rna6298, rna6298 (mRNA) Nannochloropsis gaditana

Overview
Namerna6298
Unique Namerna6298
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length691
Alignment locationCM002468.1:199771..200992 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100283g1.8479.mrna
Orig protein idgnl|cribi|Naga_100283g1.8479
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:199771..200992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100283g1gene6090Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6298rna6298-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24397.1cds6283Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6298 ID=rna6298|Name=rna6298|organism=Nannochloropsis gaditana|type=mRNA|length=691bp
ATGCAAAGAAAAATACGATCGGCTGGGTTCATCATTTGCATTTTCGTCAG
AGGGCCGGAAGAACAGTCTAGTGGTATATTTAGACGTTTTCTTCGACTTG
ACTCCAAGAAAGACCTAACTCTTGACACCCTCTTTCATACCATCCAAATT
CAAGAAGCATTCCAGATACACCAAAAAAATCAAACATGTTCCGTGCCGCC
CTCTTCAAAGCCTCTCGCTCTATGCCTATGGCTAGCAATCATGCCCGGCA
CATTGTCCATCGGCATGCCTCTACCGGTCGCTCTGCCTGGCTCCGGGACC
CTGCAGTGTATCCTCTGCTTGGCATTATTGGCAGCGCAATGGTCCTGTGC
TCTACCTTCATGGTTCACTTCACCACCTCCTCTCCTGATGTTCGTATCAA
CAAGACAAAGCGTCAGAGCGTCGTGCGGGTGGATTAGAGCTGTAAAATCT
TGGAAACCGTTACCCCAGGGAAAACATTTTGCTGGTATGTGGTAAAGGGT
CAACTATTTCAAAACCGAACCTGGGGTGACTAAAAAGAAGAAAAGAATAA
AATTGGACAGAAGCGTCAATGGGAGAGAAGCATGACGAGAAGAGATCCTC
TCCCAGTTGACACTGTAAGCAGGAATTGACAGATTTTAAGAAGAAAAAAA
TGTGGTGATAACAAATTAAGCAGAAATCAAATACGTCGCGA
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protein sequence of rna6298

>rna6298-protein ID=rna6298-protein|Name=rna6298|organism=Nannochloropsis gaditana|type=polypeptide|length=175bp
MKDSSDIVYDDSSLLTCRSPELKRRLHRRTSKASQESLKLLRIIFPLLVA
PLCITSFIFTCLYAHIYAREGSYGPEDWPKCLTVPNIGNLHLDNNRFCTS
ASNFAGQAYLSLLVAAGGLQLGLRDNDYLLFSSFTCIVGLLGITIYRESY
PYFLDPHFMSTTLFTLSKYIHPRIV
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mRNA from alignment at CM002468.1:199771..200992+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6298 ID=rna6298|Name=rna6298|organism=Nannochloropsis gaditana|type=mRNA|length=1222bp|location=Sequence derived from alignment at CM002468.1:199771..200992+ (Nannochloropsis gaditana)
ATGAAGGACTCATCCGACATAGTCTACGATGATTCTTCGCTACTTACCTG
CCGAAGTCCGGAGTTAAAACGCCGGCTTCATCGACGAACCAGCAAAGCAT
CCCAAGAGAGCTTGAAGGTACACTCAAGCTCTTGTAGCTACGGGCGGGCA
AGCTGTATCTGGAGGAGCGGCAACAAGCCCGTTAGGAAACTGAGTCTCTT
ATGATTGAAATGTTTATTAACTTACTCTGTTGTATTTTTACATACACCCT
GGCGCCCCACGGACAGCTCCTTCGCAttattttcccccttcttgtcGCAC
CTTTGTGCATCACGTCCTTCATCTTCACCTGTTTGTATGCTCATATTTAT
GCCCGGGAAGGATCGTACGGCCCTGAAGATTGGCCCAAATGCCTGACCGT
GCCCAACATAGGTAGGTGCGAGTGTTGCCATTCGGAGCAAGATAGGTCCA
TACCAcaccctctctctttttgtcGGGCGGAGCACTGAACTCCGTGACAG
AGTTTTTACTCTTgatgaaaggaagaaaagtcCAGTTCAAGATCATCATT
AAAGAAAGGGAGCTCTTCGACATGAAAGTGCGGATATTTAACACcgtctc
tcttcctcctctcccgctgattttctcttcccttccttcttcctccctcc
ctcccacgcttcctcccttcacaCAAGGTAATCTTCATCTGGACAACAAT
CGCTTCTGCACCTCTGCCTCCAATTTCGCCGGGCAAgcctacctctccct
cctcgttgcCGCGGGGGGGTTGCAACTAGGCCTACGGGACAACGATTATT
tgctcttctcttccttcacaTGCATCGTGGGGCTCCTCGGCATTACCATT
TATAGAGAGAGCTACCCGTACGTAGGCTTCCAGAGGCTttgtcccccctt
ccttcctccctctaaactccctctcttccttcctctgcgcTCGGTTccca
gcccttccttcctcctttcgccctcgtttatccctccctcccttcctccc
tccccatgagCAGTCCTACCTGCTCCATTGCCACCCACTGACACGATAca
ttcttcttccctccctccctccctctagcTACTTCCTTGACCCCCACTTC
ATGAGCACCAccctcttcaccctctccAAGTACATCCACCCCCGCATGTA
CGACGACCTGTCCGCCTCAGCCCATCTCCCGCCGGAGCTAAAAGGgctca
tcccttcctcccaagtGTGTAA
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Coding sequence (CDS) from alignment at CM002468.1:199771..200992+

>rna6298 ID=rna6298|Name=rna6298|organism=Nannochloropsis gaditana|type=CDS|length=2640bp|location=Sequence derived from alignment at CM002468.1:199771..200992+ (Nannochloropsis gaditana)
ATGAAGGACTCATCCGACATAGTCTACGATGATTCTTCGCTACTTACCTG
CCGAAGTCCGGAGTTAAAACGCCGGCTTCATCGACGAACCAGCAAAGCAT
CCCAAGAGAGCTTGAAGCTCCTTCGCAttattttcccccttcttgtcGCA
CCTTTGTGCATCACGTCCTTCATCTTCACCTGTTTGTATGCTCATATTTA
TGCCCGGGAAGGATCGTACGGCCCTGAAGATTGGCCCAAATGCCTGACCG
TGCCCAACATAGGTAATCTTCATCTGGACAACAATCGCTTCTGCACCTCT
GCCTCCAATTTCGCCGGGCAAgcctacctctccctcctcgttgcCGCGGG
GGGGTTGCAACTAGGCCTACGGGACAACGATTATTtgctcttctcttcct
tcacaTGCATCGTGGGGCTCCTCGGCATTACCATTTATAGAGAGAGCTAC
CCcTACTTCCTTGACCCCCACTTCATGAGCACCAccctcttcaccctctc
cAAGTACATCCACCCCCGCATtGTGTAAATGAAGGACTCATCCGACATAG
TCTACGATGATTCTTCGCTACTTACCTGCCGAAGTCCGGAGTTAAAACGC
CGGCTTCATCGACGAACCAGCAAAGCATCCCAAGAGAGCTTGAAGCTCCT
TCGCAttattttcccccttcttgtcGCACCTTTGTGCATCACGTCCTTCA
TCTTCACCTGTTTGTATGCTCATATTTATGCCCGGGAAGGATCGTACGGC
CCTGAAGATTGGCCCAAATGCCTGACCGTGCCCAACATAGGTAATCTTCA
TCTGGACAACAATCGCTTCTGCACCTCTGCCTCCAATTTCGCCGGGCAAg
cctacctctccctcctcgttgcCGCGGGGGGGTTGCAACTAGGCCTACGG
GACAACGATTATTtgctcttctcttccttcacaTGCATCGTGGGGCTCCT
CGGCATTACCATTTATAGAGAGAGCTACCCcTACTTCCTTGACCCCCACT
TCATGAGCACCAccctcttcaccctctccAAGTACATCCACCCCCGCATt
GTGTAAATGAAGGACTCATCCGACATAGTCTACGATGATTCTTCGCTACT
TACCTGCCGAAGTCCGGAGTTAAAACGCCGGCTTCATCGACGAACCAGCA
AAGCATCCCAAGAGAGCTTGAAGCTCCTTCGCAttattttcccccttctt
gtcGCACCTTTGTGCATCACGTCCTTCATCTTCACCTGTTTGTATGCTCA
TATTTATGCCCGGGAAGGATCGTACGGCCCTGAAGATTGGCCCAAATGCC
TGACCGTGCCCAACATAGGTAATCTTCATCTGGACAACAATCGCTTCTGC
ACCTCTGCCTCCAATTTCGCCGGGCAAgcctacctctccctcctcgttgc
CGCGGGGGGGTTGCAACTAGGCCTACGGGACAACGATTATTtgctcttct
cttccttcacaTGCATCGTGGGGCTCCTCGGCATTACCATTTATAGAGAG
AGCTACCCcTACTTCCTTGACCCCCACTTCATGAGCACCAccctcttcac
cctctccAAGTACATCCACCCCCGCATtGTGTAAATGAAGGACTCATCCG
ACATAGTCTACGATGATTCTTCGCTACTTACCTGCCGAAGTCCGGAGTTA
AAACGCCGGCTTCATCGACGAACCAGCAAAGCATCCCAAGAGAGCTTGAA
GCTCCTTCGCAttattttcccccttcttgtcGCACCTTTGTGCATCACGT
CCTTCATCTTCACCTGTTTGTATGCTCATATTTATGCCCGGGAAGGATCG
TACGGCCCTGAAGATTGGCCCAAATGCCTGACCGTGCCCAACATAGGTAA
TCTTCATCTGGACAACAATCGCTTCTGCACCTCTGCCTCCAATTTCGCCG
GGCAAgcctacctctccctcctcgttgcCGCGGGGGGGTTGCAACTAGGC
CTACGGGACAACGATTATTtgctcttctcttccttcacaTGCATCGTGGG
GCTCCTCGGCATTACCATTTATAGAGAGAGCTACCCcTACTTCCTTGACC
CCCACTTCATGAGCACCAccctcttcaccctctccAAGTACATCCACCCC
CGCATtGTGTAAATGAAGGACTCATCCGACATAGTCTACGATGATTCTTC
GCTACTTACCTGCCGAAGTCCGGAGTTAAAACGCCGGCTTCATCGACGAA
CCAGCAAAGCATCCCAAGAGAGCTTGAAGCTCCTTCGCAttattttcccc
cttcttgtcGCACCTTTGTGCATCACGTCCTTCATCTTCACCTGTTTGTA
TGCTCATATTTATGCCCGGGAAGGATCGTACGGCCCTGAAGATTGGCCCA
AATGCCTGACCGTGCCCAACATAGGTAATCTTCATCTGGACAACAATCGC
TTCTGCACCTCTGCCTCCAATTTCGCCGGGCAAgcctacctctccctcct
cgttgcCGCGGGGGGGTTGCAACTAGGCCTACGGGACAACGATTATTtgc
tcttctcttccttcacaTGCATCGTGGGGCTCCTCGGCATTACCATTTAT
AGAGAGAGCTACCCcTACTTCCTTGACCCCCACTTCATGAGCACCAccct
cttcaccctctccAAGTACATCCACCCCCGCATtGTGTAA
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Synonyms
Publications