rna6316, rna6316 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6316
Unique Name	rna6316
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2211
Alignment location	CM002468.1:233691..235517 +

Link to JBrowse

Properties


Property Name	Value
Product	nad-dependent epimerase dehydratase
Orig transcript id	gnl\|cribi\|Naga_100246g10.10065.mrna
Orig protein id	gnl\|cribi\|Naga_100246g10.10065
Gene	38
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:233691..235517 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
38	gene6105	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6316	rna6316-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24370.1	cds6301	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:233691..235517+
coding sequence from alignment at CM002468.1:233691..235517+

mRNA sequence

>rna6316 ID=rna6316|Name=rna6316|organism=Nannochloropsis gaditana|type=mRNA|length=2211bp
GCCACGGGACAAAAATCATAGGACACGCACAGCCGTAGAGAGCTCCTTTG
CCCTCTAACATGTCGTTTTCAATATACCTCGGGTCGTCATGTGTTATTTC
TATGTACATTTATCTCCTTCCCCCGTCCCGACCTCATTCTTATCAAGACA
CTTGTCATGACATACATCGTTTAGGCTCGAGCGCATGGGCGGATGGGACA
TGAATGGCAGGAAATGTGAAGGAGAAAGATGGAGGGATGACAATGTTGAC
GACATCTTGCTGAATTCTTCTTGGAGCACACCCGTTCCTCTAGGTGCTGC
GCCTTGGGGTATCGCACACACAGGCATGCACCAGGCCTTCGACCCCGGGA
AGGCCGAGGTCTTTTCCGCTTCAAAAGCCCAAATTTGTGATATTGATGAC
CGCAGTAGCAACTTGCACAGTCATAAAGGTGCGGCCTTCCACTGGGACGA
TGACCACGACTCCCTCTCTCGTCGCCTGAGCCTTCTTCTCCTCGAGTTCG
ACCGCGTATGTGACCTTCCCAGTGGTACCTGTGACGTTCCTTTTGGAACG
ACCCCTGCTTTAGAAGCACGTGACACGCTGGTGTCGGCTTCTCCAGGTTG
TTCGGACGCTGTCGCGATGCCTCCTGCTGACCCGCGCAGGTCGCCTACCG
