rna6288, rna6288 (mRNA) Nannochloropsis gaditana

Overview
Namerna6288
Unique Namerna6288
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length644
Alignment locationCM002468.1:177347..178333 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100911g3.7363.mrna
Orig protein idgnl|cribi|Naga_100911g3.7363
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:177347..178333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100911g3gene6081Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24398.1cds6273Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6288rna6288-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6288 ID=rna6288|Name=rna6288|organism=Nannochloropsis gaditana|type=mRNA|length=644bp
GGGAAGAAGGGATGGAGGGGAGGAGGGTGAAAAGGGAGGGGGAAGGAGTA
GAGGAGGAGGAGGAGAGAGGAGTGCATGACCACCCTCCCTGCGGGGGAGA
GGGAAGGAGGAAGGGGGTGGGGGCGACGAAGAACAGGAGGAGGAGGAGGA
GGAGGGAGAAAGAGGAGGTTCAGGAACAGGGGAAGGTTCACGCCACGAAA
AAATGCGCGAGTGCTCAAGGATGGATGAAAAAAACTTGTAGTACGGGGAG
AATGGATGAATGGAGGTGGTGATGAGGAGGGAGAAAGGGAGGGTAAGTGG
ACGGAATGGGAGAGGTGGCGGTGATGAGGAAGGAGGGAAAAAGAGGGTAG
CGAAGGGATGGAGTGGCGTCGAGCCGAGGAGGGACGGGCGTGAGTCACGG
GATCGCGGGGTAGGAAGGGCGAACGGAGGGAGGGAGAGAAGGAGGGAAGG
AGGGAGGGAGGGAAGGAGGGAGGGAAGGAGGAAAGGAAGGTATAAGGAGA
CCCTCCGGGCGGAGTTGTGCAACAAAGAAGTCTGTCGCCCGTATCTTGCT
CTCACCTTAAGTGGACATGCTCCCCGCGACCAGAACGAGCTTAAAATGGA
GCACCTTCCTCCTCAGTTCCCCGCCCTCCCTCCTCCCCCCCCCC
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protein sequence of rna6288

>rna6288-protein ID=rna6288-protein|Name=rna6288|organism=Nannochloropsis gaditana|type=polypeptide|length=293bp
MLAFSRRSIAGLRHCVDHVTSRRLLPNVKSTILRLACPKFVSTHPQSLRS
DPPRRGDNIGPRTRYQHCPSHALSGFDPRSSRRPFFPLLSSFPLRLPGTS
AFSSSTGGEGYGLLKLDPDFTVFGNDCILKFRLTNYQFPASTAIPGGGGE
GGAGPSRVKPINSRLLVEFTRRKSSGTYDWKGTKRLSLTAEEIGLLLDCG
PSEELIFRRTRGGEGIGGGTIESAGPVPQREMKVIPTTTGGWAVRFSIEN
EDLFDVTVSRGRKAVLKSLIHTSLPAIFGWGGGSRGEGGRRGP
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mRNA from alignment at CM002468.1:177347..178333-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6288 ID=rna6288|Name=rna6288|organism=Nannochloropsis gaditana|type=mRNA|length=987bp|location=Sequence derived from alignment at CM002468.1:177347..178333- (Nannochloropsis gaditana)
CCACTTGTTATGAAGGAGAAAGAGCCTACTCGTGCAAGCGCATACAGAGG
ACGTGGCGACCTGACAAACCTTCATTCCCCACCTCCCCACCGTCCCAGAC
GAAAGGAGCATGCTGGCGTTTTCCCGTCGATCGATCGCCGGCCTCCGTCA
CTGTGTTGACCACGTGACATCCCGGAGACTCCTTCCTAACGTGAAAAGCA
CGATTTTGCGTCTGGCCTGTCCGAAATTCGTCAGCACCCACCCTCAGAGC
TTAAGGTCAGACCCACCGAGAAGGGGGGACAACATCGGCCCCCGGACTCG
CTATCAACACTGCCCTTCCCACGCCCTCTCTGGCTTTGACCCTCGTTCCT
CGCGTCGTCCCTTTTTTCCTCTCCTCTCCTCCTTTCCACTCCGTCTTCCT
GGGACCTCCGCCTTCTCGTCCTCCACGGGGGGGGAGGGTTACGGGCTGTT
GAAACTCGACCCTGACTTCACTGTGTTTGGGAACGACTGCATCCTGAAGT
TCCGCCTCACAAACTATCAATTTCCGGCTAGCACGGCGATCCCAGGGGGT
GGGGGCGAAGGGGGCGCAGGACCATCCAGAGTAAAGCCTATTAACTCACG
GCTCCTGGTGGAATTTACACGGCGCAAAAGTTCGGGCACGTACGATTGGA
AAGGAACCAAGCGTTTATCGTTGACTGCGGAGGAGATCGGCCTCCTGCTG
GACTGTGGGCCGTCGGAGGAGCTGATTTTTCGCCGTACCCGAGGCGGGGA
GGGCATAGGGGGTGGGACCATCGAGTCGGCGGGTCCGGTGCCACAACGGG
AAATGAAGGTGATCCCAACCACTACGGGCGGATGGGCCGTACGTTTCTCG
ATCGAAAACGAGGACTTATTCGACGTGACCGTGAGCCGGGGCCGGAAGGC
TGTCTTGAAAAGTTTGATCCACACTAGTCTGCCTGCTATCTTTGGGTGGG
GGGGAGGGAGTCGGGGAGAGGGGGGGAGAAGGGGGCC
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Coding sequence (CDS) from alignment at CM002468.1:177347..178333-

