EWM24397.1, cds6283 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24397.1 vs. NCBI_GenBank
Match: gi|585105799|gb|EWM24397.1| (hypothetical protein Naga_100283g1 [Nannochloropsis gaditana]) HSP 1 Score: 359.377 bits (921), Expect = 1.004e-125 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0 Query: 1 MKDSSDIVYDDSSLLTCRSPELKRRLHRRTSKASQESLKLLRIIFPLLVAPLCITSFIFTCLYAHIYAREGSYGPEDWPKCLTVPNIGNLHLDNNRFCTSASNFAGQAYLSLLVAAGGLQLGLRDNDYLLFSSFTCIVGLLGITIYRESYPYFLDPHFMSTTLFTLSKYIHPRIV 175 MKDSSDIVYDDSSLLTCRSPELKRRLHRRTSKASQESLKLLRIIFPLLVAPLCITSFIFTCLYAHIYAREGSYGPEDWPKCLTVPNIGNLHLDNNRFCTSASNFAGQAYLSLLVAAGGLQLGLRDNDYLLFSSFTCIVGLLGITIYRESYPYFLDPHFMSTTLFTLSKYIHPRIV Sbjct: 1 MKDSSDIVYDDSSLLTCRSPELKRRLHRRTSKASQESLKLLRIIFPLLVAPLCITSFIFTCLYAHIYAREGSYGPEDWPKCLTVPNIGNLHLDNNRFCTSASNFAGQAYLSLLVAAGGLQLGLRDNDYLLFSSFTCIVGLLGITIYRESYPYFLDPHFMSTTLFTLSKYIHPRIV 175
BLAST of EWM24397.1 vs. NCBI_GenBank
Match: gi|585109123|gb|EWM26963.1| (hypothetical protein Naga_101509g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 106.686 bits (265), Expect = 5.626e-25 Identity = 58/155 (37.42%), Postives = 88/155 (56.77%), Query Frame = 0 Query: 21 ELKRRLHRRTSKASQESLKLLRIIFPLLVAPLCITSFIFTCLYAHIYAREGSYGPEDWPKCLTVPNIGNLHL-DNNRFCTSASNFAGQAYLSLLVAAGGLQLGLRDNDYLLFSSFTCIVGLLGITIYRESYPYFLDPHFMSTTLFTLSKYIHPRI 174 +L R + ++++ L+I+ L+ P + S I +YA I R+ Y EDW +CL PN G + D F SA+ FA +A + L+++ G+ GL D+D L ++ F GLLG+T+YRES P +P MS TL TL+K+IHPR+ Sbjct: 4 QLNRWGGVHNEEVDRKAIFALKILL-LVAIPTVMASTILATVYAWIQGRQYGYTVEDWQRCLVSPNKGGFGVGDQTLFTGSAATFAMKAVVFLILSFNGVNAGLIDHDMLPYALFVSFSGLLGMTVYRESSPIQPEPRVMSATLVTLTKFIHPRM 157
BLAST of EWM24397.1 vs. NCBI_GenBank
Match: gi|585108060|gb|EWM26072.1| (hypothetical protein Naga_100278g4 [Nannochloropsis gaditana]) HSP 1 Score: 107.842 bits (268), Expect = 2.372e-24 Identity = 56/156 (35.90%), Postives = 89/156 (57.05%), Query Frame = 0 Query: 24 RRLHRRTSKASQESLKLLRIIFPLLVAPLCITSFIFTCLYAHIYAREGSYGPEDWPKCLTVPN-----IGNLHLDNNRFCTSASNFAGQAYLSLLVAAGGLQLGLRDNDYLLFSSFTCIVGLLGITIYRESYPYFLDPHFMSTTLFTLSKYIHPRI 174 +RL RR + SL LRI+F + + PL I + F C+YA I+A + SY +DW +CL PN +G D + +A+++AG+ ++ ++V +G++D D L +S F ++ +LGI +YRE+ P P +S TL TL KYI P + Sbjct: 48 QRLARRYFQIQDRSLTALRILFVVGI-PLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNM 202
BLAST of EWM24397.1 vs. NCBI_GenBank
Match: gi|553182461|ref|XP_005853731.1| (hypothetical protein NGA_0163502 [Nannochloropsis gaditana CCMP526] >gi|553186167|ref|XP_005854371.1| hypothetical protein NGA_0163501 [Nannochloropsis gaditana CCMP526] >gi|422294686|gb|EKU21986.1| hypothetical protein NGA_0163501 [Nannochloropsis gaditana CCMP526] >gi|422295328|gb|EKU22627.1| hypothetical protein NGA_0163502 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 106.686 bits (265), Expect = 3.091e-24 Identity = 56/164 (34.15%), Postives = 92/164 (56.10%), Query Frame = 0 Query: 16 TCRSPELKRRLHRRTSKASQESLKLLRIIFPLLVAPLCITSFIFTCLYAHIYAREGSYGPEDWPKCLTVPN-----IGNLHLDNNRFCTSASNFAGQAYLSLLVAAGGLQLGLRDNDYLLFSSFTCIVGLLGITIYRESYPYFLDPHFMSTTLFTLSKYIHPRI 174 + + + +RL RR + SL LRI+F ++ PL I + F C+YA I+A + SY +DW +CL PN +G D + +A+++AG+ ++ ++V +G++D D L +S F ++ +LGI +YRE+ P P +S TL TL KYI P + Sbjct: 40 SSKQTKEDQRLARRYFQIQDRSLTALRILF-VVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANMMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNM 202
BLAST of EWM24397.1 vs. NCBI_GenBank
Match: gi|585108059|gb|EWM26071.1| (hypothetical protein Naga_100278g4 [Nannochloropsis gaditana]) HSP 1 Score: 107.071 bits (266), Expect = 7.182e-24 Identity = 56/164 (34.15%), Postives = 92/164 (56.10%), Query Frame = 0 Query: 16 TCRSPELKRRLHRRTSKASQESLKLLRIIFPLLVAPLCITSFIFTCLYAHIYAREGSYGPEDWPKCLTVPN-----IGNLHLDNNRFCTSASNFAGQAYLSLLVAAGGLQLGLRDNDYLLFSSFTCIVGLLGITIYRESYPYFLDPHFMSTTLFTLSKYIHPRI 174 + + + +RL RR + SL LRI+F + + PL I + F C+YA I+A + SY +DW +CL PN +G D + +A+++AG+ ++ ++V +G++D D L +S F ++ +LGI +YRE+ P P +S TL TL KYI P + Sbjct: 40 SSKQTKEDQRLARRYFQIQDRSLTALRILFVVGI-PLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNM 202 The following BLAST results are available for this feature:
BLAST of EWM24397.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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