EWM24403.1, cds6270 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24403.1 vs. NCBI_GenBank
Match: gi|585105811|gb|EWM24403.1| (elmo domain-containing protein 1, partial [Nannochloropsis gaditana]) HSP 1 Score: 339.732 bits (870), Expect = 6.573e-118 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0 Query: 1 RRGGRKGGREGGREGGREGSVWSEIGFQGRDPATDFRGMGIFGLMQMVSFAESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERLVEAWREGGREGGKGKGMQVVNEVYADVWETFGRVWVDTDPENVMAFPPIWSEVQRRERRRWRQRRGDESWRLLLEV 175 RRGGRKGGREGGREGGREGSVWSEIGFQGRDPATDFRGMGIFGLMQMVSFAESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERLVEAWREGGREGGKGKGMQVVNEVYADVWETFGRVWVDTDPENVMAFPPIWSEVQRRERRRWRQRRGDESWRLLLEV Sbjct: 1 RRGGRKGGREGGREGGREGSVWSEIGFQGRDPATDFRGMGIFGLMQMVSFAESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERLVEAWREGGREGGKGKGMQVVNEVYADVWETFGRVWVDTDPENVMAFPPIWSEVQRRERRRWRQRRGDESWRLLLEV 175
BLAST of EWM24403.1 vs. NCBI_GenBank
Match: gi|635368894|emb|CCI42928.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 135.961 bits (341), Expect = 6.081e-36 Identity = 61/151 (40.40%), Postives = 91/151 (60.26%), Query Frame = 0 Query: 13 REGGREGSVWSEIGFQGRDPATDFRGMGIFGLMQMVSFAESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERLVEAWREGGREGGKGKGMQVVNEVYADVWETFGRVWVDTDPENVMAFPPIWSEVQRRERRRWRQR 163 R GR W EIGFQG DP TDFRGMGI L+Q++ F P +A +LL ES HP W+P++VTG+NV+ FV EL+ E V + A + G G+ ++E Y DV+ +F ++W +++PE+ MAFP ++ ++ R+ + R Sbjct: 155 RAHGRITKEWGEIGFQGVDPMTDFRGMGILSLIQLLYFTSKYPVEASALLTESNHPTHWYPFSVTGINVTAFVIELVQERLVDMKIYQYAETSDPSKHGIDNGLDAMHEFYCDVFTSFNKLWKESNPEDAMAFPSVFQTLKANTRKSLQMR 305
BLAST of EWM24403.1 vs. NCBI_GenBank
Match: gi|325184167|emb|CCA18625.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 133.265 bits (334), Expect = 8.241e-35 Identity = 61/151 (40.40%), Postives = 92/151 (60.93%), Query Frame = 0 Query: 13 REGGREGSVWSEIGFQGRDPATDFRGMGIFGLMQMVSFAESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERLVEAWREGGREGGKGKGMQVVNEVYADVWETFGRVWVDTDPENVMAFPPIWSEVQRRERRRWRQR 163 R GR WSEIGFQG DP TDFRGMG+ L+Q++ F P +A++LL ES HP W+P++VTG+NV+ FV EL+ E V + A G+ ++E Y DV+ +F ++W +++PE+ MAFP I+ ++ R+ ++R Sbjct: 155 RAHGRITKEWSEIGFQGMDPMTDFRGMGVLSLVQLLYFTSKYPVEAQALLTESNHPTHWYPFSVTGINVTAFVIELVQERLVDIKIYQYADISDPSRDVMDNGLDAIHEFYCDVFTSFNKLWKESNPEDAMAFPSIFQALKGDIRKSLQKR 305
BLAST of EWM24403.1 vs. NCBI_GenBank
Match: gi|970664637|gb|KUG01509.1| (ELMO domain-containing protein B [Phytophthora nicotianae]) HSP 1 Score: 128.257 bits (321), Expect = 2.886e-33 Identity = 65/150 (43.33%), Postives = 95/150 (63.33%), Query Frame = 0 Query: 13 REGGREGSVWSEIGFQGRDPATDFRGMGIFGLMQMVSFAESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERL--VEAWREGGREGGKGK--GMQVVNEVYADVWETFGRVWVDTDPENVMAFPPIWSEVQRRERR 158 REGGR W EIGFQG DP +DFR MG+ L+Q+ F +S +A+ L ES HP RW+P+AVTG+NV+ FV EL ++ERL ++ +R G G G++ +++ YA ++ F ++WVDT+P +VMAFP I+ ++ RR Sbjct: 127 REGGRITKEWGEIGFQGTDPMSDFRSMGLLSLVQLNHFTKSYRIEAQRALEESNHPTRWYPFAVTGINVTAFVIEL------IDERLLDIKLYRHAGAGGDDNVDFGLKQLHDFYATIFTRFNKLWVDTNPRDVMAFPSIFQSLKDDIRR 270
