rna6290, rna6290 (mRNA) Nannochloropsis gaditana

Overview
Namerna6290
Unique Namerna6290
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length339
Alignment locationCM002468.1:180421..181380 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100911g1.7365.mrna
Orig protein idgnl|cribi|Naga_100911g1.7365
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:180421..181380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100911g1gene6083Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6290rna6290-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24400.1cds6275Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6290 ID=rna6290|Name=rna6290|organism=Nannochloropsis gaditana|type=mRNA|length=339bp
ATGAAAGCTCTCAACCCAATCCTGGCAGGAACCCAAGACCGCTGTGACTT
CTTCTCGAAAGAGGAGGGATTCACAGTGTTCGGCCGGTATTTTTCGGCCC
AACTTTGCACAATATCAGCCCACGCGTTCTTTATTGTGCAAGCATTGCAT
CGCATGCACATAGCTGCGCCTAAATCCGGATGCCCGTCAGCTTCTATGAC
CAGGCGGCCCATATCGTCCTCCTATGTTGGAGGGCGGCATGTTGGAGCAG
GCGACCATCACGAAATCCTAAGAATGGAAATGAGTTCATGGATTGTTGAA
ATGTCAGTCAAGGAACCTGTAATGAAGGGTCTTCGATGA
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protein sequence of rna6290

>rna6290-protein ID=rna6290-protein|Name=rna6290|organism=Nannochloropsis gaditana|type=polypeptide|length=110bp
MYLWGRGASADIPSSPSSSSSLSSTWDEEDLRSRYTLEYWEELYGRLRHA
RDPRSFDQEEVVRIVRLIAQLLMLGEGMEDERMFEFFGQRNLLPAFCQMT
RCTICSLKTA
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mRNA from alignment at CM002468.1:180421..181380+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6290 ID=rna6290|Name=rna6290|organism=Nannochloropsis gaditana|type=mRNA|length=960bp|location=Sequence derived from alignment at CM002468.1:180421..181380+ (Nannochloropsis gaditana)
ATGTATCTTTGGGGGAGAGGgtaagggaggtgggggcgtCGGGatccttc
ccccctaccATCACTCTCATACAACCCGCTCCATCATCATTGTTCCTGCT
CCTATCCTCCTCATTCAGTGCTTCCGCAGATATCCCTTcatctccatctt
cctcgtcctctttgtcctccacgTGGGATGAAGAAGACCTGAGATCGCGT
TATACCCTAGAATACTGGGAAGAATTGTATGGGCGATTGCGTCACGCCAG
GGACCCCAGAAGTTTTGATCAGGTGAGCATCCAAATACTAGCCGGCTGTC
GCATACATCAAAAAGTAGACAGTCCTCGCAATCGACCCTATTTGGGGCGT
TCTGGATCGACTTTCGCGCCATTCCTTCTTATTCTTTCCCACTTTCCGTT
CGctgttcctccttccctccctcccttccctcctcccccaggaggaggtg
gtcaGAATCGTGCGCCTCATCGCTCAGTTATTGatgctgggcgaggggat
ggaggacgaaagGATGTTCGAATTCTTCGGGCAGAGAAATTTGCTGCCAG
CGTTTTGTCAAATGGTGAGGCTGGAGGaaacgggggaaggagggcgtgag
ggagggcgggaggaagggcaggagggagggaggagaaagactcATGGCGA
AGGGTGCGAAATGGGACACTGGCCCATGTTTGAAGAATGTCGAGTGGATA
TTTATGTAGTATTCTGAAACACCTTCTTTCCATCGGgacttccctctttc
cctccctccctccatccctccctcctgccttccctccctccctccctccc
tccctccctcccttcctccttccctccctccctttccgccctcagGCCTG
CGACCCCCACCCCTTCGTcgcctcccaggccctccagtccctctccctcc
tcctcttcaacacCCAACGGACAGACACGCTGCACTATCTGCTCTCTCAA
AACTGCCTGA
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Coding sequence (CDS) from alignment at CM002468.1:180421..181380+

>rna6290 ID=rna6290|Name=rna6290|organism=Nannochloropsis gaditana|type=CDS|length=1332bp|location=Sequence derived from alignment at CM002468.1:180421..181380+ (Nannochloropsis gaditana)
ATGTATCTTTGGGGGAGAGGTGCTTCCGCAGATATCCCTTcatctccatc
ttcctcgtcctctttgtcctccacgTGGGATGAAGAAGACCTGAGATCGC
GTTATACCCTAGAATACTGGGAAGAATTGTATGGGCGATTGCGTCACGCC
AGGGACCCCAGAAGTTTTGATCAGgaggaggtggtcaGAATCGTGCGCCT
CATCGCTCAGTTATTGatgctgggcgaggggatggaggacgaaagGATGT
TCGAATTCTTCGGGCAGAGAAATTTGCTGCCAGCGTTTTGTCAAATGACA
CGCTGCACTATCTGCTCTCTCAAAACTGCCTGAATGTATCTTTGGGGGAG
AGGTGCTTCCGCAGATATCCCTTcatctccatcttcctcgtcctctttgt
cctccacgTGGGATGAAGAAGACCTGAGATCGCGTTATACCCTAGAATAC
TGGGAAGAATTGTATGGGCGATTGCGTCACGCCAGGGACCCCAGAAGTTT
TGATCAGgaggaggtggtcaGAATCGTGCGCCTCATCGCTCAGTTATTGa
tgctgggcgaggggatggaggacgaaagGATGTTCGAATTCTTCGGGCAG
AGAAATTTGCTGCCAGCGTTTTGTCAAATGACACGCTGCACTATCTGCTC
TCTCAAAACTGCCTGAATGTATCTTTGGGGGAGAGGTGCTTCCGCAGATA
TCCCTTcatctccatcttcctcgtcctctttgtcctccacgTGGGATGAA
GAAGACCTGAGATCGCGTTATACCCTAGAATACTGGGAAGAATTGTATGG
GCGATTGCGTCACGCCAGGGACCCCAGAAGTTTTGATCAGgaggaggtgg
tcaGAATCGTGCGCCTCATCGCTCAGTTATTGatgctgggcgaggggatg
gaggacgaaagGATGTTCGAATTCTTCGGGCAGAGAAATTTGCTGCCAGC
GTTTTGTCAAATGACACGCTGCACTATCTGCTCTCTCAAAACTGCCTGAA
TGTATCTTTGGGGGAGAGGTGCTTCCGCAGATATCCCTTcatctccatct
tcctcgtcctctttgtcctccacgTGGGATGAAGAAGACCTGAGATCGCG
TTATACCCTAGAATACTGGGAAGAATTGTATGGGCGATTGCGTCACGCCA
GGGACCCCAGAAGTTTTGATCAGgaggaggtggtcaGAATCGTGCGCCTC
ATCGCTCAGTTATTGatgctgggcgaggggatggaggacgaaagGATGTT
CGAATTCTTCGGGCAGAGAAATTTGCTGCCAGCGTTTTGTCAAATGACAC
GCTGCACTATCTGCTCTCTCAAAACTGCCTGA
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Synonyms
Publications