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Properties
| Property Name | Value |
|---|
| Product | peptidyl-prolyl cis-trans isomerase |
| Orig transcript id | gnl|cribi|Naga_100508g3.5688.mrna |
| Orig protein id | gnl|cribi|Naga_100508g3.5688 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:206204..208070 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6303 ID=rna6303|Name=rna6303|organism=Nannochloropsis gaditana|type=mRNA|length=1644bp
TCTCGCTACCACCGCTCGACAGCTCCCTCCATTATGATCTGAATGCACCG
TGCTTCAGCCATGTGGGTGGATGCAGGAGTGCGCAATGCATGGATGTTGG
ATTAACGCGTGAGTCTCCTGTTTCGCGTGGCTTATGCTTTGTTCACGCAC
AGGAACAGGGAGCAGGAGGGGCGCAGGGACCTGGATTAGGACTGCCACAA
TGCGTCGACTGCGCACTGTGATACCGAGGAAAGCACATGCAAAGGGGCAC
CCATCGAGGACATTGGGGCATGGAGTACAGCTTGAAAACAGTGCTCGTTC
TTCGGCGGCTTCTGTTTTTGGTGTTCCTTTTACCCCGGTGCTTTCCATAT
CATCCATTCCCCTTGGAGGGGCTTTCAGCCGGCCCAGAAGCAACAGCAAC
AGCAGCAGCAGTAGCAGCAGCAGCAGTGATAGTAGCAGTAGCGACGATAG
CAGCCACAGCAGCAGCAGCAACAGCAGCAGGAATCTAGCACGTCGTCATC
ATAGTACCAAGACAAGCGCTCACGCGCAGGCAGTAGAAGAGGAGGGGGGG
GATGGCAGGGAGGGGGGAAAGAACATCGAGAAGGGCCGCCCTGGCACACG
CAGCGGTGTGCGACCAAAAGGAACCCCGTTCCGGCCCTCCCGCGGAGACA
ATGGCCGTGGCTGGTACGAGCTCTACAAGGAGGCCGGCCCCGAGGGATTC
AAGCGGTATCGTCCCCCGACCCCCTTCGATTGGTCCCCTCCTTCCACCGC
GACCCCCCCCTCCGAAGCTCCCCGACGGAGTAAGGTCTTCCTCGGGATCT
CGCTGGACAAGGAACCGCTGGGACGGATCGTCTTGGAGCTCGCTGATGAC
ATCCTGCCCCTGGCGGCGGAGAATTTCCGTCTCCTGTGCCAGGGGGCGGG
GAGGGAGGGAGGGAGGGAGGGAGGGAAGACGGGGCTTGGTTACGCCGGTT
CCAGGATCCATCGGGTCGTGAAAGGGGCCGGGATCGTGGGAGGTGACCTG
AGTACCGCCCGTGCCCCTCCCTCCTCGGGGGCGATCCGACCGCGACAACG
GCAGGGAGGGGCGGGGAACCACTCAGGCCTGGGCCCCCGCTTCTTCCCCG
ACGAATCTTTTCAGATTCCCCACACCGGTCCCGGTCTCCTCAGCATGGTC
TCCGCGGGCGCGCACCGGAACGGGTCCGTCTTCCACATCTCCACCCACGC
CTGCCCCCATCTGGACGGGCGGAGCGTGGTGTTTGGGCGGGTGGTGGGGG
GCGTGGAGGTGTTGGAGGCGGTAGCCAACACGTACACGATCAGGGGGCGG
CCGGTGGCAGTGGTGAGGGTGGAGGAGGCAGGCGTGATGGAGGCGGAGTG
AGGGGCAGGGAGGGGTGGGCGGGGAGATTGTAAAGAGGGGGATGGGAGGG
AAGGTAAGGATTTCCAAAGGCAAAGGGGGGGGGAGAGAACAAGGAGGGGA
GAGGGTATAAGTAGAATGCTGATGATGATGGCAGTGCGCGAGACAGAGGT
AATTCGTGGCCATGGCAGGGAAGGAACGATGAGATGAGAAGGACGGTGGA
GACTCAGGTTGCCGCCCGTCGGTCTGTTGCTTCTTTTACTCCATCATAAC
TATGAGGAGCGTCCTCGTTACAGCTTTGTTGAGTCATCCATGCA back to topprotein sequence of rna6303 >rna6303-protein ID=rna6303-protein|Name=rna6303|organism=Nannochloropsis gaditana|type=polypeptide|length=268bp
MPVGQARPLHPLTSPASSLPFSSPPGTPFRPSRGDNGRGWYELYKEAGPE
GFKRYRPPTPFDWSPPSTATPPSEAPRRSKVFLGISLDKEPLGRIVLELA
DDILPLAAENFRLLCQGAGREGGREGGKTGLGYAGSRIHRVVKGAGIVGG
DLSTARAPPSSGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLS
MVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIR
GRPVAVVRVEEAGVMEAE back to topmRNA from alignment at CM002468.1:206204..208070+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6303 ID=rna6303|Name=rna6303|organism=Nannochloropsis gaditana|type=mRNA|length=1867bp|location=Sequence derived from alignment at CM002468.1:206204..208070+ (Nannochloropsis gaditana)
CATGGATGTTGGATTAACGCGTGAGTCTCCTGTTTCGCGTGGCTTATGCT
TTGTTCACGCACAGGAacagggagcaggaggggcgcAGGGACCTGGATTA
GGACTGCCACAATGCGTCGACTGCGCACTGTGATACCGAGGAAAGCACAT
GCAAAGGGGCACCCATCGAGGACATTGGGGCATGGAGTACAGCTTGAAAA
CAGTGCTCGTTCTTCGGCGGCTTCTGTTTTTGGTGTTCCTTTTACCCCGG
TGCTTTCCATATCATCCATTCCCCTTGGAGGGGCTTTCAGCCGGCCCAga
agcaacagcaacagcagcagcagtagcagcagcagcagtgatAGTAGCAG
TAGCGACGATagcagccacagcagcagcagcaacagcagcaggaatCTAG
CACGTCGTCATCATAGTACCAAGACAAGCGCTCACGCGCAGGCagtagaa
gaggaggggggggatggcagggaggggggaaagaacaTCGAGAAGGGCCG
CCCTGGCACACGCAGCGGTGTGCGACCAAAAGGTAAATGCATGCATACTC
TTGAGGATTGGCGCGTATTCGAGACACGAAGGTTGAGATAGCCGGTggtg
agggaagaagagtgtAAAGAAGGCAGGTGGCACTCGGTTTATTCAGGGGG
GATGCAAGGAGAAAGTAGCTTCGCTCTCTGTTACATTTGGGTCGGCATAT
TTAGCAGGTGGTGCGATGAAGCAAGGGCAGACTATCAAAAAGTAGAGAAG
tgcatgggaaggaagagatgccTGTCGGCCAAGCCCGTCCACTCCACCCT
CTCAcctcgcccgcttcctccctccccttctcttccccaccAGGAACCCC
GTTCCGGCCCTCCCGCGGAGACAATGGCCGTGGCTGGTACGAGCTCTACA
AGGAGGCCGGCCCCGAGGGATTCAAGCGGTATCGTCCCCCGACCCCCTTC
GAttggtcccctccttccaccgcgacccccccctccgaAGCTCCCCGACG
GAGTAAGGTCTTCCTCGGGATCTCGCTGGACAAGGAACCGCTGGGACGGA
TCGTCTTGGAGCTCGCTGATGACATCCTGCCCCTGGCGGCGGAGAATTTC
CGTCTCCTGTgccagggggcggggagggagggagggagggagggagggaa
gacggggctTGGTTACGCCGGTTCCAGGATCCATCGGGTCGTGAAAGGGG
CCGGGATCGTGGGAGGTGACCTGAGTACCgcccgtgcccctccctcctcg
ggggCGATCCGACCGCGACaacggcagggaggggcggggaacCACTCAGG
CCTGGgcccccgcttcttccccgacgAATCTTTTCAGATTCCCCACACCG
GTCCCGGTCTCCTCAGCATGGTCTCCGCGGGCGCGCACCGGAACGGGTCC
GTCTTCCACATCTCCACCCACGCCTGCCCCCATCTGGACGGGCGGAGCGT
GGTGTTTGggcgggtggtggggggcgtggaggtgtTGGAGGCGGTAGCCA
ACACGTACACGATCAGGGGGCGGCCGGTGGCAGTggtgagggtggaggag
gcaggcgtgatggaggcggagtgaggggcagggaggggtgggcggggaga
ttgtaaagagggggatgggagggaaggtaagGATTTCCaaaggcaaaggg
ggggggagagaacaaggaggggagagggtaTAAGTAGAATGctgatgatg
atggcagTGCGCGAGACAGAGGTAATTCGTGGCcatggcagggaaggaac
gaTGAGATGAGAAGGACGGTGGAGACTCAGGTTGCCGCCCGTCGGTCTGT
TGCTTCTTTTACTCCATCATAACTATGAGGAGCGTCCTCGTTACAGCTTT
GTTGAGTCATCCATGCA back to topCoding sequence (CDS) from alignment at CM002468.1:206204..208070+ >rna6303 ID=rna6303|Name=rna6303|organism=Nannochloropsis gaditana|type=CDS|length=807bp|location=Sequence derived from alignment at CM002468.1:206204..208070+ (Nannochloropsis gaditana)
atgccTGTCGGCCAAGCCCGTCCACTCCACCCTCTCAcctcgcccgcttc
ctccctccccttctcttccccaccAGGAACCCCGTTCCGGCCCTCCCGCG
GAGACAATGGCCGTGGCTGGTACGAGCTCTACAAGGAGGCCGGCCCCGAG
GGATTCAAGCGGTATCGTCCCCCGACCCCCTTCGAttggtcccctccttc
caccgcgacccccccctccgaAGCTCCCCGACGGAGTAAGGTCTTCCTCG
GGATCTCGCTGGACAAGGAACCGCTGGGACGGATCGTCTTGGAGCTCGCT
GATGACATCCTGCCCCTGGCGGCGGAGAATTTCCGTCTCCTGTgccaggg
ggcggggagggagggagggagggagggagggaagacggggctTGGTTACG
CCGGTTCCAGGATCCATCGGGTCGTGAAAGGGGCCGGGATCGTGGGAGGT
GACCTGAGTACCgcccgtgcccctccctcctcgggggCGATCCGACCGCG
ACaacggcagggaggggcggggaacCACTCAGGCCTGGgcccccgcttct
tccccgacgAATCTTTTCAGATTCCCCACACCGGTCCCGGTCTCCTCAGC
ATGGTCTCCGCGGGCGCGCACCGGAACGGGTCCGTCTTCCACATCTCCAC
CCACGCCTGCCCCCATCTGGACGGGCGGAGCGTGGTGTTTGggcgggtgg
tggggggcgtggaggtgtTGGAGGCGGTAGCCAACACGTACACGATCAGG
GGGCGGCCGGTGGCAGTggtgagggtggaggaggcaggcgtgatggaggc
ggagtga back to top
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