BLAST of EWM24403.1 vs. NCBI_GenBank
Match: gi|675211159|ref|XP_008914464.1| (hypothetical protein PPTG_18253 [Phytophthora parasitica INRA-310] >gi|566009316|gb|ETI32227.1| hypothetical protein F443_20895 [Phytophthora parasitica P1569] >gi|568004964|gb|ETL79271.1| hypothetical protein L917_20045 [Phytophthora parasitica] >gi|568034861|gb|ETM32523.1| hypothetical protein L914_20071 [Phytophthora parasitica] >gi|568085350|gb|ETN00258.1| hypothetical protein PPTG_18253 [Phytophthora parasitica INRA-310] >gi|570313010|gb|ETO60958.1| hypothetical protein F444_20913 [Phytophthora parasitica P1976] >gi|570967132|gb|ETP30251.1| hypothetical protein F442_20690 [Phytophthora parasitica P10297]) HSP 1 Score: 129.028 bits (323), Expect = 3.197e-33 Identity = 65/150 (43.33%), Postives = 95/150 (63.33%), Query Frame = 0 Query: 13 REGGREGSVWSEIGFQGRDPATDFRGMGIFGLMQMVSFAESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERL--VEAWREGGREGGKGK--GMQVVNEVYADVWETFGRVWVDTDPENVMAFPPIWSEVQRRERR 158 REGGR W EIGFQG DP +DFR MG+ L+Q+ F +S +A+ L ES HP RW+P+AVTG+NV+ FV EL ++ERL ++ +R G G G++ +++ YA ++ F ++WVDT+P +VMAFP I+ ++ RR Sbjct: 157 REGGRITKEWGEIGFQGTDPMSDFRSMGLLSLVQLNHFTKSYRIEAQRALEESNHPTRWYPFAVTGINVTAFVIEL------IDERLLDIKLYRHAGAGGDDNVDFGLKQLHDFYATIFTRFNKLWVDTNPRDVMAFPSIFQSLKDDIRR 300
BLAST of EWM24403.1 vs. NCBI_GenBank
Match: gi|567946798|gb|ETK72601.1| (hypothetical protein L915_20307 [Phytophthora parasitica] >gi|567975506|gb|ETL26052.1| hypothetical protein L916_20174 [Phytophthora parasitica] >gi|570936833|gb|ETP02090.1| hypothetical protein F441_20755 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 129.028 bits (323), Expect = 3.266e-33 Identity = 65/150 (43.33%), Postives = 95/150 (63.33%), Query Frame = 0 Query: 13 REGGREGSVWSEIGFQGRDPATDFRGMGIFGLMQMVSFAESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERL--VEAWREGGREGGKGK--GMQVVNEVYADVWETFGRVWVDTDPENVMAFPPIWSEVQRRERR 158 REGGR W EIGFQG DP +DFR MG+ L+Q+ F +S +A+ L ES HP RW+P+AVTG+NV+ FV EL ++ERL ++ +R G G G++ +++ YA ++ F ++WVDT+P +VMAFP I+ ++ RR Sbjct: 157 REGGRITKEWGEIGFQGTDPMSDFRSMGLLSLVQLNHFTKSYRIEAQRALEESNHPTRWYPFAVTGINVTAFVIEL------IDERLLDIKLYRHAGAGGDDNVDFGLKQLHDFYATIFTRFNKLWVDTNPRDVMAFPSIFQSLKDDIRR 300
BLAST of EWM24403.1 vs. NCBI_GenBank
Match: gi|1173927158|gb|OQR81228.1| (hypothetical protein ACHHYP_16638 [Achlya hypogyna]) HSP 1 Score: 126.716 bits (317), Expect = 1.718e-32 Identity = 57/151 (37.75%), Postives = 93/151 (61.59%), Query Frame = 0 Query: 13 REGGREGSVWSEIGFQGRDPATDFRGMGIFGLMQMVSFAESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERLVEAWREGGREGGKGKGMQVVNEVYADVWETFGRVWVDTDPENVMAFPPIWSEVQRRERRRWRQR 163 R GGR W EIGFQG DP TDFR MGI L Q+ + ++ E+AR L+ S HP +W+P+AVTG+N++ F++EL+ +D +L+ R+ + K ++ ++E Y V+ F +WV+++P ++MAFP I++ ++ R +R Sbjct: 157 RSGGRHTKEWGEIGFQGTDPMTDFRSMGILSLHQLNYYTKNYAEEARRALVHSNHPTQWYPFAVTGINITNFLYELI-QDRLLDSRMFD----------KDADIKELHEFYCSVFSMFDALWVESNPTDLMAFPTIFNHLKATIRYELLER 296
BLAST of EWM24403.1 vs. NCBI_GenBank
Match: gi|669152802|ref|XP_008611963.1| (hypothetical protein, variant [Saprolegnia diclina VS20] >gi|530736315|gb|EQC34557.1| hypothetical protein, variant [Saprolegnia diclina VS20]) HSP 1 Score: 126.331 bits (316), Expect = 2.991e-32 Identity = 56/145 (38.62%), Postives = 89/145 (61.38%), Query Frame = 0 Query: 13 REGGREGSVWSEIGFQGRDPATDFRGMGIFGLMQMVSFAESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERLVEAWREGGREGGKGKGMQVVNEVYADVWETFGRVWVDTDPENVMAFPPIWSEVQRRER 157 R GGR W EIGFQG DP TDFR MG+ L Q++ + PE+ARS L+ S HP +W+P+A+TG+N++ F+ EL + +RL++A R K + ++E + V+ F +WV+++P ++MAFP I++ ++ R Sbjct: 156 RTGGRHTKEWGEIGFQGTDPMTDFRSMGVLSLHQLLYYTSKYPEEARSALVHSNHPTQWYPFAITGINITNFLVEL------INDRLLDA-----RFYDKDVHIDELHEFFCQVFTMFDALWVESNPTDLMAFPTIFNHLKATIR 289
BLAST of EWM24403.1 vs. NCBI_GenBank
Match: gi|673023588|ref|XP_008865755.1| (hypothetical protein H310_03601 [Aphanomyces invadans] >gi|574478983|gb|ETW05978.1| hypothetical protein H310_03601 [Aphanomyces invadans]) HSP 1 Score: 124.79 bits (312), Expect = 1.218e-31 Identity = 59/151 (39.07%), Postives = 90/151 (59.60%), Query Frame = 0 Query: 13 REGGREGSVWSEIGFQGRDPATDFRGMGIFGLMQMVSFAESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERLVEAWREGGREGGKGKGMQVVNEVYADVWETFGRVWVDTDPENVMAFPPIWSEVQRRERRRWRQR 163 R GGR W EIGFQG+DP TDFR MG+ L Q+V + E P +AR L+ + HP +W+P+AVTG+N++ FV + V+ ERLV++ R K + ++E Y V+ F +WV+++P ++MAFP ++ +Q R +R Sbjct: 168 RTGGRYTKEWGEIGFQGQDPMTDFRSMGLLALKQLVYYTEHYPVEARRALVHASHPTQWYPFAVTGINITSFVVD------VMRERLVDS-----RLYDKQCDLTQLHEFYCMVFSMFDALWVESNPTDLMAFPAVFKMLQETIRLELTER 307
BLAST of EWM24403.1 vs. NCBI_GenBank
Match: gi|813112471|ref|XP_012195273.1| (hypothetical protein SPRG_19077 [Saprolegnia parasitica CBS 223.65] >gi|641540459|gb|KDO34241.1| hypothetical protein SPRG_19077 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 124.405 bits (311), Expect = 1.464e-31 Identity = 56/145 (38.62%), Postives = 89/145 (61.38%), Query Frame = 0 Query: 13 REGGREGSVWSEIGFQGRDPATDFRGMGIFGLMQMVSFAESRPEKARSLLLESEHPRRWFPWAVTGVNVSRFVFELLTEDAVLEERLVEAWREGGREGGKGKGMQVVNEVYADVWETFGRVWVDTDPENVMAFPPIWSEVQRRER 157 R GGR W EIGFQG DP TDFR MG+ L Q++ + PE+ARS L+ S HP +W+P+A+TG+N++ F+ EL + +RL++A R K + ++E + V+ F +WV+++P ++MAFP I++ ++ R Sbjct: 156 RTGGRLTKEWGEIGFQGTDPMTDFRSMGVLSLHQLLYYTSKYPEEARSALVHSNHPTQWYPFAITGINITNFLVEL------INDRLLDA-----RFYDKDVHVDELHEFFCQVFTMFDALWVESNPTDLMAFPTIFNHLKATIR 289 The following BLAST results are available for this feature:
BLAST of EWM24403.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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