rna6285, rna6285 (mRNA) Nannochloropsis gaditana

Overview
Namerna6285
Unique Namerna6285
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length401
Alignment locationCM002468.1:171502..172103 +

Link to JBrowse

Properties
Property NameValue
Productelmo domain-containing protein 1
Orig transcript idgnl|cribi|Naga_102658g1.1482.mrna
Orig protein idgnl|cribi|Naga_102658g1.1482
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:171502..172103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102658g1gene6077Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6285rna6285-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24403.1cds6270Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6285 ID=rna6285|Name=rna6285|organism=Nannochloropsis gaditana|type=mRNA|length=401bp
AGCCACAGAGCAAGATGGGCCGGGCGTGGCTAATGCCTACATTGGAGGCG
TGGATGCTCCTGTGGTGGAGCTGGGCCCTCCATTTGTTGCGGGCGATGAT
CTTGCGCGGGGTGGATTATATCACAGGAAAAAGCGAGCTCGAACGGATCT
GCTCCGCGGACCCCCGGGCTCCTCCTTTCTCCATGTTTTCCCGCTTCCTC
CGCTTCCTTCGCCTCTCCCCCTACCCCAGTCCTTCCTCCCTCCTGGCCCA
TCCCACCGGTCGGGAAGCCTCCGCCTCCCTCCCTTCCCTCCTCCTCCGCT
ACAAGATTCCCACCTCCAACGTCCGCGTGCAAGAGAACCTGAAAGAGGTG
GCTGCTGCGCTTTCCATGCATGCGATTTGAACCTCTCTTCCCGCCCCCTC
C
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protein sequence of rna6285

>rna6285-protein ID=rna6285-protein|Name=rna6285|organism=Nannochloropsis gaditana|type=polypeptide|length=175bp
RRGGRKGGREGGREGGREGSVWSEIGFQGRDPATDFRGMGIFGLMQMVSF
AESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERLV
EAWREGGREGGKGKGMQVVNEVYADVWETFGRVWVDTDPENVMAFPPIWS
EVQRRERRRWRQRRGDESWRLLLEV
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mRNA from alignment at CM002468.1:171502..172103+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6285 ID=rna6285|Name=rna6285|organism=Nannochloropsis gaditana|type=mRNA|length=602bp|location=Sequence derived from alignment at CM002468.1:171502..172103+ (Nannochloropsis gaditana)
cgacggggagggaggaagggggggagggagggagggagggagggagggag
ggaggggtcggtCTGGTCGGAAATCGGGTTCCAGGGGCGAGACCCCGCCA
CGGATTTCCGCGGCATGGGTATATTCGGTTTGATGCAGATGGTCAGTTTC
GCGGAATCTCGGCCCGAAAAAGCCCGAAGCCTGCTCTTGGAAAGCGAACA
CCCGCGTCGGTGGTTTCCATGGGCGGTAACGGGCGTGAACGTCAGCCGTT
TCGTTTTTGAATTGTTgacggaggacgcggtcctggaggagcggctggtg
gaggcgtggcgggagggaggaagggagggagggaaggggaaagggatgca
GGTCGTGAACGAGGTGTACGCAGACGTCTGGGAAACCTTTGGGAGGGTCT
GGGTGGACACCGATCCGGAGAACGTGATGGCCTTTCCACCGATATGGAGC
GAGGTgcagcggagggagaggaggaggtggaggcaacGAAGAGGAGACGA
GAGCTGGCGTTTGTTGTTGGAAGTgtaggtggaagggggaaagcggacgg
AGGCCGCAGGCAAAGGGGGTGGGTAACGGAACTTtaaattcaaaatttca
aa
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Coding sequence (CDS) from alignment at CM002468.1:171502..172103+

>rna6285 ID=rna6285|Name=rna6285|organism=Nannochloropsis gaditana|type=CDS|length=528bp|location=Sequence derived from alignment at CM002468.1:171502..172103+ (Nannochloropsis gaditana)
cgacggggagggaggaagggggggagggagggagggagggagggagggag
ggaggggtcggtCTGGTCGGAAATCGGGTTCCAGGGGCGAGACCCCGCCA
CGGATTTCCGCGGCATGGGTATATTCGGTTTGATGCAGATGGTCAGTTTC
GCGGAATCTCGGCCCGAAAAAGCCCGAAGCCTGCTCTTGGAAAGCGAACA
CCCGCGTCGGTGGTTTCCATGGGCGGTAACGGGCGTGAACGTCAGCCGTT
TCGTTTTTGAATTGTTgacggaggacgcggtcctggaggagcggctggtg
gaggcgtggcgggagggaggaagggagggagggaaggggaaagggatgca
GGTCGTGAACGAGGTGTACGCAGACGTCTGGGAAACCTTTGGGAGGGTCT
GGGTGGACACCGATCCGGAGAACGTGATGGCCTTTCCACCGATATGGAGC
GAGGTgcagcggagggagaggaggaggtggaggcaacGAAGAGGAGACGA
GAGCTGGCGTTTGTTGTTGGAAGTgtag
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Synonyms
Publications