>rna6288 ID=rna6288|Name=rna6288|organism=Nannochloropsis gaditana|type=CDS|length=878bp|location=Sequence derived from alignment at CM002468.1:177347..178333- (Nannochloropsis gaditana)
ATGCTGGCGTTTTCCCGTCGATCGATCGCCGGCCTCCGTCACTGTGTTGA
CCACGTGACATCCCGGAGACTCCTTCCTAACGTGAAAAGCACGATTTTGC
GTCTGGCCTGTCCGAAATTCGTCAGCACCCACCCTCAGAGCTTAAGGTCA
GACCCACCGAGAAGGGGGGACAACATCGGCCCCCGGACTCGCTATCAACA
CTGCCCTTCCCACGCCCTCTCTGGCTTTGACCCTCGTTCCTCGCGTCGTC
CCTTTTTTCCTCTCCTCTCCTCCTTTCCACTCCGTCTTCCTGGGACCTCC
GCCTTCTCGTCCTCCACGGGGGGGGAGGGTTACGGGCTGTTGAAACTCGA
CCCTGACTTCACTGTGTTTGGGAACGACTGCATCCTGAAGTTCCGCCTCA
CAAACTATCAATTTCCGGCTAGCACGGCGATCCCAGGGGGTGGGGGCGAA
GGGGGCGCAGGACCATCCAGAGTAAAGCCTATTAACTCACGGCTCCTGGT
GGAATTTACACGGCGCAAAAGTTCGGGCACGTACGATTGGAAAGGAACCA
AGCGTTTATCGTTGACTGCGGAGGAGATCGGCCTCCTGCTGGACTGTGGG
CCGTCGGAGGAGCTGATTTTTCGCCGTACCCGAGGCGGGGAGGGCATAGG
GGGTGGGACCATCGAGTCGGCGGGTCCGGTGCCACAACGGGAAATGAAGG
TGATCCCAACCACTACGGGCGGATGGGCCGTACGTTTCTCGATCGAAAAC
GAGGACTTATTCGACGTGACCGTGAGCCGGGGCCGGAAGGCTGTCTTGAA
AAGTTTGATCCACACTAGTCTGCCTGCTATCTTTGGGTGGGGGGGAGGGA
GTCGGGGAGAGGGGGGGAGAAGGGGGCC
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Synonyms
Publications