rna6282, rna6282 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6282
Unique Name	rna6282
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1751
Alignment location	CM002468.1:166314..167409 -

Link to JBrowse

Properties


Property Name	Value
Product	potassium voltage-gated channel subfamily d member 2
Orig transcript id	gnl\|cribi\|Naga_101225g2.10244.mrna
Orig protein id	gnl\|cribi\|Naga_101225g2.10244
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:166314..167409 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101225g2	gene6074	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6282	rna6282-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24405.1	cds6267	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:166314..167409-
coding sequence from alignment at CM002468.1:166314..167409-

mRNA sequence

>rna6282 ID=rna6282|Name=rna6282|organism=Nannochloropsis gaditana|type=mRNA|length=1751bp
AGTTCCCGGACGGAGAGTACATTCGAAAGAACGTTCATGGTGGGGGCACA
GAGCAGTCGCCGTTCACCTCCATTCCCGTTGCGGCCTATTGGGTCATCAT
GACGGCCACCACCGTGGGATTCGGAGATTTCTACCCCACCTCCACACTGG
GTCGCTTCGTGGCCATCGTCGCTGCCTACACGGGCATCGTCGGCATCGCC
CTCCCCTCCACCATCATCGGCAAGAGCTTCATCGACGTCTACTTCCGGGT
AGGTTCCCCCCCCCTTGCATCCCTTGTGTGCTTGTGTGGGGGGAGAGTCC
TGCTGCTTGCTGTTGTCCTTTCTACGCGTTGATTTGCGCTCTCTCTCGGC
TTTATTCGGGGGGAGGGGTGTGTGGGTGCCGGAGGTTTCTTGGCGACTTT
AGGTGCTTCTCGAACCCAATCACTTCTCCGGGTCCGGGGCAGAGCCTTTG
GGGGCACTATAGACCTCCCTTTGGTGTCCCTGTTCATGTCTCCTCCACCG
ACGCCCACCTCGGACCCCGTGTCTTCCAGGTGTTGGAGGAGCGAAAAAAG
GAGGAACAGCTCCTCAAGGCGGAGAGAGAGCGGGAAGAAGAGGCCAGGAA
AGCGAGGGGGGACACGGGCACGGGCTTGATGGCATTGCTCTGTTGTCGGC
GGCGACGGCGGGCCCCCGCGGTGGTGCCAGGGATGGAGGGGGGGAGGGAG
GGAGGGAAGGAGGGAGGGAAGGAGGGGGGGAAGGAGGGGGGAAGACTTGT
CGGGGGATTAAAAACGGAGGCAGATTCCACGCCCTCCCAGTCCCCCCGAC
GGCCCTGGCGGGATTTCTACATCGAGCGGGAGAACACGGTGGCGCAGCGG
GTGCTACGGAAGGAGAAGGAATTGGCGGAGGAGAAAGCGAAGGAGGACGC
GCTGGTGCGGGAGATCGAAGCCCAAGTCTGGGCCCAAGAGCAGGAGGAAC
GGGCACAGGTCGGGGCCGAGGGCGAGGAAGAGGGCCGGGCCCGGTGCGAC
GGGAAAGAGGGAGGGAAATGCCAGGGGTACACGCTGGCCGCTTCGGTCTT
GGAAGGGCGGGGGAGCAACGTACCTTCGGCCCATTTGATGACCTGCATCC
ACCAAGCGAATCGGGGGGGGGCCTCAGCCTCGGCGGCTTTACAGGCCATT
CCCTTGGCGAAGAAGGTACGGAAACAACAGCAGCAGATAGAGAAGCTCGC
GCACATAGTGGGCGATCAATTGCACCATATCCATGCCCTTTCGGAAGCGT
TGACCGAGATGGAACGGGCGACGGTCTATCTGATGAGTCGCTTCGACGAA
CTTGAAAGCGATTGAGGCCCGGCCCATATCCAGGCTGCAAGGAGAGCGGC
CCATATCGTGCGATCCAGGCTGCAAGGAGAGCGTGCGGTGCCAAGTTGAA
CGAAAAGCAAAAGCCGCACGAGCCCGTGACTGGAAGAGGAGTACCGCACA
TATAGATAAATCTATATATATATATGTATACGCCAAATGTAAATTTTGGT
CCGGAAGGACAATAGGTTTGGCACTAAGTGCAAAACACGGCAATAAACGA
GGCGAAAGTTGGGGTGGGGGCGGGAAAAGGGATTCTTCAACGAGTCGGTA
GTAAGACGCTGAAACCAATGCCGCCAACTCGATTTAAAAGTTCACGCCTT
CGTAGATGATTGGACGAGCATGTGAAAGTCGATGGAGCAATGAAAACCCA
ACGTTTTGTTGTTTTCTTTGGTAAGCAATGTCAATCCATTGGATCGTGTC
T

protein sequence of rna6282

>rna6282-protein ID=rna6282-protein|Name=rna6282|organism=Nannochloropsis gaditana|type=polypeptide|length=312bp
MPVPHVPRNSNSSYHRAPPRQTSSDQRPSFSDRPPATVHHQLSRRIITRK
DDNYGESNLRRLVFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMP
RFQRQPGHCPDPVCLPGPDSACPESICPPTQIPALFWVEAVTVGIFTIDY
VLRLACVHAVPERLINPQHYLHQVGGPRALQEPSGLTKTLSFTIQWMNII
DLLSFLPFYLGLKLDFGEENFVFLRLLRVMRVIRIFRLGRYTDGSTVVRE
TLRASSAAVGLMAFFMIVLTLFFAAISGLSIPPSLFSSLPPSLFSSHPFA
LTFFSGSHPVSH

mRNA from alignment at CM002468.1:166314..167409-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6282 ID=rna6282|Name=rna6282|organism=Nannochloropsis gaditana|type=mRNA|length=1096bp|location=Sequence derived from alignment at CM002468.1:166314..167409- (Nannochloropsis gaditana)
ATGCCTGTCCCCCACGTACCCAGAAATTCCAACTCGAGTTACCACCGGGC
CCCTCCCAGACAAACCTCCAGCGACCAACGTCCCTCCTTCTCTGACCGTC
CACCGGCTACAGTCCATCACCAATTGTCTAGGCGTATCATTACCCGAAAG
GATGACAACTACGGGGAGAGCAACCTGCGTCGGCTGGTGTTTTTGACCCT
CCACCACCCGAATTTCAGCCCCTTGGCCCGCCTTCTCTCCGCTTTAATGG
GCCTGACCATTTTCATCACCTGCCTTGGCTTCGTCCTCTCCACCATGCCC
CGATTCCAACGCCAGCCGGGGCATTGCCCCGACCCTGTGTGTCTTCCCGG
GCCGGACTCGGCGTGTCCGGAGTCTATCTGCCCCCCCACGCAGATTCCCG
CCCTTTTTTGGGTGGAAGCCGTGACTGTGGGCATCTTCACGATTGACTAC
GTCCTCCGCCTTGCCTGCGTGCACGCGGTACCGGAGCGTCTGATCAATCC
GCAGCACTATTTGCATCAAGTGGGGGGGCCTCGAGCCCTCCAGGAGCCCT
CCGGCCTGACCAAGACCCTCTCTTTCACCATCCAGTGGATGAACATCATT
GATTTGCTTTCCTTTTTGCCTTTTTATCTGGGATTGAAGCTTGACTTTGG
TGAGGAAAACTTCGTCTTCCTCCGGCTCCTGCGCGTGATGGTGAGAGGGA
AGGGAGGGCGGAGGCGGGAGGGAGGGAAGGACGTGCATTTATGTTTCCCG
CAATGTTTCTCCCGTTCTTATTCTGTTAATTATTCAATTCCTCTGTGGCA
CAGCGCGTGATTCGAATTTTCAGACTCGGTCGTTACACAGACGGAAGCAC
GGTGGTGCGCGAAACCCTTCGAGCCAGCTCGGCGGCCGTGGGACTGATGG
CTTTCTTTATGATCGTCCTGACGCTTTTCTTCGCCGCCATTGTCTACTAC
TCTGAGATGGGTCGTTTTATGGTGACGCCGGTAAGAGCGGTCTCTCCATC
CCTCCCTCCCTCTTTTCCTCCCTCCCTCCCTCCCTCTTTTCCTCCCACCC
CTTCGCCCTCACGTTTTTCTCGGGTTCCCATCCCGTGTCTCACTGA

Coding sequence (CDS) from alignment at CM002468.1:166314..167409-

>rna6282 ID=rna6282|Name=rna6282|organism=Nannochloropsis gaditana|type=CDS|length=2817bp|location=Sequence derived from alignment at CM002468.1:166314..167409- (Nannochloropsis gaditana)
AGCGGTCTCTCCATCCCTCCCTCCCTCTTTTCCTCCCTCCCTCCCTCCCT
CTTTTCCTCCCACCCCTTCGCCCTCACGTTTTTCTCGGGTTCCCATCCCG
TGTCTCACTGACGCGTGATTCGAATTTTCAGACTCGGTCGTTACACAGAC
GGAAGCACGGTGGTGCGCGAAACCCTTCGAGCCAGCTCGGCGGCCGTGGG
ACTGATGGCTTTCTTTATGATCGTCCTGACGCTTTTCTTCGCCGCCATTA
TGCCTGTCCCCCACGTACCCAGAAATTCCAACTCGAGTTACCACCGGGCC
CCTCCCAGACAAACCTCCAGCGACCAACGTCCCTCCTTCTCTGACCGTCC
ACCGGCTACAGTCCATCACCAATTGTCTAGGCGTATCATTACCCGAAAGG
ATGACAACTACGGGGAGAGCAACCTGCGTCGGCTGGTGTTTTTGACCCTC
CACCACCCGAATTTCAGCCCCTTGGCCCGCCTTCTCTCCGCTTTAATGGG
CCTGACCATTTTCATCACCTGCCTTGGCTTCGTCCTCTCCACCATGCCCC
GATTCCAACGCCAGCCGGGGCATTGCCCCGACCCTGTGTGTCTTCCCGGG
CCGGACTCGGCGTGTCCGGAGTCTATCTGCCCCCCCACGCAGATTCCCGC
CCTTTTTTGGGTGGAAGCCGTGACTGTGGGCATCTTCACGATTGACTACG
TCCTCCGCCTTGCCTGCGTGCACGCGGTACCGGAGCGTCTGATCAATCCG
CAGCACTATTTGCATCAAGTGGGGGGGCCTCGAGCCCTCCAGGAGCCCTC
CGGCCTGACCAAGACCCTCTCTTTCACCATCCAGTGGATGAACATCATTG
ATTTGCTTTCCTTTTTGCCTTTTTATCTGGGATTGAAGCTTGACTTTGGT
GAGGAAAACTTCGTCTTCCTCCGGCTCCTGCGCGTGATGAGCGGTCTCTC
CATCCCTCCCTCCCTCTTTTCCTCCCTCCCTCCCTCCCTCTTTTCCTCCC
ACCCCTTCGCCCTCACGTTTTTCTCGGGTTCCCATCCCGTGTCTCACTGA
CGCGTGATTCGAATTTTCAGACTCGGTCGTTACACAGACGGAAGCACGGT
GGTGCGCGAAACCCTTCGAGCCAGCTCGGCGGCCGTGGGACTGATGGCTT
TCTTTATGATCGTCCTGACGCTTTTCTTCGCCGCCATTATGCCTGTCCCC
CACGTACCCAGAAATTCCAACTCGAGTTACCACCGGGCCCCTCCCAGACA
AACCTCCAGCGACCAACGTCCCTCCTTCTCTGACCGTCCACCGGCTACAG
TCCATCACCAATTGTCTAGGCGTATCATTACCCGAAAGGATGACAACTAC
GGGGAGAGCAACCTGCGTCGGCTGGTGTTTTTGACCCTCCACCACCCGAA
TTTCAGCCCCTTGGCCCGCCTTCTCTCCGCTTTAATGGGCCTGACCATTT
TCATCACCTGCCTTGGCTTCGTCCTCTCCACCATGCCCCGATTCCAACGC
CAGCCGGGGCATTGCCCCGACCCTGTGTGTCTTCCCGGGCCGGACTCGGC
GTGTCCGGAGTCTATCTGCCCCCCCACGCAGATTCCCGCCCTTTTTTGGG
TGGAAGCCGTGACTGTGGGCATCTTCACGATTGACTACGTCCTCCGCCTT
GCCTGCGTGCACGCGGTACCGGAGCGTCTGATCAATCCGCAGCACTATTT
GCATCAAGTGGGGGGGCCTCGAGCCCTCCAGGAGCCCTCCGGCCTGACCA
AGACCCTCTCTTTCACCATCCAGTGGATGAACATCATTGATTTGCTTTCC
TTTTTGCCTTTTTATCTGGGATTGAAGCTTGACTTTGGTGAGGAAAACTT
CGTCTTCCTCCGGCTCCTGCGCGTGATGAGCGGTCTCTCCATCCCTCCCT
CCCTCTTTTCCTCCCTCCCTCCCTCCCTCTTTTCCTCCCACCCCTTCGCC
CTCACGTTTTTCTCGGGTTCCCATCCCGTGTCTCACTGACGCGTGATTCG
AATTTTCAGACTCGGTCGTTACACAGACGGAAGCACGGTGGTGCGCGAAA
CCCTTCGAGCCAGCTCGGCGGCCGTGGGACTGATGGCTTTCTTTATGATC
GTCCTGACGCTTTTCTTCGCCGCCATTATGCCTGTCCCCCACGTACCCAG
AAATTCCAACTCGAGTTACCACCGGGCCCCTCCCAGACAAACCTCCAGCG
ACCAACGTCCCTCCTTCTCTGACCGTCCACCGGCTACAGTCCATCACCAA
TTGTCTAGGCGTATCATTACCCGAAAGGATGACAACTACGGGGAGAGCAA
CCTGCGTCGGCTGGTGTTTTTGACCCTCCACCACCCGAATTTCAGCCCCT
TGGCCCGCCTTCTCTCCGCTTTAATGGGCCTGACCATTTTCATCACCTGC
CTTGGCTTCGTCCTCTCCACCATGCCCCGATTCCAACGCCAGCCGGGGCA
TTGCCCCGACCCTGTGTGTCTTCCCGGGCCGGACTCGGCGTGTCCGGAGT
CTATCTGCCCCCCCACGCAGATTCCCGCCCTTTTTTGGGTGGAAGCCGTG
ACTGTGGGCATCTTCACGATTGACTACGTCCTCCGCCTTGCCTGCGTGCA
CGCGGTACCGGAGCGTCTGATCAATCCGCAGCACTATTTGCATCAAGTGG
GGGGGCCTCGAGCCCTCCAGGAGCCCTCCGGCCTGACCAAGACCCTCTCT
TTCACCATCCAGTGGATGAACATCATTGATTTGCTTTCCTTTTTGCCTTT
TTATCTGGGATTGAAGCTTGACTTTGGTGAGGAAAACTTCGTCTTCCTCC
GGCTCCTGCGCGTGATG

Synonyms

Publications