EWM24403.1, cds6270 (CDS) Nannochloropsis gaditana

Overview
NameEWM24403.1
Unique Namecds6270
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:171502..172029 +

Link to JBrowse

Properties
Property NameValue
Start range171502
Start range.
Protein idEWM24403.1
Productelmo domain-containing protein 1
Partialtrue
Orig transcript idgnl|cribi|Naga_102658g1.1482.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:171502..172029 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR006816Engulfment_cell_motility_ELMO
Homology
BLAST of EWM24403.1 vs. NCBI_GenBank
Match: gi|585105811|gb|EWM24403.1| (elmo domain-containing protein 1, partial [Nannochloropsis gaditana])

HSP 1 Score: 339.732 bits (870), Expect = 6.573e-118
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
Query:    1 RRGGRKGGREGGREGGREGSVWSEIGFQGRDPATDFRGMGIFGLMQMVSFAESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERLVEAWREGGREGGKGKGMQVVNEVYADVWETFGRVWVDTDPENVMAFPPIWSEVQRRERRRWRQRRGDESWRLLLEV 175
            RRGGRKGGREGGREGGREGSVWSEIGFQGRDPATDFRGMGIFGLMQMVSFAESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERLVEAWREGGREGGKGKGMQVVNEVYADVWETFGRVWVDTDPENVMAFPPIWSEVQRRERRRWRQRRGDESWRLLLEV
Sbjct:    1 RRGGRKGGREGGREGGREGSVWSEIGFQGRDPATDFRGMGIFGLMQMVSFAESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERLVEAWREGGREGGKGKGMQVVNEVYADVWETFGRVWVDTDPENVMAFPPIWSEVQRRERRRWRQRRGDESWRLLLEV 175          
BLAST of EWM24403.1 vs. NCBI_GenBank
Match: gi|635368894|emb|CCI42928.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 135.961 bits (341), Expect = 6.081e-36
Identity = 61/151 (40.40%), Postives = 91/151 (60.26%), Query Frame = 0
Query:   13 REGGREGSVWSEIGFQGRDPATDFRGMGIFGLMQMVSFAESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERLVEAWREGGREGGKGKGMQVVNEVYADVWETFGRVWVDTDPENVMAFPPIWSEVQRRERRRWRQR 163
            R  GR    W EIGFQG DP TDFRGMGI  L+Q++ F    P +A +LL ES HP  W+P++VTG+NV+ FV EL+ E  V  +    A      + G   G+  ++E Y DV+ +F ++W +++PE+ MAFP ++  ++   R+  + R
Sbjct:  155 RAHGRITKEWGEIGFQGVDPMTDFRGMGILSLIQLLYFTSKYPVEASALLTESNHPTHWYPFSVTGINVTAFVIELVQERLVDMKIYQYAETSDPSKHGIDNGLDAMHEFYCDVFTSFNKLWKESNPEDAMAFPSVFQTLKANTRKSLQMR 305          
BLAST of EWM24403.1 vs. NCBI_GenBank
Match: gi|325184167|emb|CCA18625.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 133.265 bits (334), Expect = 8.241e-35
Identity = 61/151 (40.40%), Postives = 92/151 (60.93%), Query Frame = 0
Query:   13 REGGREGSVWSEIGFQGRDPATDFRGMGIFGLMQMVSFAESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERLVEAWREGGREGGKGKGMQVVNEVYADVWETFGRVWVDTDPENVMAFPPIWSEVQRRERRRWRQR 163
            R  GR    WSEIGFQG DP TDFRGMG+  L+Q++ F    P +A++LL ES HP  W+P++VTG+NV+ FV EL+ E  V  +    A            G+  ++E Y DV+ +F ++W +++PE+ MAFP I+  ++   R+  ++R
Sbjct:  155 RAHGRITKEWSEIGFQGMDPMTDFRGMGVLSLVQLLYFTSKYPVEAQALLTESNHPTHWYPFSVTGINVTAFVIELVQERLVDIKIYQYADISDPSRDVMDNGLDAIHEFYCDVFTSFNKLWKESNPEDAMAFPSIFQALKGDIRKSLQKR 305          
BLAST of EWM24403.1 vs. NCBI_GenBank
Match: gi|970664637|gb|KUG01509.1| (ELMO domain-containing protein B [Phytophthora nicotianae])

HSP 1 Score: 128.257 bits (321), Expect = 2.886e-33
Identity = 65/150 (43.33%), Postives = 95/150 (63.33%), Query Frame = 0
Query:   13 REGGREGSVWSEIGFQGRDPATDFRGMGIFGLMQMVSFAESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERL--VEAWREGGREGGKGK--GMQVVNEVYADVWETFGRVWVDTDPENVMAFPPIWSEVQRRERR 158
            REGGR    W EIGFQG DP +DFR MG+  L+Q+  F +S   +A+  L ES HP RW+P+AVTG+NV+ FV EL      ++ERL  ++ +R  G  G      G++ +++ YA ++  F ++WVDT+P +VMAFP I+  ++   RR
Sbjct:  127 REGGRITKEWGEIGFQGTDPMSDFRSMGLLSLVQLNHFTKSYRIEAQRALEESNHPTRWYPFAVTGINVTAFVIEL------IDERLLDIKLYRHAGAGGDDNVDFGLKQLHDFYATIFTRFNKLWVDTNPRDVMAFPSIFQSLKDDIRR 270          
BLAST of EWM24403.1 vs. NCBI_GenBank
Match: gi|675211159|ref|XP_008914464.1| (hypothetical protein PPTG_18253 [Phytophthora parasitica INRA-310] >gi|566009316|gb|ETI32227.1| hypothetical protein F443_20895 [Phytophthora parasitica P1569] >gi|568004964|gb|ETL79271.1| hypothetical protein L917_20045 [Phytophthora parasitica] >gi|568034861|gb|ETM32523.1| hypothetical protein L914_20071 [Phytophthora parasitica] >gi|568085350|gb|ETN00258.1| hypothetical protein PPTG_18253 [Phytophthora parasitica INRA-310] >gi|570313010|gb|ETO60958.1| hypothetical protein F444_20913 [Phytophthora parasitica P1976] >gi|570967132|gb|ETP30251.1| hypothetical protein F442_20690 [Phytophthora parasitica P10297])

HSP 1 Score: 129.028 bits (323), Expect = 3.197e-33
Identity = 65/150 (43.33%), Postives = 95/150 (63.33%), Query Frame = 0
Query:   13 REGGREGSVWSEIGFQGRDPATDFRGMGIFGLMQMVSFAESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERL--VEAWREGGREGGKGK--GMQVVNEVYADVWETFGRVWVDTDPENVMAFPPIWSEVQRRERR 158
            REGGR    W EIGFQG DP +DFR MG+  L+Q+  F +S   +A+  L ES HP RW+P+AVTG+NV+ FV EL      ++ERL  ++ +R  G  G      G++ +++ YA ++  F ++WVDT+P +VMAFP I+  ++   RR
Sbjct:  157 REGGRITKEWGEIGFQGTDPMSDFRSMGLLSLVQLNHFTKSYRIEAQRALEESNHPTRWYPFAVTGINVTAFVIEL------IDERLLDIKLYRHAGAGGDDNVDFGLKQLHDFYATIFTRFNKLWVDTNPRDVMAFPSIFQSLKDDIRR 300          
BLAST of EWM24403.1 vs. NCBI_GenBank
Match: gi|567946798|gb|ETK72601.1| (hypothetical protein L915_20307 [Phytophthora parasitica] >gi|567975506|gb|ETL26052.1| hypothetical protein L916_20174 [Phytophthora parasitica] >gi|570936833|gb|ETP02090.1| hypothetical protein F441_20755 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 129.028 bits (323), Expect = 3.266e-33
Identity = 65/150 (43.33%), Postives = 95/150 (63.33%), Query Frame = 0
Query:   13 REGGREGSVWSEIGFQGRDPATDFRGMGIFGLMQMVSFAESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERL--VEAWREGGREGGKGK--GMQVVNEVYADVWETFGRVWVDTDPENVMAFPPIWSEVQRRERR 158
            REGGR    W EIGFQG DP +DFR MG+  L+Q+  F +S   +A+  L ES HP RW+P+AVTG+NV+ FV EL      ++ERL  ++ +R  G  G      G++ +++ YA ++  F ++WVDT+P +VMAFP I+  ++   RR
Sbjct:  157 REGGRITKEWGEIGFQGTDPMSDFRSMGLLSLVQLNHFTKSYRIEAQRALEESNHPTRWYPFAVTGINVTAFVIEL------IDERLLDIKLYRHAGAGGDDNVDFGLKQLHDFYATIFTRFNKLWVDTNPRDVMAFPSIFQSLKDDIRR 300          
BLAST of EWM24403.1 vs. NCBI_GenBank
Match: gi|1173927158|gb|OQR81228.1| (hypothetical protein ACHHYP_16638 [Achlya hypogyna])

HSP 1 Score: 126.716 bits (317), Expect = 1.718e-32
Identity = 57/151 (37.75%), Postives = 93/151 (61.59%), Query Frame = 0
Query:   13 REGGREGSVWSEIGFQGRDPATDFRGMGIFGLMQMVSFAESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERLVEAWREGGREGGKGKGMQVVNEVYADVWETFGRVWVDTDPENVMAFPPIWSEVQRRERRRWRQR 163
            R GGR    W EIGFQG DP TDFR MGI  L Q+  + ++  E+AR  L+ S HP +W+P+AVTG+N++ F++EL+ +D +L+ R+ +          K   ++ ++E Y  V+  F  +WV+++P ++MAFP I++ ++   R    +R
Sbjct:  157 RSGGRHTKEWGEIGFQGTDPMTDFRSMGILSLHQLNYYTKNYAEEARRALVHSNHPTQWYPFAVTGINITNFLYELI-QDRLLDSRMFD----------KDADIKELHEFYCSVFSMFDALWVESNPTDLMAFPTIFNHLKATIRYELLER 296          
BLAST of EWM24403.1 vs. NCBI_GenBank
Match: gi|669152802|ref|XP_008611963.1| (hypothetical protein, variant [Saprolegnia diclina VS20] >gi|530736315|gb|EQC34557.1| hypothetical protein, variant [Saprolegnia diclina VS20])

HSP 1 Score: 126.331 bits (316), Expect = 2.991e-32
Identity = 56/145 (38.62%), Postives = 89/145 (61.38%), Query Frame = 0
Query:   13 REGGREGSVWSEIGFQGRDPATDFRGMGIFGLMQMVSFAESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERLVEAWREGGREGGKGKGMQVVNEVYADVWETFGRVWVDTDPENVMAFPPIWSEVQRRER 157
            R GGR    W EIGFQG DP TDFR MG+  L Q++ +    PE+ARS L+ S HP +W+P+A+TG+N++ F+ EL      + +RL++A     R   K   +  ++E +  V+  F  +WV+++P ++MAFP I++ ++   R
Sbjct:  156 RTGGRHTKEWGEIGFQGTDPMTDFRSMGVLSLHQLLYYTSKYPEEARSALVHSNHPTQWYPFAITGINITNFLVEL------INDRLLDA-----RFYDKDVHIDELHEFFCQVFTMFDALWVESNPTDLMAFPTIFNHLKATIR 289          
BLAST of EWM24403.1 vs. NCBI_GenBank
Match: gi|673023588|ref|XP_008865755.1| (hypothetical protein H310_03601 [Aphanomyces invadans] >gi|574478983|gb|ETW05978.1| hypothetical protein H310_03601 [Aphanomyces invadans])

