EWM24398.1, cds6273 (CDS) Nannochloropsis gaditana

Overview
NameEWM24398.1
Unique Namecds6273
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:177347..178224 -

Link to JBrowse

Properties
Property NameValue
Start range177347
Start range.
Protein idEWM24398.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100911g3.7363.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:177347..178224 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR013742Plant_TF
IPR009044ssDNA-bd_transcriptional_reg
Homology
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BLAST of EWM24398.1 vs. NCBI_GenBank
Match: gi|585105801|gb|EWM24398.1| (hypothetical protein Naga_100911g3, partial [Nannochloropsis gaditana])

HSP 1 Score: 584.719 bits (1506), Expect = 0.000e+0
Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 0 
Query:    1 MLAFSRRSIAGLRHCVDHVTSRRLLPNVKSTILRLACPKFVSTHPQSLRSDPPRRGDNIGPRTRYQHCPSHALSGFDPRSSRRPFFPLLSSFPLRLPGTSAFSSSTGGEGYGLLKLDPDFTVFGNDCILKFRLTNYQFPASTAIPGGGGEGGAGPSRVKPINSRLLVEFTRRKSSGTYDWKGTKRLSLTAEEIGLLLDCGPSEELIFRRTRGGEGIGGGTIESAGPVPQREMKVIPTTTGGWAVRFSIENEDLFDVTVSRGRKAVLKSLIHTSLPAIFGWGGGSRGEGGRRGP 293
            MLAFSRRSIAGLRHCVDHVTSRRLLPNVKSTILRLACPKFVSTHPQSLRSDPPRRGDNIGPRTRYQHCPSHALSGFDPRSSRRPFFPLLSSFPLRLPGTSAFSSSTGGEGYGLLKLDPDFTVFGNDCILKFRLTNYQFPASTAIPGGGGEGGAGPSRVKPINSRLLVEFTRRKSSGTYDWKGTKRLSLTAEEIGLLLDCGPSEELIFRRTRGGEGIGGGTIESAGPVPQREMKVIPTTTGGWAVRFSIENEDLFDVTVSRGRKAVLKSLIHTSLPAIFGWGGGSRGEGGRRGP
Sbjct:    1 MLAFSRRSIAGLRHCVDHVTSRRLLPNVKSTILRLACPKFVSTHPQSLRSDPPRRGDNIGPRTRYQHCPSHALSGFDPRSSRRPFFPLLSSFPLRLPGTSAFSSSTGGEGYGLLKLDPDFTVFGNDCILKFRLTNYQFPASTAIPGGGGEGGAGPSRVKPINSRLLVEFTRRKSSGTYDWKGTKRLSLTAEEIGLLLDCGPSEELIFRRTRGGEGIGGGTIESAGPVPQREMKVIPTTTGGWAVRFSIENEDLFDVTVSRGRKAVLKSLIHTSLPAIFGWGGGSRGEGGRRGP 293
The following BLAST results are available for this feature:
BLAST of EWM24398.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105801|gb|EWM24398.1|0.000e+0100.00hypothetical protein Naga_100911g3, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6288rna6288Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications