EWM24386.1, cds6288 (CDS) Nannochloropsis gaditana

Overview
NameEWM24386.1
Unique Namecds6288
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:206971..207777 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24386.1
Productpeptidyl-prolyl cis-trans isomerase
Orig transcript idgnl|cribi|Naga_100508g3.5688.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:206971..207777 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0006457protein folding
GO:0000413protein peptidyl-prolyl isomerization
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003755peptidyl-prolyl cis-trans isomerase activity
Vocabulary: INTERPRO
TermDefinition
IPR024936Cyclophilin-type_PPIase
IPR029000Cyclophilin-like_dom
IPR002130Cyclophilin-type_PPIase_dom
Homology
BLAST of EWM24386.1 vs. NCBI_GenBank
Match: gi|585105786|gb|EWM24386.1| (peptidyl-prolyl cis-trans isomerase [Nannochloropsis gaditana])

HSP 1 Score: 532.332 bits (1370), Expect = 0.000e+0
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0
Query:    1 MPVGQARPLHPLTSPASSLPFSSPPGTPFRPSRGDNGRGWYELYKEAGPEGFKRYRPPTPFDWSPPSTATPPSEAPRRSKVFLGISLDKEPLGRIVLELADDILPLAAENFRLLCQGAGREGGREGGKTGLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAGVMEAE 268
            MPVGQARPLHPLTSPASSLPFSSPPGTPFRPSRGDNGRGWYELYKEAGPEGFKRYRPPTPFDWSPPSTATPPSEAPRRSKVFLGISLDKEPLGRIVLELADDILPLAAENFRLLCQGAGREGGREGGKTGLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAGVMEAE
Sbjct:    1 MPVGQARPLHPLTSPASSLPFSSPPGTPFRPSRGDNGRGWYELYKEAGPEGFKRYRPPTPFDWSPPSTATPPSEAPRRSKVFLGISLDKEPLGRIVLELADDILPLAAENFRLLCQGAGREGGREGGKTGLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAGVMEAE 268          
BLAST of EWM24386.1 vs. NCBI_GenBank
Match: gi|585105785|gb|EWM24385.1| (peptidyl-prolyl cis-trans isomerase [Nannochloropsis gaditana])

HSP 1 Score: 495.352 bits (1274), Expect = 3.322e-174
Identity = 244/245 (99.59%), Postives = 244/245 (99.59%), Query Frame = 0
Query:   24 PPGTPFRPSRGDNGRGWYELYKEAGPEGFKRYRPPTPFDWSPPSTATPPSEAPRRSKVFLGISLDKEPLGRIVLELADDILPLAAENFRLLCQGAGREGGREGGKTGLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAGVMEAE 268
            P GTPFRPSRGDNGRGWYELYKEAGPEGFKRYRPPTPFDWSPPSTATPPSEAPRRSKVFLGISLDKEPLGRIVLELADDILPLAAENFRLLCQGAGREGGREGGKTGLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAGVMEAE
Sbjct:  161 PKGTPFRPSRGDNGRGWYELYKEAGPEGFKRYRPPTPFDWSPPSTATPPSEAPRRSKVFLGISLDKEPLGRIVLELADDILPLAAENFRLLCQGAGREGGREGGKTGLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAGVMEAE 405          
BLAST of EWM24386.1 vs. NCBI_GenBank
Match: gi|298712262|emb|CBJ26713.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 191.43 bits (485), Expect = 2.169e-56
Identity = 112/277 (40.43%), Postives = 146/277 (52.71%), Query Frame = 0
Query:   32 SRGDNGRGWYELYKEAGPEGFKRYRPPTPFDWSPP-STATPPSEAPRRSK-----------VFLGISLDKEPLGRIVLELADDILPLAAENFRLLCQGAG-----------REGGREGG---------------------KTGLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGL-GPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAG 263
            +R   GRGWY+ Y+  GP+ F++ R P PFDW  P +   P + A  R +            F  +S+D  P GR+  ELA D+LP+ +ENF  LC G             R   + GG                     +  LGY GS IHRVV G GI+GGD+               +  GG  +HS   G RFFPDE+F IPHT PGLL+M ++G H NGS F+I+T A  HLDGRSV FGRV  G+EV+ AV   Y+IRG+PV+ + +EE G
Sbjct:   21 TRASTGRGWYQRYQRMGPDAFRKARAPNPFDWDTPLAPPAPEAGAEERQQGGSGRRRPRRRAFFAMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASAAGEATLLRRQEQAGGGAAVEEEAVEEKEEEEEKEEEEEELGYKGSVIHRVVTGTGIMGGDV---------------EGYGGKRSHSAFSGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEECG 282          
BLAST of EWM24386.1 vs. NCBI_GenBank
Match: gi|761931552|gb|KIY52500.1| (hypothetical protein FISHEDRAFT_55992 [Fistulina hepatica ATCC 64428])

HSP 1 Score: 135.961 bits (341), Expect = 3.866e-36
Identity = 79/188 (42.02%), Postives = 106/188 (56.38%), Query Frame = 0
Query:   79 SKVFLGISLDKEPLGRIVLELADDILPLAAENFRLLCQGAGREGGREGGKTGLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAGVME 266
            S VF  ++++  P GRIV +L DD++P  A NFR LC G          + G GYAGS  HRV+    + GGD +               R  G G  S  G +F PDE+F+IPH+ PGLLSM +AGA+ NGS F I+T     L+GR VVFG VV G++V++A+ N  T  GRP + V V   G ++
Sbjct:    9 SNVFFEVAINSNPAGRIVFKLYDDVVPRTARNFRELCTG----------QHGFGYAGSTFHRVIPQFMLQGGDFT---------------RHNGTGGKSIYGEKF-PDENFEIPHSKPGLLSMANAGANTNGSQFFITTVVTSWLNGRHVVFGEVVEGMDVVKAIENEGTPGGRPNSKVTVTSCGEVQ 170          
BLAST of EWM24386.1 vs. NCBI_GenBank
Match: gi|169867062|ref|XP_001840112.1| (peptidyl-prolyl cis-trans isomerase B [Coprinopsis cinerea okayama7#130] >gi|116498664|gb|EAU81559.1| peptidyl-prolyl cis-trans isomerase B [Coprinopsis cinerea okayama7#130])

HSP 1 Score: 140.584 bits (353), Expect = 4.778e-36
Identity = 82/203 (40.39%), Postives = 113/203 (55.67%), Query Frame = 0
Query:   67 STATPPSEAPR---RSKVFLGISLDKEPLGRIVLELADDILPLAAENFRLLCQGAGREGGREGGKTGLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAGVME 266
            +T T P+ APR   R+ V+  I+++ EP GRIV +L DD++P  A+NFR L  G          + G GYAGS  HR++    I GGD +                  G G  S  GPRF PDE+F + H+ PGLLSM +AG + NGS F I+T   P LDGR  VFG VV G+E+++ + +  +  GRP   V + E GV++
Sbjct:  167 ATETAPAPAPRDLSRANVYFNIAINNEPKGRIVFKLFDDLVPKTAKNFRELATG----------EHGFGYAGSGFHRIIPNFMIQGGDFT---------------NHNGTGGKSIYGPRF-PDENFALKHSKPGLLSMANAGPNTNGSQFFITTVVTPWLDGRHTVFGEVVEGMELVKEIESVGSGSGRPSKKVTISECGVLD 343          
BLAST of EWM24386.1 vs. NCBI_GenBank
Match: gi|954192867|gb|KRX05618.1| (Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain [Pseudocohnilembus persalinus])

HSP 1 Score: 135.576 bits (340), Expect = 7.171e-36
Identity = 77/189 (40.74%), Postives = 105/189 (55.56%), Query Frame = 0
Query:   75 APRRSKVFLGISLDKEPLGRIVLELADDILPLAAENFRLLCQGAGREGGREGGKTGLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAG 263
            + +  KVF  +++  +P GRIV EL  D++P  AENFR LC G     G++ G   L Y GS  HR++    + GGD +                Q G G +S  G R FPDE+F + H  PGLLSM + G + NGS F I+T  CP LDG+  VFG+VV G+EVL AV +  T  G P + V +++ G
Sbjct:   13 SKKNPKVFFDVAIGSQPKGRIVFELFSDVVPKTAENFRSLCVG-----GQKAGNYDLHYKGSPFHRIIPSFMVQGGDFTN---------------QNGTGGYSIYG-REFPDENFNVKHDRPGLLSMANRGPNTNGSQFFITTVECPWLDGKHTVFGKVVEGMEVLNAVESQGTRSGTPKSKVTIQDCG 180          
BLAST of EWM24386.1 vs. NCBI_GenBank
Match: gi|303321646|ref|XP_003070817.1| (peptidyl-prolyl cis-trans isomerase H, putative [Coccidioides posadasii C735 delta SOWgp] >gi|240110514|gb|EER28672.1| peptidyl-prolyl cis-trans isomerase H, putative [Coccidioides posadasii C735 delta SOWgp] >gi|320040300|gb|EFW22233.1| peptidyl-prolyl cis-trans isomerase [Coccidioides posadasii str. Silveira] >gi|855528692|gb|KMM64227.1| peptidyl-prolyl cis-trans isomerase H [Coccidioides posadasii RMSCC 3488])

HSP 1 Score: 135.191 bits (339), Expect = 9.451e-36
Identity = 81/200 (40.50%), Postives = 106/200 (53.00%), Query Frame = 0
Query:   67 STATPPSEAPRRSKVFLGISLDKEPLGRIVLELADDILPLAAENFRLLCQGAGREG-GREGGKTGLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAGVM 265
            +TATPP   P    VF  +SL  EPLGRI +EL  ++ P  AENFR  C G  ++  GR  G     Y GS+ HRV+K   I GGD                    G G     G   FPDE+F + H  PGLLSM ++G + NG  F I+T A P L+ + VVFGRV+ G+E+++ V NT T R +P   V + + G M
Sbjct:    5 ATATPPQNGPN-PIVFFDLSLGGEPLGRIKMELFANVTPRTAENFRQFCTGESKDARGRPQG-----YKGSKFHRVIKDFMIQGGDFLNG---------------DGTGRICIYGTATFPDENFNLTHDRPGLLSMANSGPNTNGCQFFITTVATPFLNNKHVVFGRVIEGMEIVKMVENTRTTRDKPNQDVVIAQCGEM 183          
BLAST of EWM24386.1 vs. NCBI_GenBank
Match: gi|661185652|emb|CDH52296.1| (cpr1p [Lichtheimia corymbifera JMRC:FSU:9682])

HSP 1 Score: 134.42 bits (337), Expect = 9.922e-36
Identity = 74/186 (39.78%), Postives = 104/186 (55.91%), Query Frame = 0
Query:   80 KVFLGISLDKEPLGRIVLELADDILPLAAENFRLLCQGAGREGGREGGKTGLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAGVM 265
            KV+  +S+DK+PLGRI + L +D++P  A+NFR LC G          + G GY GS  HRV+    + GGD +                  G G  S  G +F PDE+FQ+ HT PG LSM +AG + NGS F I+T  CP LDG+ VVFG VV G+ V+  +    +  G+P   ++VE++G +
Sbjct:    5 KVYFDVSVDKQPLGRITMVLFNDVVPNTADNFRALCTG----------EKGFGYQGSIFHRVIPQFMLQGGDFTNFN---------------GTGGKSIYGEKF-PDENFQLKHTKPGQLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGMNVVSEIEKLGSASGKPKKEIKVEKSGQL 164          
BLAST of EWM24386.1 vs. NCBI_GenBank
Match: gi|752280037|dbj|GAM85333.1| (hypothetical protein ANO11243_033400 [fungal sp. No.11243])

HSP 1 Score: 134.806 bits (338), Expect = 1.643e-35
Identity = 87/210 (41.43%), Postives = 108/210 (51.43%), Query Frame = 0
Query:   65 PPSTATPPS-EAPRRSKVFLGISLDKEPLGRIVLELADDILPLAAENFRLLCQGAGREGGREGGKTGLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVV------GGVEVLEAVANTYTIRG--RPVAVVRVEEAGVM 265
            PPS    P   +P    VF  ISL  EPLGRI +EL  D++P  AENFR LC G   E GR      +GY GSR+HRV+ G  I GGD                    G G+    G R F DE+F++ H GPGLLSM ++G   NG  F I+T A PHLDG+ VVFGRV+        ++V+  + N    +   RPV  V V   G M
Sbjct:    7 PPSAPLHPDLTSPTNPVVFFDISLANEPLGRIKMELFADVVPRTAENFRQLCTGEYVERGR-----AVGYKGSRVHRVIPGFMIQGGDFING---------------DGTGSTCIYGTRKFADENFRVRHNGPGLLSMANSGPDTNGCQFFITTAATPHLDGKHVVFGRVLPDDKNSKSMDVVRKIENVRVTKNNDRPVMDVTVALCGEM 196          
BLAST of EWM24386.1 vs. NCBI_GenBank
Match: gi|119195811|ref|XP_001248509.1| (peptidyl-prolyl cis-trans isomerase H [Coccidioides immitis RS] >gi|767014492|gb|EAS36926.3| peptidyl-prolyl cis-trans isomerase H [Coccidioides immitis RS] >gi|859416995|gb|KMP09837.1| peptidyl-prolyl cis-trans isomerase [Coccidioides immitis RMSCC 2394] >gi|875287645|gb|KMU81274.1| peptidyl-prolyl cis-trans isomerase H [Coccidioides immitis RMSCC 3703] >gi|875646669|gb|KMU89357.1| peptidyl-prolyl cis-trans isomerase [Coccidioides immitis H538.4])

HSP 1 Score: 134.42 bits (337), Expect = 1.652e-35
Identity = 80/200 (40.00%), Postives = 106/200 (53.00%), Query Frame = 0
Query:   67 STATPPSEAPRRSKVFLGISLDKEPLGRIVLELADDILPLAAENFRLLCQGAGREG-GREGGKTGLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAGVM 265
            +TATPP   P    VF  +SL  EPLGR+ +EL  ++ P  AENFR  C G  ++  GR  G     Y GS+ HRV+K   I GGD                    G G     G   FPDE+F + H  PGLLSM ++G + NG  F I+T A P L+ + VVFGRV+ G+E+++ V NT T R +P   V + + G M
Sbjct:    5 ATATPPQNGPN-PIVFFDLSLGGEPLGRVKMELFANVTPRTAENFRQFCTGESKDARGRPQG-----YKGSKFHRVIKDFMIQGGDFLNG---------------DGTGRICIYGTATFPDENFNLTHDRPGLLSMANSGPNTNGCQFFITTVATPFLNNKHVVFGRVIEGMEIVKMVENTRTTRDKPNQDVVIAQCGEM 183          
The following BLAST results are available for this feature:
BLAST of EWM24386.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105786|gb|EWM24386.1|0.000e+0100.00peptidyl-prolyl cis-trans isomerase [Nannochlorops... [more]
gi|585105785|gb|EWM24385.1|3.322e-17499.59peptidyl-prolyl cis-trans isomerase [Nannochlorops... [more]
gi|298712262|emb|CBJ26713.1|2.169e-5640.43conserved unknown protein [Ectocarpus siliculosus][more]
gi|761931552|gb|KIY52500.1|3.866e-3642.02hypothetical protein FISHEDRAFT_55992 [Fistulina h... [more]
gi|169867062|ref|XP_001840112.1|4.778e-3640.39peptidyl-prolyl cis-trans isomerase B [Coprinopsis... [more]
gi|954192867|gb|KRX05618.1|7.171e-3640.74Cyclophilin-like peptidyl-prolyl cis-trans isomera... [more]
gi|303321646|ref|XP_003070817.1|9.451e-3640.50peptidyl-prolyl cis-trans isomerase H, putative [C... [more]
gi|661185652|emb|CDH52296.1|9.922e-3639.78cpr1p [Lichtheimia corymbifera JMRC:FSU:9682][more]
gi|752280037|dbj|GAM85333.1|1.643e-3541.43hypothetical protein ANO11243_033400 [fungal sp. N... [more]
gi|119195811|ref|XP_001248509.1|1.652e-3540.00peptidyl-prolyl cis-trans isomerase H [Coccidioide... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6303rna6303Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications