.97%), Postives = 161/263 (61.22%), Query Frame = 0
Query:    1 MDAETPLTRLLRPQALLQAFCLHHYIPTIAYRMNLSKARSFPPSSPSPSVSSMQSPYEEEKAKFLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGGDESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPF 263
            MDAETP  RLLRPQ+  Q FCL H+  T AYRM+L K RS        +VS      E EK +F   +  + P S+++TDSQA+D+V  W  P     + F  +Q    +TTFSI+MI  M+ G+L  F++G+  L  ++   +         +LI+EACNH R+ + C+DIGT Q+P  L+R   +    I HA+GREFP + L++  Y +VVHCGGCMID+QK+ AR+++C +  +  TNYGLLL Y  +P+A+ R  +PF
Sbjct:  256 MDAETPGGRLLRPQSKCQEFCLSHFTSTYAYRMDLIKGRS-----NDSNVS------ETEKKRFQDAIERIKP-SIIITDSQAMDLVGRWVSP-----DKFPNVQ----LTTFSIMMINQMTDGQLPKFIKGLEVLKSLKSNDK---------ILISEACNHNRLTDICEDIGTKQIPDKLKRKLGN-SIVIDHAFGREFPSKELKE--YSLVVHCGGCMIDKQKMCARLDDCIENNIPITNYGLLLTYLNSPKALKRVTKPF 485          
BLAST of EWM24362.1 vs. NCBI_GenBank
Match: gi|1183412690|gb|ORY37143.1| (P-loop containing nucleoside triphosphate hydrolase protein [Neocallimastix californiae])

HSP 1 Score: 215.698 bits (548), Expect = 5.350e-63
Identity = 111/263 (42.21%), Postives = 157/263 (59.70%), Query Frame = 0
Query:    1 MDAETPLTRLLRPQALLQAFCLHHYIPTIAYRMNLSKARSFPPSSPSPSVSSMQSPYEEEKAKFLSLLSLLPPGSLVVTDSQAIDVVHAWTLPPLGGDESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPF 263
            MDAETP  RLLRPQ+  Q FCL H+  T AYRM+L+K RS                 +++K K           S+V+TDSQA+D+V  W  P     + F  +Q    +TTFSI+MI  M+ G+L  F++G+  L  M+  ++         +LI+EACNH R+ + C+DIGT Q+P  LR++       I HA+GREFP+  L++  Y +VVHCGGCMID+QK+ AR+E+C +  +  TNYGLLL Y  +P+A+ R  +PF
Sbjct:  261 MDAETPGGRLLRPQSKCQEFCLSHFTSTFAYRMDLAKGRS-----------------KDKKVK----------PSIVITDSQAMDLVGRWVSP-----QKFPNVQ----LTTFSIMMINQMTDGQLPQFIKGLNTLKTMKPNSK---------ILISEACNHDRLTDICEDIGTKQIPDKLRKSLGD-SIVIDHAFGREFPYDKLKE--YSLVVHCGGCMIDKQKICARLEDCIENNIPITNYGLLLTYLNSPKALKRVTKPF 475          
BLAST of EWM24362.1 vs. NCBI_GenBank
Match: gi|931448782|gb|KPK32771.1| (hypothetical protein AMS24_03225 [Chlamydiae bacterium SM23_39])

HSP 1 Score: 204.527 bits (519), Expect = 3.871e-59
Identity = 111/267 (41.57%), Postives = 158/267 (59.18%), Query Frame = 0
Query:    1 MDAETPLTRLLRPQALLQAFCLHHYIPTIAYRMNLSKARSFPPSSPSPSVSSMQSPYEEEKAKFLSLLSLLPPGSL--VVTDSQAIDVVHAWTLPPLGGDESFTKLQKPVDITTFSIVMIQHMSGGRLGAFVEGMTRLVEMEEEARQAKEGKEARVLIAEACNHVRIPEACDDIGTVQLPQALRRAFPHLGFHIHHAYGREFPWQALQDGRYDVVVHCGGCMIDRQKVRARMEECADGGVATTNYGLLLAYAAAPQAMLRAVRPFGV 265
            MD ETP  RLLRPQA +Q   L  YI T AYRM+L KAR+  P+             E+EK +F   + LL   +L  ++TDSQAID++H WT              + ++ITTFSI+M   +S G+L  FVEG+  L       +  K+G   ++LIAEACNH RI E   DIGTVQLP+ L   +      I HA+GRE  +  LQ  +Y +++HCGGCM+D+QK+++R+ +     +  TNYG++L+Y  +PQ + R ++PFG+
Sbjct:  198 MDEETPRNRLLRPQAYVQENFLRRYIATFAYRMDLIKARN--PNKKQQ---------EQEKKRFQKTIKLLQEQNLKLLITDSQAIDIIHPWT--------------RGLEITTFSIIMADIVSRGKLNLFVEGLKVL-------KSLKKGD--KILIAEACNHNRIKE---DIGTVQLPKKLNFIYGKDNIIIEHAFGREVDFLDLQ--KYKLIIHCGGCMLDQQKMQSRIIDLMQAKIPITNYGIILSYFQSPQTLRRVLKPFGL 425          
The following BLAST results are available for this feature:
BLAST of EWM24362.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105758|gb|EWM24362.1|0.000e+0100.00small gtp-binding protein [Nannochloropsis gaditan... [more]
gi|553193001|ref|XP_005855690.1|0.000e+099.21small gtp-binding protein, partial [Nannochloropsi... [more]
gi|1039092112|gb|ANM86879.1|2.536e-6844.03HydF [Stygiella incarcerata] >gi|1039092159|gb|ANM... [more]
gi|469474145|gb|AGH33866.1|1.474e-6747.62hydrogenase maturase HydF [Paratrimastix pyriformi... [more]
gi|1183353349|gb|ORX81238.1|5.523e-6744.49P-loop containing nucleoside triphosphate hydrolas... [more]
gi|470487644|ref|XP_004344717.1|6.336e-6445.59iron hydrogenase assembly protein [Acanthamoeba ca... [more]
gi|873225321|emb|CEM24053.1|1.008e-6345.62unnamed protein product [Vitrella brassicaformis C... [more]
gi|1183319880|gb|ORX49704.1|3.763e-6342.97P-loop containing nucleoside triphosphate hydrolas... [more]
gi|1183412690|gb|ORY37143.1|5.350e-6342.21P-loop containing nucleoside triphosphate hydrolas... [more]
gi|931448782|gb|KPK32771.1|3.871e-5941.57hypothetical protein AMS24_03225 [Chlamydiae bacte... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6329rna6329Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications