EWM24397.1, cds6283 (CDS) Nannochloropsis gaditana

Overview
NameEWM24397.1
Unique Namecds6283
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:199771..199887 +
Alignment locationCM002468.1:200037..200181 +
Alignment locationCM002468.1:200448..200637 +
Alignment locationCM002468.1:200849..200917 +
Alignment locationCM002468.1:200986..200992 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24397.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100283g1.8479.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:199771..199887 +
CM002468.1supercontigCM002468.1:200037..200181 +
CM002468.1supercontigCM002468.1:200448..200637 +
CM002468.1supercontigCM002468.1:200849..200917 +
CM002468.1supercontigCM002468.1:200986..200992 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM24397.1 vs. NCBI_GenBank
Match: gi|585105799|gb|EWM24397.1| (hypothetical protein Naga_100283g1 [Nannochloropsis gaditana])

HSP 1 Score: 359.377 bits (921), Expect = 1.004e-125
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
Query:    1 MKDSSDIVYDDSSLLTCRSPELKRRLHRRTSKASQESLKLLRIIFPLLVAPLCITSFIFTCLYAHIYAREGSYGPEDWPKCLTVPNIGNLHLDNNRFCTSASNFAGQAYLSLLVAAGGLQLGLRDNDYLLFSSFTCIVGLLGITIYRESYPYFLDPHFMSTTLFTLSKYIHPRIV 175
            MKDSSDIVYDDSSLLTCRSPELKRRLHRRTSKASQESLKLLRIIFPLLVAPLCITSFIFTCLYAHIYAREGSYGPEDWPKCLTVPNIGNLHLDNNRFCTSASNFAGQAYLSLLVAAGGLQLGLRDNDYLLFSSFTCIVGLLGITIYRESYPYFLDPHFMSTTLFTLSKYIHPRIV
Sbjct:    1 MKDSSDIVYDDSSLLTCRSPELKRRLHRRTSKASQESLKLLRIIFPLLVAPLCITSFIFTCLYAHIYAREGSYGPEDWPKCLTVPNIGNLHLDNNRFCTSASNFAGQAYLSLLVAAGGLQLGLRDNDYLLFSSFTCIVGLLGITIYRESYPYFLDPHFMSTTLFTLSKYIHPRIV 175          
BLAST of EWM24397.1 vs. NCBI_GenBank
Match: gi|585109123|gb|EWM26963.1| (hypothetical protein Naga_101509g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 106.686 bits (265), Expect = 5.626e-25
Identity = 58/155 (37.42%), Postives = 88/155 (56.77%), Query Frame = 0
Query:   21 ELKRRLHRRTSKASQESLKLLRIIFPLLVAPLCITSFIFTCLYAHIYAREGSYGPEDWPKCLTVPNIGNLHL-DNNRFCTSASNFAGQAYLSLLVAAGGLQLGLRDNDYLLFSSFTCIVGLLGITIYRESYPYFLDPHFMSTTLFTLSKYIHPRI 174
            +L R       +  ++++  L+I+  L+  P  + S I   +YA I  R+  Y  EDW +CL  PN G   + D   F  SA+ FA +A + L+++  G+  GL D+D L ++ F    GLLG+T+YRES P   +P  MS TL TL+K+IHPR+
Sbjct:    4 QLNRWGGVHNEEVDRKAIFALKILL-LVAIPTVMASTILATVYAWIQGRQYGYTVEDWQRCLVSPNKGGFGVGDQTLFTGSAATFAMKAVVFLILSFNGVNAGLIDHDMLPYALFVSFSGLLGMTVYRESSPIQPEPRVMSATLVTLTKFIHPRM 157          
BLAST of EWM24397.1 vs. NCBI_GenBank
Match: gi|585108060|gb|EWM26072.1| (hypothetical protein Naga_100278g4 [Nannochloropsis gaditana])

HSP 1 Score: 107.842 bits (268), Expect = 2.372e-24
Identity = 56/156 (35.90%), Postives = 89/156 (57.05%), Query Frame = 0
Query:   24 RRLHRRTSKASQESLKLLRIIFPLLVAPLCITSFIFTCLYAHIYAREGSYGPEDWPKCLTVPN-----IGNLHLDNNRFCTSASNFAGQAYLSLLVAAGGLQLGLRDNDYLLFSSFTCIVGLLGITIYRESYPYFLDPHFMSTTLFTLSKYIHPRI 174
            +RL RR  +    SL  LRI+F + + PL I +  F C+YA I+A + SY  +DW +CL  PN     +G    D   +  +A+++AG+ ++ ++V      +G++D D L +S F  ++ +LGI +YRE+ P    P  +S TL TL KYI P +
Sbjct:   48 QRLARRYFQIQDRSLTALRILFVVGI-PLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNM 202          
BLAST of EWM24397.1 vs. NCBI_GenBank
Match: gi|553182461|ref|XP_005853731.1| (hypothetical protein NGA_0163502 [Nannochloropsis gaditana CCMP526] >gi|553186167|ref|XP_005854371.1| hypothetical protein NGA_0163501 [Nannochloropsis gaditana CCMP526] >gi|422294686|gb|EKU21986.1| hypothetical protein NGA_0163501 [Nannochloropsis gaditana CCMP526] >gi|422295328|gb|EKU22627.1| hypothetical protein NGA_0163502 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 106.686 bits (265), Expect = 3.091e-24
Identity = 56/164 (34.15%), Postives = 92/164 (56.10%), Query Frame = 0
Query:   16 TCRSPELKRRLHRRTSKASQESLKLLRIIFPLLVAPLCITSFIFTCLYAHIYAREGSYGPEDWPKCLTVPN-----IGNLHLDNNRFCTSASNFAGQAYLSLLVAAGGLQLGLRDNDYLLFSSFTCIVGLLGITIYRESYPYFLDPHFMSTTLFTLSKYIHPRI 174
            + +  +  +RL RR  +    SL  LRI+F ++  PL I +  F C+YA I+A + SY  +DW +CL  PN     +G    D   +  +A+++AG+ ++ ++V      +G++D D L +S F  ++ +LGI +YRE+ P    P  +S TL TL KYI P +
Sbjct:   40 SSKQTKEDQRLARRYFQIQDRSLTALRILF-VVGIPLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANMMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNM 202          
BLAST of EWM24397.1 vs. NCBI_GenBank
Match: gi|585108059|gb|EWM26071.1| (hypothetical protein Naga_100278g4 [Nannochloropsis gaditana])

HSP 1 Score: 107.071 bits (266), Expect = 7.182e-24
Identity = 56/164 (34.15%), Postives = 92/164 (56.10%), Query Frame = 0
Query:   16 TCRSPELKRRLHRRTSKASQESLKLLRIIFPLLVAPLCITSFIFTCLYAHIYAREGSYGPEDWPKCLTVPN-----IGNLHLDNNRFCTSASNFAGQAYLSLLVAAGGLQLGLRDNDYLLFSSFTCIVGLLGITIYRESYPYFLDPHFMSTTLFTLSKYIHPRI 174
            + +  +  +RL RR  +    SL  LRI+F + + PL I +  F C+YA I+A + SY  +DW +CL  PN     +G    D   +  +A+++AG+ ++ ++V      +G++D D L +S F  ++ +LGI +YRE+ P    P  +S TL TL KYI P +
Sbjct:   40 SSKQTKEDQRLARRYFQIQDRSLTALRILFVVGI-PLTIINISFACVYAWIFANQYSYTKDDWQRCLVYPNQAVDPLGGSTADKTNYLMAAASYAGRVFVFIIVVFKMAYVGVKDTDILPYSLFANVMAILGIIVYREAEPIQPQPQQLSATLLTLVKYIQPNM 202          
The following BLAST results are available for this feature:
BLAST of EWM24397.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585105799|gb|EWM24397.1|1.004e-125100.00hypothetical protein Naga_100283g1 [Nannochloropsi... [more]
gi|585109123|gb|EWM26963.1|5.626e-2537.42hypothetical protein Naga_101509g1, partial [Nanno... [more]
gi|585108060|gb|EWM26072.1|2.372e-2435.90hypothetical protein Naga_100278g4 [Nannochloropsi... [more]
gi|553182461|ref|XP_005853731.1|3.091e-2434.15hypothetical protein NGA_0163502 [Nannochloropsis ... [more]
gi|585108059|gb|EWM26071.1|7.182e-2434.15hypothetical protein Naga_100278g4 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6298rna6298Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications