EWM24391.1, cds6282 (CDS) Nannochloropsis gaditana

Overview
NameEWM24391.1
Unique Namecds6282
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:198313..198547 +
Alignment locationCM002468.1:198639..198708 +
Alignment locationCM002468.1:199032..199221 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24391.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100283g2.8473.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:198313..198547 +
CM002468.1supercontigCM002468.1:198639..198708 +
CM002468.1supercontigCM002468.1:199032..199221 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24391.1 vs. NCBI_GenBank
Match: gi|585105793|gb|EWM24391.1| (hypothetical protein Naga_100283g2 [Nannochloropsis gaditana])

HSP 1 Score: 331.257 bits (848), Expect = 8.313e-115
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0 
Query:    1 MQRKIRSAGFIICIFVRGPEEQSSGIFRRFLRLDSKKDLTLDTLFHTIQIQEAFQIHQKNQTCSVPPSSKPLALCLWLAIMPGTLSIGMPLPVALPGSGTLQCILCLALLAAQWSCALPSWFTSPPPLLMFVSTRQSVRASCGWIRAVKSWKPLPQGKHFAGMW 164
            MQRKIRSAGFIICIFVRGPEEQSSGIFRRFLRLDSKKDLTLDTLFHTIQIQEAFQIHQKNQTCSVPPSSKPLALCLWLAIMPGTLSIGMPLPVALPGSGTLQCILCLALLAAQWSCALPSWFTSPPPLLMFVSTRQSVRASCGWIRAVKSWKPLPQGKHFAGMW
Sbjct:    1 MQRKIRSAGFIICIFVRGPEEQSSGIFRRFLRLDSKKDLTLDTLFHTIQIQEAFQIHQKNQTCSVPPSSKPLALCLWLAIMPGTLSIGMPLPVALPGSGTLQCILCLALLAAQWSCALPSWFTSPPPLLMFVSTRQSVRASCGWIRAVKSWKPLPQGKHFAGMW 164
[Close]
BLAST of EWM24391.1 vs. NCBI_GenBank
Match: gi|585105794|gb|EWM24392.1| (hypothetical protein Naga_100283g2 [Nannochloropsis gaditana])

HSP 1 Score: 208.764 bits (530), Expect = 4.140e-67
Identity = 103/108 (95.37%), Postives = 105/108 (97.22%), Query Frame = 0 
Query:    1 MQRKIRSAGFIICIFVRGPEEQSSGIFRRFLRLDSKKDLTLDTLFHTIQIQEAFQIHQKNQTCSVPPSSKPLALCLWLAIMPGTLSIGMPLPVALPGSGTLQCILCLA 108
            MQRKIRSAGFIICIFVRGPEEQSSGIFRRFLRLDSKKDLTLDTLFHTIQIQEAFQIHQKNQTCSVPPSSKPLALCLWLAIMPGTLSIGMPLPVALPGSGTLQ +  L+
Sbjct:    1 MQRKIRSAGFIICIFVRGPEEQSSGIFRRFLRLDSKKDLTLDTLFHTIQIQEAFQIHQKNQTCSVPPSSKPLALCLWLAIMPGTLSIGMPLPVALPGSGTLQYVSTLS 108
The following BLAST results are available for this feature:
BLAST of EWM24391.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105793|gb|EWM24391.1|8.313e-115100.00hypothetical protein Naga_100283g2 [Nannochloropsi... [more]
gi|585105794|gb|EWM24392.1|4.140e-6795.37hypothetical protein Naga_100283g2 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6297rna6297Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications