rna6299, rna6299 (mRNA) Nannochloropsis gaditana

Overview
Namerna6299
Unique Namerna6299
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length528
Alignment locationCM002468.1:201139..201520 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103880g1.881.mrna
Orig protein idgnl|cribi|Naga_103880g1.881
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:201139..201520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103880g1gene6091Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6299rna6299-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24389.1cds6284Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6299 ID=rna6299|Name=rna6299|organism=Nannochloropsis gaditana|type=mRNA|length=528bp
ATGAAGGACTCATCCGACATAGTCTACGATGATTCTTCGCTACTTACCTG
CCGAAGTCCGGAGTTAAAACGCCGGCTTCATCGACGAACCAGCAAAGCAT
CCCAAGAGAGCTTGAAGCTCCTTCGCATTATTTTCCCCCTTCTTGTCGCA
CCTTTGTGCATCACGTCCTTCATCTTCACCTGTTTGTATGCTCATATTTA
TGCCCGGGAAGGATCGTACGGCCCTGAAGATTGGCCCAAATGCCTGACCG
TGCCCAACATAGGTAATCTTCATCTGGACAACAATCGCTTCTGCACCTCT
GCCTCCAATTTCGCCGGGCAAGCCTACCTCTCCCTCCTCGTTGCCGCGGG
GGGGTTGCAACTAGGCCTACGGGACAACGATTATTTGCTCTTCTCTTCCT
TCACATGCATCGTGGGGCTCCTCGGCATTACCATTTATAGAGAGAGCTAC
CCCTACTTCCTTGACCCCCACTTCATGAGCACCACCCTCTTCACCCTCTC
CAAGTACATCCACCCCCGCATTGTGTAA
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protein sequence of rna6299

>rna6299-protein ID=rna6299-protein|Name=rna6299|organism=Nannochloropsis gaditana|type=polypeptide|length=122bp
PFLPPSPFLPISKTPLPSRSLSYILNPAQPSPPSSPSSLPPSLPPSPLPP
SLPPVQLGFPGPSVWHARPSPPPLPPLPLRLPFPPPTGPTPSAATWEGGS
SAFLLHCPARNARHARQQGEGG
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mRNA from alignment at CM002468.1:201139..201520+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6299 ID=rna6299|Name=rna6299|organism=Nannochloropsis gaditana|type=mRNA|length=382bp|location=Sequence derived from alignment at CM002468.1:201139..201520+ (Nannochloropsis gaditana)
cccttcctccctccctccccatttcTCCCAATCTCTAAgactcctcttcc
ctctcgttCCTTGTCGTACATCCTGAACCCGGCTCaaccttcgcctccct
cctccccttcctccctccctccctccctccctccctcccccctccccccc
tccctccccccagtTCAACTTGGCTTTCCTGGGCCTTCAGTATGGCATGC
TCGCCCtagccctcctcctcttcctcctctgcctctacgcctcccttttc
cgcCCCCAACGGGCCCGACCCCGAGTGCGGCTacttgggagggagggtct
agtgcttttctcctccactgccctgCTCGGAATGCTCGTCATGCTCGTca
gcaaggagagggtggcTGAGCTCGCCAtccag
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Coding sequence (CDS) from alignment at CM002468.1:201139..201520+

>rna6299 ID=rna6299|Name=rna6299|organism=Nannochloropsis gaditana|type=CDS|length=369bp|location=Sequence derived from alignment at CM002468.1:201139..201520+ (Nannochloropsis gaditana)
cccttcctccctccctccccatttcTCCCAATCTCTAAgactcctcttcc
ctctcgttCCTTGTCGTACATCCTGAACCCGGCTCaaccttcgcctccct
cctccccttcctccctccctccctccctccctccctcccccctccccccc
tccctccccccagtTCAACTTGGCTTTCCTGGGCCTTCAGTATGGCATGC
TCGCCCtagccctcctcctcttcctcctctgcctctacgcctcccttttc
cgcCCCCAACGGGCCCGACCCCGAGTGCGGCTacttgggagggagggtct
agtgcttttctcctccactgccctgCTCGGAATGCTCGTCATGCTCGTca
gcaaggagagggtggcTGA
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Synonyms
Publications