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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100283g2.8473.mrna |
| Orig protein id | gnl|cribi|Naga_100283g2.8473 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:198313..199417 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6297 ID=rna6297|Name=rna6297|organism=Nannochloropsis gaditana|type=mRNA|length=1239bp
CACTGTATTGCCTGTTGCCCCTTCCAAACTGGATCCTAGTCAAGCTGCTT
CAGCATTGGCTCGCTAGCGTTTGCTTCGAAACTGCAAGTAAAATTTTGCT
GCCTTCTGATCTGCGTCTTGATCGCTCCACTATTTAACGGATCGAGCGAA
GCAGAAAAATGTCAATGCAGATGAAATAATATCGCTTACAGGACATTCCG
CGCCATAGACAGATGTGCTTTCACTATGCAAAGAAAAATACGATCGGCTG
GGTTCATCATTTGCATTTTCGTCAGAGGGCCGGAAGAACAGTCTAGTGGT
ATATTTAGACGTTTTCTTCGACTTGACTCCAAGAAAGACCTAACTCTTGA
CACCCTCTTTCATACCATCCAAATTCAAGAAGCATTCCAGATACACCAAA
AAAATCAAACATGTTCCGTGCCGCCCTCTTCAAAGCCTCTCGCTCTATGC
CTATGGCTAGCAATCATGCCCGGCACATTGTCCATCGGCATGCCTCTACC
GGTCGCTCTGCCTGGCTCCGGGACCCTGCAGTACGTGAGCACCTTGTCTT
GTCCTTTGGTTCAAATCTGCGACGCGTGACGGACCGCCAGTACCTGCGCT
TTGCTTGGTTTTTCAATTCCAACCATCTATCACGCGATCATTTCCTTTAA
TATTTGGTTGCGAAAGATGTGGATGCCAAGCCCATAAAAGTGACGCGTCT
ACACGCGATGCTACTTTTAGCACCCATTGCCGCGTATGCAACTGAGATAT
GCTTTACCTTTCTCCAAAAGTGTTCCTATTTCAACATTTTTATGTATCAT
TTCTCAACCCAATGAATATCTGACGTCTCACACATCTGCAAATTTACAAA
AAGGTGTATCCTCTGCTTGGCATTATTGGCAGCGCAATGGTCCTGTGCTC
TACCTTCATGGTTCACTTCACCACCTCCTCTCCTGATGTTCGTATCAACA
AGACAAAGCGTCAGAGCGTCGTGCGGGTGGATTAGAGCTGTAAAATCTTG
GAAACCGTTACCCCAGGGAAAACATTTTGCTGGTATGTGGTAAAGGGTCA
ACTATTTCAAAACCGAACCTGGGGTGACTAAAAAGAAGAAAAGAATAAAA
TTGGACAGAAGCGTCAATGGGAGAGAAGCATGACGAGAAGAGATCCTCTC
CCAGTTGACACTGTAAGCAGGAATTGACAGATTTTAAGAAGAAAAAAATG
TGGTGATAACAAATTAAGCAGAAATCAAATACGTCGCGA back to topprotein sequence of rna6297 >rna6297-protein ID=rna6297-protein|Name=rna6297|organism=Nannochloropsis gaditana|type=polypeptide|length=164bp
MQRKIRSAGFIICIFVRGPEEQSSGIFRRFLRLDSKKDLTLDTLFHTIQI
QEAFQIHQKNQTCSVPPSSKPLALCLWLAIMPGTLSIGMPLPVALPGSGT
LQCILCLALLAAQWSCALPSWFTSPPPLLMFVSTRQSVRASCGWIRAVKS
WKPLPQGKHFAGMW back to topmRNA from alignment at CM002468.1:198313..199417+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6297 ID=rna6297|Name=rna6297|organism=Nannochloropsis gaditana|type=mRNA|length=1105bp|location=Sequence derived from alignment at CM002468.1:198313..199417+ (Nannochloropsis gaditana)
ATGCAAAGAAAAATACGATCGGCTGGGTTCATCATTTGCATTTTCGTCAG
AGGGCCGGAAGAACAGTCTAGTGGTATATTTAGACGTTTTCTTCGACTTG
ACTCCAAGAAAGACCTAACTCTTGACACCCTCTTTCATACCATCCAAATT
CAAGAAGCATTCCAGATACACCAAAAAAATCAAACATGTTCCGTGCCGCC
CTCTTCAAAGCCTCTCGCTCTATGCCTATGGCTAGGTGAGTTTATATTGA
GGGTGTCAAGAACACAACCTCGAATGAATGGAGGCAGAGCTCATAAGCAT
ACCCCTAACCTCATGTACAAATACAGCAATCATGCCCGGCACATTGTCCA
TCGGCATGCCTCTACCGGTCGCTCTGCCTGGCTCCGGGACCCTGCAGTAC
GTGAGCACCTTGTCTTGTCCTTTGGTTCAAATCTGCGACGCGTGACGGAC
CGCCAGTACCTGCGCTTTGCTTGGTTTTTCAATTCCAACCATCTATCACG
CGATCATTTCCTTTAATATTTGGTTGCGAAAGATGTGGATGCCAAGCCCA
TAAAAGTGACGCGTCTACACGCGATGCTACTTTTAGCACCCATTGCCGCG
TATGCAACTGAGATATGCTTTACCTTTCTCCAAAAGTGTTCCTATTTCAA
CATTTTTATGTATCATTTCTCAACCCAATGAATATCTGACGTCTCACACA
TCTGCAAATTTACAAAAAGGTGTATCCTCTGCTTGGCATTATTGGCAGCG
CAATGGTCCTGTGCTCTACCTTCATGGTTCacttcaccacctcctctcct
gatGTTCGTATCAACAAGACAAAGCGTCAGAGCGTCGTGCGGGTGGATTA
GAGCTGTAAAATCTTGGAAACCGTTACCCCAGGGAAAACATTTTGCTGGT
ATGTGGTAAAGGGTCAACTATTTCAAAACCGAACCTGGGGTGActaaaaa
gaagaaaagaataaAATTGGACAGAAGCGTCAATGGGAGAGAAGCATGAC
GAGAAGAGATCCTCTCCCAGTTGACACTGTAAGCAGGAATTGACAGATTt
taagaagaaaaaaatgtggTGATAACAAATTAAGCAGAAATCAAATACGT
CGCGA back to topCoding sequence (CDS) from alignment at CM002468.1:198313..199417+ >rna6297 ID=rna6297|Name=rna6297|organism=Nannochloropsis gaditana|type=CDS|length=1485bp|location=Sequence derived from alignment at CM002468.1:198313..199417+ (Nannochloropsis gaditana)
ATGCAAAGAAAAATACGATCGGCTGGGTTCATCATTTGCATTTTCGTCAG
AGGGCCGGAAGAACAGTCTAGTGGTATATTTAGACGTTTTCTTCGACTTG
ACTCCAAGAAAGACCTAACTCTTGACACCCTCTTTCATACCATCCAAATT
CAAGAAGCATTCCAGATACACCAAAAAAATCAAACATGTTCCGTGCCGCC
CTCTTCAAAGCCTCTCGCTCTATGCCTATGGCTAGCAATCATGCCCGGCA
CATTGTCCATCGGCATGCCTCTACCGGTCGCTCTGCCTGGCTCCGGGACC
CTGCAGTGTATCCTCTGCTTGGCATTATTGGCAGCGCAATGGTCCTGTGC
TCTACCTTCATGGTTCacttcaccacctcctctcctgatGTTCGTATCAA
CAAGACAAAGCGTCAGAGCGTCGTGCGGGTGGATTAGAGCTGTAAAATCT
TGGAAACCGTTACCCCAGGGAAAACATTTTGCTGGTATGTGGTAAATGCA
AAGAAAAATACGATCGGCTGGGTTCATCATTTGCATTTTCGTCAGAGGGC
CGGAAGAACAGTCTAGTGGTATATTTAGACGTTTTCTTCGACTTGACTCC
AAGAAAGACCTAACTCTTGACACCCTCTTTCATACCATCCAAATTCAAGA
AGCATTCCAGATACACCAAAAAAATCAAACATGTTCCGTGCCGCCCTCTT
CAAAGCCTCTCGCTCTATGCCTATGGCTAGCAATCATGCCCGGCACATTG
TCCATCGGCATGCCTCTACCGGTCGCTCTGCCTGGCTCCGGGACCCTGCA
GTGTATCCTCTGCTTGGCATTATTGGCAGCGCAATGGTCCTGTGCTCTAC
CTTCATGGTTCacttcaccacctcctctcctgatGTTCGTATCAACAAGA
CAAAGCGTCAGAGCGTCGTGCGGGTGGATTAGAGCTGTAAAATCTTGGAA
ACCGTTACCCCAGGGAAAACATTTTGCTGGTATGTGGTAAATGCAAAGAA
AAATACGATCGGCTGGGTTCATCATTTGCATTTTCGTCAGAGGGCCGGAA
GAACAGTCTAGTGGTATATTTAGACGTTTTCTTCGACTTGACTCCAAGAA
AGACCTAACTCTTGACACCCTCTTTCATACCATCCAAATTCAAGAAGCAT
TCCAGATACACCAAAAAAATCAAACATGTTCCGTGCCGCCCTCTTCAAAG
CCTCTCGCTCTATGCCTATGGCTAGCAATCATGCCCGGCACATTGTCCAT
CGGCATGCCTCTACCGGTCGCTCTGCCTGGCTCCGGGACCCTGCAGTGTA
TCCTCTGCTTGGCATTATTGGCAGCGCAATGGTCCTGTGCTCTACCTTCA
TGGTTCacttcaccacctcctctcctgatGTTCGTATCAACAAGACAAAG
CGTCAGAGCGTCGTGCGGGTGGATTAGAGCTGTAAAATCTTGGAAACCGT
TACCCCAGGGAAAACATTTTGCTGGTATGTGGTAA back to top
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