rna6321, rna6321 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6321
Unique Name	rna6321
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1570
Alignment location	CM002468.1:242327..245284 -

Link to JBrowse

Properties


Property Name	Value
Product	glutamine-fructose-6-phosphate transaminase
Orig transcript id	gnl\|cribi\|Naga_100246g4.10063.mrna
Orig protein id	gnl\|cribi\|Naga_100246g4.10063
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:242327..245284 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100246g4	gene6110	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24368.1	cds6306	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6321	rna6321-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:242327..245284-
coding sequence from alignment at CM002468.1:242327..245284-

mRNA sequence

>rna6321 ID=rna6321|Name=rna6321|organism=Nannochloropsis gaditana|type=mRNA|length=1570bp
TAATTACTGTCGCTCTGATTTTAAGGGCCATATAGTCATAGCTTATATAT
ACCCGACTACAGGGGGCCTTATATGCACAAAGGCATACTACGTTTGAGCA
GTATATTTCTTATACACTCGGCCTACTTTTGTAGCACCTTCAGACTCATC
GGCACAAACAGGCTGCGCACTCTTTTTCCGCAATCCCGTTTGTACGCCCC
AACTCTTGTGGCGTGGGTGAAGGATCAACCAGCAGACTTGCAAGAGACGT
TTGGAGACCGCTTTCAAGATAGTGACCACAAAGAAGGACAAAAAGAACAC
ATGGCTCGTAAAACCACAGCAGATCCTATCAAAGATAGCAGCACTAAGGT
CAGTGCTGCCAAAAAAGCTTCTCCTAAGAAGAAGGCCGAGGCACCGGGGA
AAAGCAGGAGCGGTACGAATTCTGTGATACAGAATACGAAATTGAGTGCT
GAAAATAAAGCTGAAAGAGAATTCAAGACCCCACGTCGGTACAAGGAAGG
AAGTACAAAACAAAAAACACGAAGAGGCAAAAGTCCTGAAGATCTTGAGG
ACGATGTGGAGGTGATGGCGGAGAAAGTGGGAATCGAGCTACCTGAGGAC
GAAAAGCAGAAAGAGGAGGAGGTGGAAAGTGCCATCGAAGCGACGAGCGA
TCGCCCATACCGCGAGTATTCCAAACAAGGCGCCCTTGAGGTATGATTGA
TTTGTAAGAGAAAAGAAATTGAAAAAAACACATAAAGTGACGGAGAATAA
GGCGGGGGAAGGAGACCCGTTCTCCGACGCCGCCAGACGTGCTCCTAAAT
CTAAGCGCGGAATCAATGCCCCCCCTTCGAAAGAAGAGAAAGATGTACCT
CCGACAAAGCGTCACACCAAAGCTGGAGACATGAGTGAACGTAGCAAGGT
TACAAATGAAAAGAATCGTCCGTTGGCCGACGCCTTATATGAGCTGGCCG
ACTTCGTGCTGCACGGTGACGCGATTCAGAAGGGGCTGAGTTACCAGAAA
GCAGCTAAATCAGTACGTGAGGCGAAGCAACCTATCACATCCAAAGATGT
AGCCATCAAATTGACAGGGGTTGGGAAAAGCGTGGGTGATAAAATCGAAG
AGTACGTGAAGGAAGGGAAGATCCAGGTGCTGGAAGAGTACCGAAGCGGA
AAACGAGGCAAGTAAGGATAGGGCTCCCGTGTGAAGAATGGTGCGAAACG
AGAGAAGACACACGTAGATGGACGAATCCAGCTACGGCGATACAAATGCG
TAAGATGTGTTGGTGTATTGAATTGAGGGAATGGTTGCATGCTGGTTGCT
CCAGATTTGTCTGAAATGGTAGTTTGAGGAGGAAGCTCAATTGAGAAGAA
CATGTGCTTCGGATTGCAAGCTTGTATACTTGTAAAAGACTGAAAAAAAT
CTGACCACACAAAAGTGGTGTTAGTTTTTCAACATTTGGGTGCTGCATTT
CTCCTCGGCATGTTTTGAGCCTTCTGGGTGAAGCTTGGGATGTGACCCAC
GGGTTTGAGGAGAAAGAAATAAAAAATGAAAGTAGTGATCCGCTAAATTC
ACTTGGCGAGACATCTGCTT

protein sequence of rna6321

>rna6321-protein ID=rna6321-protein|Name=rna6321|organism=Nannochloropsis gaditana|type=polypeptide|length=719bp
MHAQVSSVLVRRGSRHAWASTVIKMTSSFSGNFAQKNSSRQRYPQQNVVG
RYASRAAYMSPGSSSSSSSSSSFMRWGWGLAAATAALGALSERQDSPTEA
CGIVGVIGEDDARSILMEGLTVLQNRGYDSAGIATISPHDNVLTVTKYAS
AGSTYDCIDLVKENSHRHKGHHVGIAHTRWATHGGKTDLNAHPHTDSKGR
VAVVHNGTITNSHELRHELQHAHGIKFVSETDTEIIAQLIGLGLDENLSL
KDATAEALKRCDGTWGLVVLAPKEPDELVVACNGSPMVLGIGEGRVFIAS
ETSAFNRHTKNFIALKDGELGVVRADGSTLDLTRVQKAPDVNILLSPAPY
PHWTIRECMEQPEAIARALGFGGRMSDTRVYLGGLDRQKERMQSIKHLVL
TGCGTSLHAAMYAAKLMRDFEAFRTVMAVDAAEVRLSDLPKHHAGLLAIS
QSGETKDVHRAVVLADRMGLPTMSVVNTVGSLIARTTKLGVYLNAGRESS
VASTKAFTTQVTVLTLITAWFRQVREEAGEEALPGRVTELLEALQRMPIG
FGMARRTREQCAELAVRLKDKEHVFLLGKGYGEPIALEGALKLKEMAYIH
AEGYSGGALKHGPFALIEGKEGKFGATPIICLILDDEHAQHMRTAAEEVK
ARGADLIVITDNPKLARGLVPDPIIVPNNGPLTALIATLPLQLLAYELAV
LRGINPDKPRNLAKAVTVD

mRNA from alignment at CM002468.1:242327..245284-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6321 ID=rna6321|Name=rna6321|organism=Nannochloropsis gaditana|type=mRNA|length=2958bp|location=Sequence derived from alignment at CM002468.1:242327..245284- (Nannochloropsis gaditana)
GGAGCGAGCCCGCGTGCTTTCATCTTTTCGACTGAAAACGATTTTTATAA
TTCAACTTACGTCGTCTCTACCCTCACGTTTCTACCAAATAAAATTAAAA
ATTGAAACAGCAACACCAGTGAAGTAGGGTGAAGAGCAAGCCAGGGATGC
ATGCGCAGGTTTCTAGTGTCCTAGTGCGGCGAGGGAGCAGGCATGCTTGG
GCAAGCACAGTGATCAAGATGACGTCCTCCTTTTCCGGTAACTTCGCCCA
AAAAAACTCGTCCAGACAACGATACCCACAACAAAATGTGGTAGGAAGGT
ATGCCAGCAGGGCAGCCTACATGAGCCCCGGTAGCTCCTCCTCCTCTTCC
TCCTCTTCCTCGTTCATGCGGTGGGGCTGGGGTCTGGCAGCGGCTACTGC
TGCCCTAGGTGCACTCTCAGAGCGGCAAGACTCGCCCACAGAAGCTTGTG
GGATTGTTGGTGTAATCGGAGAGGACGACGCTCGTTCCATTCTAATGGAG
GGTCTGACCGTGCTGCAAAATCGGGGGTACGACTCTGCCGGAATAGCGAC
CATCTCCCCGCACGACAACGTATTGACCGTCACGAAGTATGCCTCCGCGG
GCTCCACGTACGACTGCATCGACCTGGTCAAGGAAAATAGCCACCGGCAC
AAGGGGCATCACGTGGGGATTGCCCACACTCGATGGGCCACACACGGGGG
CAAGACCGACCTGAACGCACACCCCCACACGGACAGCAAGGGCCGGGTGG
CGGTAGTGCACAACGGCACCATCACCAACAGCCACGAGCTTCGACACGAA
CTCCAGCATGCTCACGGGATCAAGTTTGTCTCCGAGACGGACACGGAGAT
CATCGCGCAGTTGATCGGCCTGGGCCTGGATGAGAATTTGAGCTTGAAAG
ATGCGACCGCAGAGGCCCTAAAACGCTGTGACGGTACGTGGGGCCTGGTG
GTGCTCGCTCCCAAAGAGCCCGATGAATTGGTGGTGGCCTGCAACGGCTC
GCCCATGGTGCTGGGCATTGGGGAAGGCCGGGTCTTCATCGCCTCGGAGA
CGTCTGCCTTCAACCGGCACACCAAAAATTTCATTGCCCTGAAAGATGGG
GAGCTGGGAGTGGTCCGGGCGGACGGGTCCACCTTGGACTTGACGCGCGT
GCAGAAAGCGCCAGACGTGAACATCCTCCTCTCCCCTGCCCCGTACCCGC
ACTGGACGATCCGCGAGTGTATGGAACAGCCAGAAGCGATCGCCCGAGCC
CTAGGCTTTGGGGGCCGCATGAGCGACACGCGCGTCTACCTGGGAGGATT
GGACCGACAGAAGGAACGGATGCAAAGCATCAAGCACCTGGTTCTGACCG
GGTGTGGCACGTCCTTGCATGCGGCTATGTACGCGGCGAAATTGATGCGG
GACTTCGAAGCCTTCCGCACCGTCATGGCAGTCGACGCGGCGGAAGTCCG
GCTATCCGACCTACCCAAGCACCACGCCGGCCTCCTAGCCATTTCCCAGT
CGGGGGAAACCAAGGACGTGCACCGGGCGGTGGTGCTGGCGGACCGAATG
GGCCTCCCCACCATGTCGGTGGTCAACACGGTTGGCTCCCTCATCGCCCG
CACCACCAAACTCGGGGTCTACCTGAACGCCGGGCGCGAGTCCTCCGTGG
CCAGTACCAAGGCATTCACCACGCAGGTGACGGTGCTGACCTTGATCACG
GCCTGGTTCCGGCAGGTTCGGGAAGAGGCCGGGGAGGAGGCACTCCCGGG
GCGGGTGACAGAGCTTCTAGAAGCCCTGCAACGGATGCCGATCGGTTTCG
GAATGGCCCGACGGACGCGGGAACAGTGCGCGGAGTTGGCCGTTCGTCTC
AAGGACAAGGAGCACGTCTTCTTGTTGGGGAAAGGGTACGGGGAGCCGAT
CGCTTTGGAAGGGGCGTTGAAGCTCAAGGAGATGGCCTACATCCATGCCG
AAGGTTACTCCGGGGGGGCCCTCAAACACGGGCCCTTCGCCCTCATAGAG
GGCAAAGAGGGAAAGTTTGGCGCCACCCCCATCATTTGTCTGATCCTCGA
CGACGAACATGCTCAGCACATGCGCACGGCTGCCGAAGAAGTCAAAGCGC
GGGGGGCGGACTTGATAGTCATCACCGACAACCCGAAATTGGCCAGAGGG
CTGGTCCCTGATCCGATCATCGTCCCGAATAACGGTCCGTTAACGGCGTT
GATCGCCACCTTGCCGCTGCAACTGCTTGCCTACGAATTAGCGGTTTTGC
GAGGGATCAACCCTGACAAGCCTCGGAACTTGGCCAAGGCGGTGACGGTC
GATTGACTCGCATACGACGGGGAGGAAGATCGCACAAGACAGGAAAAGGA
AGAGTGGTTGCGAAAGCGAAGGGCGACGTGGGCCTGGGTGCAAGAACAAA
TGCGCTTGCGACAGGAATTGGAAGAAGGGAACACGAGGGAAATTGATTTT
GTGGAAGGAGGGGAGGAGGAAGACGTGGAGGAAGGAGACGGGTACTTTAC
GGAGAACGACCTGGTGGAAGGGAATCAGATGCGTATGGCGGTACTGATCT
AGCCCGGCCTGCGACGATTTAAACAATTCAAAGTAAATGGGAAAGAATGA
GGATAGAGCGCAGTTTCAAGTGTACAGTATCCAAAAGCGGGACCATGCAG
GAGGAAGATGGCGTGGCGTTTCCTTATAACCAAAATCATTTGGGCAACAG
GGACGCACACCACCTCACGACTGTGTCAAGCAGGAAAGAAAGTAGACGAA
GGCAGCGAATAGTTATAGAACAGGGTATGGAGAGAGAAGGTCGAAGGTAA
AGGCGAGAACCCTGCGAGGGATGGCACTATCCAGCACACACATCCATCGC
GAATGATCGCCCGTAAAGTCAAAGATCCTCTTAAATCATGAAGATGTGGC
TACAGGAGACATCTAAGCGATACAATTGTCGCATCAAATCCAAGCAGATG
TCTCGCCA

Coding sequence (CDS) from alignment at CM002468.1:242327..245284-

>rna6321 ID=rna6321|Name=rna6321|organism=Nannochloropsis gaditana|type=CDS|length=2160bp|location=Sequence derived from alignment at CM002468.1:242327..245284- (Nannochloropsis gaditana)
ATGCATGCGCAGGTTTCTAGTGTCCTAGTGCGGCGAGGGAGCAGGCATGC
TTGGGCAAGCACAGTGATCAAGATGACGTCCTCCTTTTCCGGTAACTTCG
CCCAAAAAAACTCGTCCAGACAACGATACCCACAACAAAATGTGGTAGGA
AGGTATGCCAGCAGGGCAGCCTACATGAGCCCCGGTAGCTCCTCCTCCTC
TTCCTCCTCTTCCTCGTTCATGCGGTGGGGCTGGGGTCTGGCAGCGGCTA
CTGCTGCCCTAGGTGCACTCTCAGAGCGGCAAGACTCGCCCACAGAAGCT
TGTGGGATTGTTGGTGTAATCGGAGAGGACGACGCTCGTTCCATTCTAAT
GGAGGGTCTGACCGTGCTGCAAAATCGGGGGTACGACTCTGCCGGAATAG
CGACCATCTCCCCGCACGACAACGTATTGACCGTCACGAAGTATGCCTCC
GCGGGCTCCACGTACGACTGCATCGACCTGGTCAAGGAAAATAGCCACCG
GCACAAGGGGCATCACGTGGGGATTGCCCACACTCGATGGGCCACACACG
GGGGCAAGACCGACCTGAACGCACACCCCCACACGGACAGCAAGGGCCGG
GTGGCGGTAGTGCACAACGGCACCATCACCAACAGCCACGAGCTTCGACA
CGAACTCCAGCATGCTCACGGGATCAAGTTTGTCTCCGAGACGGACACGG
AGATCATCGCGCAGTTGATCGGCCTGGGCCTGGATGAGAATTTGAGCTTG
AAAGATGCGACCGCAGAGGCCCTAAAACGCTGTGACGGTACGTGGGGCCT
GGTGGTGCTCGCTCCCAAAGAGCCCGATGAATTGGTGGTGGCCTGCAACG
GCTCGCCCATGGTGCTGGGCATTGGGGAAGGCCGGGTCTTCATCGCCTCG
GAGACGTCTGCCTTCAACCGGCACACCAAAAATTTCATTGCCCTGAAAGA
TGGGGAGCTGGGAGTGGTCCGGGCGGACGGGTCCACCTTGGACTTGACGC
GCGTGCAGAAAGCGCCAGACGTGAACATCCTCCTCTCCCCTGCCCCGTAC
CCGCACTGGACGATCCGCGAGTGTATGGAACAGCCAGAAGCGATCGCCCG
AGCCCTAGGCTTTGGGGGCCGCATGAGCGACACGCGCGTCTACCTGGGAG
GATTGGACCGACAGAAGGAACGGATGCAAAGCATCAAGCACCTGGTTCTG
ACCGGGTGTGGCACGTCCTTGCATGCGGCTATGTACGCGGCGAAATTGAT
GCGGGACTTCGAAGCCTTCCGCACCGTCATGGCAGTCGACGCGGCGGAAG
TCCGGCTATCCGACCTACCCAAGCACCACGCCGGCCTCCTAGCCATTTCC
CAGTCGGGGGAAACCAAGGACGTGCACCGGGCGGTGGTGCTGGCGGACCG
AATGGGCCTCCCCACCATGTCGGTGGTCAACACGGTTGGCTCCCTCATCG
CCCGCACCACCAAACTCGGGGTCTACCTGAACGCCGGGCGCGAGTCCTCC
GTGGCCAGTACCAAGGCATTCACCACGCAGGTGACGGTGCTGACCTTGAT
CACGGCCTGGTTCCGGCAGGTTCGGGAAGAGGCCGGGGAGGAGGCACTCC
CGGGGCGGGTGACAGAGCTTCTAGAAGCCCTGCAACGGATGCCGATCGGT
TTCGGAATGGCCCGACGGACGCGGGAACAGTGCGCGGAGTTGGCCGTTCG
TCTCAAGGACAAGGAGCACGTCTTCTTGTTGGGGAAAGGGTACGGGGAGC
CGATCGCTTTGGAAGGGGCGTTGAAGCTCAAGGAGATGGCCTACATCCAT
GCCGAAGGTTACTCCGGGGGGGCCCTCAAACACGGGCCCTTCGCCCTCAT
AGAGGGCAAAGAGGGAAAGTTTGGCGCCACCCCCATCATTTGTCTGATCC
TCGACGACGAACATGCTCAGCACATGCGCACGGCTGCCGAAGAAGTCAAA
GCGCGGGGGGCGGACTTGATAGTCATCACCGACAACCCGAAATTGGCCAG
AGGGCTGGTCCCTGATCCGATCATCGTCCCGAATAACGGTCCGTTAACGG
CGTTGATCGCCACCTTGCCGCTGCAACTGCTTGCCTACGAATTAGCGGTT
TTGCGAGGGATCAACCCTGACAAGCCTCGGAACTTGGCCAAGGCGGTGAC
GGTCGATTGA

Synonyms

Publications