TCATGTCCGAGGCCCTTGCTGCCGAGTTGGTGGGCGTCATGTCTCAATGC
TGTGCCCGCCTGCAAGACGATGAGGGCAACGGGGAGGACGGGGAAGGCAG
GAAGGACGACGTTTTGCGGGCATGCGTCTGGATTCCTTGCCTCCCCCCCC
CGCGCAACTCGCGTGACGTCCCCCCCCAAGGAGGCTTTCCTTTACGGCAA
GAGCATCGCGAGGAGAGGCCAAGCGAGCAATTTTTCACGATGATCTGCCG
GCTCATGGGTCGGAGGGATGCTCCTGTCGGGTTGGTGCGCCAGTTTTGTC
GCCACGCGGTCTTACCCCGCTTGCTTCGTCTTCAGGGAGCCGCCTCGCGT
TCGCTCATCGATGCCCTCGCACGCCTAGCCTCCCTCCGTCCCTCCCTTGT
CCTCACCCACGTCCTCGTCCCCCTCCTCTGCCAGCCGGCGGGGTCCCTGG
GCTCCGTGCAATGCGAGGCGGTCGCTCGGGTGATCAAGCAGGGATGTTTT
GGAATGGGGGAGGAAGGAAGTGGGGGCTTTGGTGGGAGGAGAGGCGTGTA
CCTGGAGAAGTTGCTCCGAGGGTTGTGTGGTTGGGACTTGTCGCTGAATC
TCGGCGATGAACGTGGGAACGGTGCGCAGGAGAGAAAAAGTCCAGAGGTC
GTGGAGGGGGAGGAGAGCCGTGGTCTGGAAGGGAATGAGAAGGAAGGGAG
GAGTGAGAAGAGAAGAGGGGGCGGCGGGTTGGAGCATGGGAGGGCGATGC
TTTACCCTGTGTGTGAGTGGACAGATGTAACACTGCCGGTGCTGACGGCG
GTTCTGGGCCAGCGCCCCACTTTGTCAGATGAGACCGTACTGGTTGTACT
GGAGCGACTACGGGCTGCATTGGAGGTGGGTGTTGCGGACCAGGGGGGGC
GGCAGGGTCACAGGTGTGCTCAGCGGGAACACAGAGACTTCGATGGTCTT
CAGAAGGCAGGAGCATAGCTGCATAGGGGAAGAGAGATACTGTATTGATT
AGATTTTATGCCTTTCCACACATGTATATGTGGTGATTGGGAGGATTTCG
GTCCATGCAAATGCTCATGCATCCTTGCAACCTTTTCCCACATGCTTTTT
ATTTTTTACTCTTGACATCAGGGCGGCGGTGATCTGATGCATTCTTTCAA
GCTCGCTGCATTAATAAATGCGCTTCAAAGTAAGTACGGCCCTCAAATGC
AACTTTTTCCCACCGTGATGCGTCACATTATCTCAATATGTGAGGAGGGG
GAGGGAAGGGACGGTGCAAAAGGGGGCTGCAGCAACAGTTGGAGCAAGAA
TCACAAAAATGGCGGTGGGGCAACATTGATACGCAACACCCTACGTAAAG
TTATCCTGTCAATATCCGAATAAAAACTCAAAACTTGAAAATGTGAATTG
GAAAAATGTGCAGTTGGAGTAGGATAAATCAATTTTTCCGTGATGTTCAC
AACAAAGAGTAGCCTTGTTTACCTTTAATTTTTCGTAGGATAACGTGGTC
AATTTTCAGTATCGGTCACAAGATAAAATGAGGCAACAAATGGAAATGAA
ATGACGCCCAT

protein sequence of rna6316

>rna6316-protein ID=rna6316-protein|Name=rna6316|organism=Nannochloropsis gaditana|type=polypeptide|length=383bp
MRAHIHALALLALMAGALGFQVRELFVIFMPLALVPMWPFDPLLYLPPPQ
IPMTMKAPGAGKKVLIIGGTRFSGLYLFKELHDRGYDITLFNRGKTANRP
VPGESAESYAERIGQATFVKGDRTNPDDLAALAKAHEFDVIYDMNGREKT
DTQPLADAYNGRVDHFVYMSSAGVYLKSDLMPHKETDPVDPKSRHKGKFE
TETYLAEKGLPFTSIRPTYIYGPQNYNPLEEYFFHRVVAGRAVAVPGHGQ
HLTGLGHVKDLATAMAQVIGREQAKGQVYNVQHPQAITFDGAVRLAAKAA
GKDPESVEIVHYDPKEYDFGKKKAFPMRPQHFFTSVEKAMRDLDWTPAYG
NTEGWQDSFDQDYALRTHEPDFECDEVVLAGKK

mRNA from alignment at CM002468.1:233691..235517+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6316 ID=rna6316|Name=rna6316|organism=Nannochloropsis gaditana|type=mRNA|length=1827bp|location=Sequence derived from alignment at CM002468.1:233691..235517+ (Nannochloropsis gaditana)
GCGTGATAGTGTCGCTCACATGTGACCTGCATGCTTGTGTGGGGTTTTAA
CAGGTGCTGAATAAGAGCTTGTCGTCATTTTTATAAATTTTGATGCGATT
CTGTGGAGTTGTGAGGGACGTAATACACAACCCTGTCTTTGTTCCGCAAA
TGCATACCAGGTAGTTTGACCACGTCGAAACCCGGTTACAAGAAAGTGCT
GCTACGATGCGCGCGCACATCCACGCACTGGCCCTGTTAGCATTGATGGC
TGGAGCGTTGGGTTTCCAGGTACGTGAGCTATTTGTAATTTTCATGCCTC
TTGCGTTAGTCCCGATGTGGCCGTTTGATCCCTtgctctacctccccccc
ccccagatCCCAATGACGATGAAAGCTCCTGGTGCTGGAAAGAAGGTCCT
TATCATTGGAGGGACACGTTTCAGTGGCTTATACCTCTTCAAAGAACTCC
ATGACCGGGTACGAGCCCTTTGCATTAAGTTCCTCCACGCCATATGCCAG
CTTACTCGTCTCTGTAGTCTGATATGCCCTCTCTGTTGTGAAAATTTTTC
ATCCCCATGTCTACCATTCTAAGCGTCTTCATCATGATCACGGTCTACGC
AGGGCTACGACATCACGCTTTTCAACAGGGGTAAGACAGCGAACCGCCCG
GTTCCAGGAGAGAGCGCCGAGTCATATGCAGAGCGGATCGGTCAAGCCAC
GTTTGTGAAGGGGGATCGCACCAATCCCGATGACCTCGCTGCACTCGCCA
AGGCGCATGAATTTGACGTCATATACGACATGAACGGGAGAGAGAAAACG
GACACGCAGCCATTGGCCGACGCGTATAATGGCAGAGTGGACCATTTCGT
CTACATGTCTTCGGCAGGCGTCTACTTGAAAAGCGACTTGATGCCTCACA
AGGAGACCGACCCCGTCGACCCCAAGTCCCGACACAAAGGGAAATTCGAA
ACCGAAACGTATTTGGCGGAAAAAGGCCTTCCTTTCACGTCTATTCGGCC
CACCTACATTTACGGTCCTCAAAACTACAACCCTCTCGAGGAATACTTCT
TTCATCGTGTCGTGGCCGGGAGAGCGGTGGCCGTTCCAGGGCATGGGCAG
CACTTGACGGGCTTGGGCCATGTCAAAGATCTGGCCACGGCGATGGCGCA
AGTGATCGGGCGGGAGCAGGCCAAAGGGCAGGTCTACAATGTCCAGCACC
CGCAAGCCATTACCTTCGACGGTGCCGTGCGActggccgccaaggccgct
gGGAAAGATCCGGAGAGCGTGGAAATCGTTCATTATGACCCCAAGGAGTA
TGATTTcggcaagaaaaaggcattCCCGATGCGGCCTCAACATTTTTTTA
CGAGCGTGGAAAAAGCCATGCGAGATCTGGATTGGACGCCGGCCTACGGG
AATACGGAGGGGTGGCAAGACTCTTTCGACCAAGATTATGCCTTAAGGAC
ACATGAACCAGATTTCGAATGTGATGAGGTGGTCCTGGCAGGAAAGAAAT
AatgaagaaaggagggacagaaggaTGGTGAAAGTCCTAGAAAAAGTGCG
AGGGAAGCACGCGCTTGTGCGGTGGTTCGCGCTGTTtcggggaaaagggg
ctTCATCTTATAGTCGTGGTAGAGTATTTGCATATCTGCGGGAAACCGCC
GAGTCGAGGAGCGGACTCGACGAGATCTCCCGTATGAGACTAGCGTAAAA
GCGCGCGAAACGGTTAAGGGACTGCAGTGGTATATTAAAGAAGACTCGTC
GGGAAAACAAGGTAGATGCCTTGCTCATCCGTTCGATAACGGCTGTTTGC
CCCTTTTTCCGACCCACGAAACAGTAC

Coding sequence (CDS) from alignment at CM002468.1:233691..235517+

>rna6316 ID=rna6316|Name=rna6316|organism=Nannochloropsis gaditana|type=CDS|length=2304bp|location=Sequence derived from alignment at CM002468.1:233691..235517+ (Nannochloropsis gaditana)
ATGCGCGCGCACATCCACGCACTGGCCCTGTTAGCATTGATGGCTGGAGC
GTTGGGTTTCCAGGTACGTGAGCTATTTGTAATTTTCATGCCTCTTGCGT
TAGTCCCGATGTGGCCGTTTGATCCCTtgctctacctcccccccccccag
atCCCAATGACGATGAAAGCTCCTGGTGCTGGAAAGAAGGTCCTTATCAT
TGGAGGGACACGTTTCAGTGGCTTATACCTCTTCAAAGAACTCCATGACC
GGGGCTACGACATCACGCTTTTCAACAGGGGTAAGACAGCGAACCGCCCG
GTTCCAGGAGAGAGCGCCGAGTCATATGCAGAGCGGATCGGTCAAGCCAC
GTTTGTGAAGGGGGATCGCACCAATCCCGATGACCTCGCTGCACTCGCCA
AGGCGCATGAATTTGACGTCATATACGACATGAACGGGAGAGAGAAAACG
GACACGCAGCCATTGGCCGACGCGTATAATGGCAGAGTGGACCATTTCGT
CTACATGTCTTCGGCAGGCGTCTACTTGAAAAGCGACTTGATGCCTCACA
AGGAGACCGACCCCGTCGACCCCAAGTCCCGACACAAAGGGAAATTCGAA
ACCGAAACGTATTTGGCGGAAAAAGGCCTTCCTTTCACGTCTATTCGGCC
CACCTACATTTACGGTCCTCAAAACTACAACCCTCTCGAGGAATACTTCT
TTCATCGTGTCGTGGCCGGGAGAGCGGTGGCCGTTCCAGGGCATGGGCAG
CACTTGACGGGCTTGGGCCATGTCAAAGATCTGGCCACGGCGATGGCGCA
AGTGATCGGGCGGGAGCAGGCCAAAGGGCAGGTCTACAATGTCCAGCACC
CGCAAGCCATTACCTTCGACGGTGCCGTGCGActggccgccaaggccgct
gGGAAAGATCCGGAGAGCGTGGAAATCGTTCATTATGACCCCAAGGAGTA
TGATTTcggcaagaaaaaggcattCCCGATGCGGCCTCAACATTTTTTTA
CGAGCGTGGAAAAAGCCATGCGAGATCTGGATTGGACGCCGGCCTACGGG
AATACGGAGGGGTGGCAAGACTCTTTCGACCAAGATTATGCCTTAAGGAC
ACATGAACCAGATTTCGAATGTGATGAGGTGGTCCTGGCAGGAAAGAAAT
AaATGCGCGCGCACATCCACGCACTGGCCCTGTTAGCATTGATGGCTGGA
GCGTTGGGTTTCCAGGTACGTGAGCTATTTGTAATTTTCATGCCTCTTGC
GTTAGTCCCGATGTGGCCGTTTGATCCCTtgctctacctccccccccccc
agatCCCAATGACGATGAAAGCTCCTGGTGCTGGAAAGAAGGTCCTTATC
ATTGGAGGGACACGTTTCAGTGGCTTATACCTCTTCAAAGAACTCCATGA
CCGGGGCTACGACATCACGCTTTTCAACAGGGGTAAGACAGCGAACCGCC
CGGTTCCAGGAGAGAGCGCCGAGTCATATGCAGAGCGGATCGGTCAAGCC
ACGTTTGTGAAGGGGGATCGCACCAATCCCGATGACCTCGCTGCACTCGC
CAAGGCGCATGAATTTGACGTCATATACGACATGAACGGGAGAGAGAAAA
CGGACACGCAGCCATTGGCCGACGCGTATAATGGCAGAGTGGACCATTTC
GTCTACATGTCTTCGGCAGGCGTCTACTTGAAAAGCGACTTGATGCCTCA
CAAGGAGACCGACCCCGTCGACCCCAAGTCCCGACACAAAGGGAAATTCG
AAACCGAAACGTATTTGGCGGAAAAAGGCCTTCCTTTCACGTCTATTCGG
CCCACCTACATTTACGGTCCTCAAAACTACAACCCTCTCGAGGAATACTT
CTTTCATCGTGTCGTGGCCGGGAGAGCGGTGGCCGTTCCAGGGCATGGGC
AGCACTTGACGGGCTTGGGCCATGTCAAAGATCTGGCCACGGCGATGGCG
CAAGTGATCGGGCGGGAGCAGGCCAAAGGGCAGGTCTACAATGTCCAGCA
CCCGCAAGCCATTACCTTCGACGGTGCCGTGCGActggccgccaaggccg
ctgGGAAAGATCCGGAGAGCGTGGAAATCGTTCATTATGACCCCAAGGAG
TATGATTTcggcaagaaaaaggcattCCCGATGCGGCCTCAACATTTTTT
TACGAGCGTGGAAAAAGCCATGCGAGATCTGGATTGGACGCCGGCCTACG
GGAATACGGAGGGGTGGCAAGACTCTTTCGACCAAGATTATGCCTTAAGG
ACACATGAACCAGATTTCGAATGTGATGAGGTGGTCCTGGCAGGAAAGAA
ATAa

Synonyms

Publications