HSP 1 Score: 124.79 bits (312), Expect = 1.218e-31
Identity = 59/151 (39.07%), Postives = 90/151 (59.60%), Query Frame = 0
Query:   13 REGGREGSVWSEIGFQGRDPATDFRGMGIFGLMQMVSFAESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERLVEAWREGGREGGKGKGMQVVNEVYADVWETFGRVWVDTDPENVMAFPPIWSEVQRRERRRWRQR 163
            R GGR    W EIGFQG+DP TDFR MG+  L Q+V + E  P +AR  L+ + HP +W+P+AVTG+N++ FV +      V+ ERLV++     R   K   +  ++E Y  V+  F  +WV+++P ++MAFP ++  +Q   R    +R
Sbjct:  168 RTGGRYTKEWGEIGFQGQDPMTDFRSMGLLALKQLVYYTEHYPVEARRALVHASHPTQWYPFAVTGINITSFVVD------VMRERLVDS-----RLYDKQCDLTQLHEFYCMVFSMFDALWVESNPTDLMAFPAVFKMLQETIRLELTER 307          
BLAST of EWM24403.1 vs. NCBI_GenBank
Match: gi|813112471|ref|XP_012195273.1| (hypothetical protein SPRG_19077 [Saprolegnia parasitica CBS 223.65] >gi|641540459|gb|KDO34241.1| hypothetical protein SPRG_19077 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 124.405 bits (311), Expect = 1.464e-31
Identity = 56/145 (38.62%), Postives = 89/145 (61.38%), Query Frame = 0
Query:   13 REGGREGSVWSEIGFQGRDPATDFRGMGIFGLMQMVSFAESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERLVEAWREGGREGGKGKGMQVVNEVYADVWETFGRVWVDTDPENVMAFPPIWSEVQRRER 157
            R GGR    W EIGFQG DP TDFR MG+  L Q++ +    PE+ARS L+ S HP +W+P+A+TG+N++ F+ EL      + +RL++A     R   K   +  ++E +  V+  F  +WV+++P ++MAFP I++ ++   R
Sbjct:  156 RTGGRLTKEWGEIGFQGTDPMTDFRSMGVLSLHQLLYYTSKYPEEARSALVHSNHPTQWYPFAITGINITNFLVEL------INDRLLDA-----RFYDKDVHVDELHEFFCQVFTMFDALWVESNPTDLMAFPTIFNHLKATIR 289          
The following BLAST results are available for this feature:
BLAST of EWM24403.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105811|gb|EWM24403.1|6.573e-118100.00elmo domain-containing protein 1, partial [Nannoch... [more]
gi|635368894|emb|CCI42928.1|6.081e-3640.40unnamed protein product [Albugo candida][more]
gi|325184167|emb|CCA18625.1|8.241e-3540.40conserved hypothetical protein [Albugo laibachii N... [more]
gi|970664637|gb|KUG01509.1|2.886e-3343.33ELMO domain-containing protein B [Phytophthora nic... [more]
gi|675211159|ref|XP_008914464.1|3.197e-3343.33hypothetical protein PPTG_18253 [Phytophthora para... [more]
gi|567946798|gb|ETK72601.1|3.266e-3343.33hypothetical protein L915_20307 [Phytophthora para... [more]
gi|1173927158|gb|OQR81228.1|1.718e-3237.75hypothetical protein ACHHYP_16638 [Achlya hypogyna... [more]
gi|669152802|ref|XP_008611963.1|2.991e-3238.62hypothetical protein, variant [Saprolegnia diclina... [more]
gi|673023588|ref|XP_008865755.1|1.218e-3139.07hypothetical protein H310_03601 [Aphanomyces invad... [more]
gi|813112471|ref|XP_012195273.1|1.464e-3138.62hypothetical protein SPRG_19077 [Saprolegnia paras... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6285rna6285Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications