EWM24405.1, cds6267 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24405.1 vs. NCBI_GenBank
Match: gi|585105815|gb|EWM24405.1| (potassium voltage-gated channel subfamily d member 2 [Nannochloropsis gaditana]) HSP 1 Score: 629.017 bits (1621), Expect = 0.000e+0 Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 0 Query: 1 MPVPHVPRNSNSSYHRAPPRQTSSDQRPSFSDRPPATVHHQLSRRIITRKDDNYGESNLRRLVFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRFQRQPGHCPDPVCLPGPDSACPESICPPTQIPALFWVEAVTVGIFTIDYVLRLACVHAVPERLINPQHYLHQVGGPRALQEPSGLTKTLSFTIQWMNIIDLLSFLPFYLGLKLDFGEENFVFLRLLRVMRVIRIFRLGRYTDGSTVVRETLRASSAAVGLMAFFMIVLTLFFAAISGLSIPPSLFSSLPPSLFSSHPFALTFFSGSHPVSH 312 MPVPHVPRNSNSSYHRAPPRQTSSDQRPSFSDRPPATVHHQLSRRIITRKDDNYGESNLRRLVFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRFQRQPGHCPDPVCLPGPDSACPESICPPTQIPALFWVEAVTVGIFTIDYVLRLACVHAVPERLINPQHYLHQVGGPRALQEPSGLTKTLSFTIQWMNIIDLLSFLPFYLGLKLDFGEENFVFLRLLRVMRVIRIFRLGRYTDGSTVVRETLRASSAAVGLMAFFMIVLTLFFAAISGLSIPPSLFSSLPPSLFSSHPFALTFFSGSHPVSH Sbjct: 1 MPVPHVPRNSNSSYHRAPPRQTSSDQRPSFSDRPPATVHHQLSRRIITRKDDNYGESNLRRLVFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRFQRQPGHCPDPVCLPGPDSACPESICPPTQIPALFWVEAVTVGIFTIDYVLRLACVHAVPERLINPQHYLHQVGGPRALQEPSGLTKTLSFTIQWMNIIDLLSFLPFYLGLKLDFGEENFVFLRLLRVMRVIRIFRLGRYTDGSTVVRETLRASSAAVGLMAFFMIVLTLFFAAISGLSIPPSLFSSLPPSLFSSHPFALTFFSGSHPVSH 312
BLAST of EWM24405.1 vs. NCBI_GenBank
Match: gi|585110761|gb|EWM28383.1| (expulsion defective family member (exp-2) [Nannochloropsis gaditana] >gi|585110763|gb|EWM28385.1| expulsion defective family member (exp-2) [Nannochloropsis gaditana]) HSP 1 Score: 150.214 bits (378), Expect = 5.318e-39 Identity = 87/228 (38.16%), Postives = 119/228 (52.19%), Query Frame = 0 Query: 51 DDNYGESNLRRLVFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRFQRQPGHCPDPVCLPG-PDSACPESICPPTQIPALFWVEAVTVGIFTIDYVLRLACVHAVPERLINPQHYLHQVGGPRALQEPSGLTKTLSFTIQWMNIIDLLSFLPFYLGLKLDFGEENFVFLRLLRVMRVIRIFRLGRYTDGSTVVRETLRASSAAVGLMAFFMIVLTLFFAAIS 277 DD E R +VF+T H +S A L +M I+C+ FVLSTMPRF P C P+C P P + C IC P L E VT+ +F DY++RL VHAVP+RLI R + +PS L KT + + +IDLL LP+ L + N + RLLR+ RV+R+ +L RY DG +V TL+ S ++ L+ F IVLT A++ Sbjct: 21 DDWRAEHTWRTMVFMTADHMYYSYYAWLYGTVMCTVTGISCIAFVLSTMPRFNYTPSQCSRPICRPSDPGAECDRVICYPRPHHYLIQTELVTLILFIFDYLVRLITVHAVPQRLIYWDGRRINEDHSRGVAQPSPLEKTFRYAVHADQVIDLLVILPYLLNYVI--STMNIMHWRLLRITRVLRVLKLSRYFDGGELVWNTLKNSGPSLMLLTLFTIVLTFIMGALA 246
BLAST of EWM24405.1 vs. NCBI_GenBank
Match: gi|585110762|gb|EWM28384.1| (expulsion defective family member (exp-2) [Nannochloropsis gaditana]) HSP 1 Score: 150.984 bits (380), Expect = 1.017e-38 Identity = 87/228 (38.16%), Postives = 119/228 (52.19%), Query Frame = 0 Query: 51 DDNYGESNLRRLVFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRFQRQPGHCPDPVCLPG-PDSACPESICPPTQIPALFWVEAVTVGIFTIDYVLRLACVHAVPERLINPQHYLHQVGGPRALQEPSGLTKTLSFTIQWMNIIDLLSFLPFYLGLKLDFGEENFVFLRLLRVMRVIRIFRLGRYTDGSTVVRETLRASSAAVGLMAFFMIVLTLFFAAIS 277 DD E R +VF+T H +S A L +M I+C+ FVLSTMPRF P C P+C P P + C IC P L E VT+ +F DY++RL VHAVP+RLI R + +PS L KT + + +IDLL LP+ L + N + RLLR+ RV+R+ +L RY DG +V TL+ S ++ L+ F IVLT A++ Sbjct: 21 DDWRAEHTWRTMVFMTADHMYYSYYAWLYGTVMCTVTGISCIAFVLSTMPRFNYTPSQCSRPICRPSDPGAECDRVICYPRPHHYLIQTELVTLILFIFDYLVRLITVHAVPQRLIYWDGRRINEDHSRGVAQPSPLEKTFRYAVHADQVIDLLVILPYLLNYVI--STMNIMHWRLLRITRVLRVLKLSRYFDGGELVWNTLKNSGPSLMLLTLFTIVLTFIMGALA 246
BLAST of EWM24405.1 vs. NCBI_GenBank
Match: gi|585109280|gb|EWM27103.1| (Ion transport [Nannochloropsis gaditana]) HSP 1 Score: 135.576 bits (340), Expect = 3.554e-32 Identity = 80/243 (32.92%), Postives = 135/243 (55.56%), Query Frame = 0 Query: 43 SRRIITRKDDNYGE--SNLRRLVFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRFQRQPGHCPDPVCLPGPDSACPESICPPTQIPALFWVEAVTVGIFTIDYVLRLACVHAVPERLINPQHYLHQVGGPRALQEPSGL------TKTLSFTIQWMNIIDLLSFLPFYLGLKLDFGEENFVFLRLLRVMRVIRIFRLG-RYTDGSTVVRETLRASSAAVGLMAFFMIVLTLFFAAI 276 ++++++ D + + + LR L+F+TL HP S LA +S + I + + F++ T+P R P C DPVC PGP + C E +C P + ++ +E T+ IFTIDY+LR+ CV AVP L+ P+ + + G L++ S KT + + +NIID++S +PFY+ L + +R+ R +R + IF+LG R+ + ++ TLRAS A+ + F VL + F ++ Sbjct: 38 AKQVLSYSDSTFSDQLNALRVLIFVTLEHPRSSRLAWYISIFLVACILLNAISFMVGTIPSTLRHPTTCADPVCEPGPTTFCTEVVCRPRENRIIWHLELWTIVIFTIDYLLRVFCVPAVPVDLVFPRSLEYTIDG--RLKDRSNYYRMDPCKKTTKYMLSGLNIIDVISIVPFYVYLLAPYPA-----IRVFRFLRFLLIFKLGRRFREAGAIISRTLRASLPALLIFVFLTTVLAIVFGSM 273
BLAST of EWM24405.1 vs. NCBI_GenBank
Match: gi|1129189903|gb|OLP95259.1| (Potassium voltage-gated channel subfamily A member 7 [Symbiodinium microadriaticum]) HSP 1 Score: 94.7449 bits (234), Expect = 6.736e-18 Identity = 61/183 (33.33%), Postives = 90/183 (49.18%), Query Frame = 0 Query: 57 SNLRRLVFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRFQRQPGHCPDPVCLPGPDSACPESICPPTQIPALFWVEAVTVGIFTIDYVLRLACVHAVPERLINPQHYLHQVGGPRALQEPSGLTKTLSFTIQWMNIIDLLSFLPFYLGLK-LDFGEENFVFLRLLRVMRVIRIFRL 238 LRR VF L+ P+ S +A+ S + I +T + +L ++P P C DS C P A F +E V + IFT+DYVLR+ HA+ R + Q+ VG +E + + IQW+N++DL + +PFYL L L G ++RV+R+IRIFRL Sbjct: 692 EGLRRTVFKVLNDPSSSEVAKWASYFITAVILVTTVSMLLESIPELSHVPDAC---------DSLVTVENCRPQPSQAFFQIELVCIIIFTVDYVLRICTAHAMTARELGVQY----VGE----KEVPAWKASWRYVIQWLNLVDLFAIVPFYLELAGLQLGSSA-----VIRVIRLIRIFRL 852
BLAST of EWM24405.1 vs. NCBI_GenBank
Match: gi|873223725|emb|CEM28094.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 92.8189 bits (229), Expect = 2.567e-17 Identity = 68/242 (28.10%), Postives = 112/242 (46.28%), Query Frame = 0 Query: 43 SRRIITRKDDNYGESNLRRL------VFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRFQRQPGHCPDPVCLPGPDSACPESICPPTQIPALFW--VEAVTVGIFTIDYVLRLACVHAVPERLINPQHYLHQVGGPRALQEPSGLTKTLSFTIQWMNIIDLLSFLPFYLGLKLD-FGEENFVFLRLLRVMRVIRIFRLGRYTDGSTVVRETLRASSAAVGLMAFFMIVLTLFFAA 275 +R + DN + L R+ ++L L P+ S +A ++S + L I ++ F+L TMP +P W +E TVG+FT+++VLRL+ V+ VPE Y ++ F WMN DLL+F P+Y+ L L F F LR++R++RV RIF+L RY+ G ++ E L+ S A+ ++ FF+ + + F++ Sbjct: 61 TRELTAELQDNKWQQFLLRVEGAKKRIYLLLEVPDSSQVATVISIAIMLLIAVSVTAFMLETMPELN--------------------------DVVPLRVWEAIEGTTVGLFTLEFVLRLSVVNIVPE-------YTLKI-----------------FLTSWMNWFDLLAFAPYYVRLMLSSFALGGFRVLRVVRLIRVFRIFKLSRYSVGLRLMGEGLKRSIQALWILVFFLAIGIILFSS 252
BLAST of EWM24405.1 vs. NCBI_GenBank
Match: gi|551655720|ref|XP_005830634.1| (hypothetical protein GUITHDRAFT_110453 [Guillardia theta CCMP2712] >gi|428174760|gb|EKX43654.1| hypothetical protein GUITHDRAFT_110453 [Guillardia theta CCMP2712]) HSP 1 Score: 92.4337 bits (228), Expect = 3.249e-17 Identity = 79/282 (28.01%), Postives = 129/282 (45.74%), Query Frame = 0 Query: 8 RNSNSSYHRAPPRQTSSDQRPSFSDRPPATVHHQLSRRIITRKDDNYGESNLRRLVFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRFQRQPGHCPDPVCLPGPDSACPESICPPTQIPALFWVEAVTVGIFTIDYVLR-LACVHAVPERLINPQHYLHQVG--------GPRALQEPSGLTKTL---SFTIQWMNIIDLLSFLPFYLGLKLDFGEENFVFLRLLRVMRVIRIFRLGRYTDGSTVVRETLRASSAAVGLMAFFM-IVLTLFFAAI 276 RNS +S A R+ S P A++ +LS V+ TL HP+ S LA + ++ +TI I+C F+ T+P S+C + ++ V + IFTIDYVLR + C E L P+ + + + +P LTK L SF ++ N+IDLLS LPFY+ +L G ++++++ RV R+ R+ +Y+ GS ++ T+R S +G++ FF+ I +TLF +A+ Sbjct: 7 RNSKASRSEAEERKGLRKTSSYISVSPDASILDRLSGH-----------------VWNTLEHPSSSRLASVWMIVLIVTIIISCTSFIAETIP------------------------SLCCGSTDGVWHQIDIVCIAIFTIDYVLRVITCPDIYVEYLPAPRLFGYNKAVTPEGDQVSDSTVNKPVWLTKLLARVSFVLRIANMIDLLSILPFYI--RLLAGSRRSGAIQVIKIGRVFRLLRIIKYSSGSELLARTIRTSIEPLGMLIFFVSIAVTLFSSAM 245
BLAST of EWM24405.1 vs. NCBI_GenBank
Match: gi|425892106|gb|AFY09705.1| (potassium channel, partial [Nematostella vectensis]) HSP 1 Score: 89.3521 bits (220), Expect = 3.109e-16 Identity = 70/245 (28.57%), Postives = 122/245 (49.80%), Query Frame = 0 Query: 58 NLRRLVFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRF--QRQPGHCPDPVCLPGPDSAC--PESICPPTQIPALFWVEAVTVGIFTIDYVLRLACVHAVPERLINPQHYLHQVGGPRALQEPSGLTKTLSFTIQWMNIIDLLSFLPFYLGLKL-DFGEENFVFLRLLRVMRVIRIFRLGRYTDGSTVVRETLRASSAAVGLMAFFMIVLTLFFAA---ISGLSIPPSLFSSLPPSLF 294 +L+R ++ +P+ S AR+L+ I I+ + F + T+P F + P P LPG +S PE P + A +E + + FT++YV+RL L +PQ L F ++N+IDL++ LP+Y+ L + D + LR++R++RV RIF+L R++ G V+ TLRASS + ++ FF+++ + F++ + S FSS+P + + Sbjct: 159 HLQRRIWELFEYPDSSMGARVLAVWSVSVILISIVVFCIETLPTFRCKTSPDGNGCPKLLPGTNSTADHPE---PVEKSSAWLALEILCIAWFTLEYVVRL---------LSSPQKLL--------------------FVRSFLNVIDLMAILPYYITLPMKDLRITSLAVLRVIRLVRVFRIFKLSRHSRGLQVLGHTLRASSRELAMLIFFLLISVVLFSSAVYYAEEEEAASKFSSIPDAFW 371
BLAST of EWM24405.1 vs. NCBI_GenBank
Match: gi|1079805247|ref|XP_018527683.1| (PREDICTED: potassium voltage-gated channel subfamily A member 7-like [Lates calcarifer]) HSP 1 Score: 88.5817 bits (218), Expect = 5.551e-16 Identity = 62/278 (22.30%), Postives = 127/278 (45.68%), Query Frame = 0 Query: 40 HQLSRRIITRKDDNYG----------ESNLRRLVFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRFQRQPGHCPDPVCLPGPDSACPESICPPTQIP---ALFWVEAVTVGIFTIDYVLRLACVHAVPERLINPQHYLHQVGGPRALQEPSGLTKTLSFTIQWMNIIDLLSFLPFYLGLKLDFGEEN-------FVFLRLLRVMRVIRIFRLGRYTDGSTVVRETLRASSAAVGLMAFFMIVLTLFFAA---ISGLSIPPSLFSSLPPSLF 294 ++L II R ++ G ++L+R +++ +P S AR+++ + + I I+ L F L T+P F+++ +P P A + PP P F VE + + F+ + ++R C + P H+ V MN ID + +P+++ L + ++ +R++R++RV RIF+L R++ G ++ +TL+AS + L+ FF+ + + F++ + + P + F+S+P + + Sbjct: 153 YELGEEIIDRFKEDEGFPKEEERPLPANDLQRRLWMLFEYPESSSGARIIAIISVMVIVISILIFCLETLPEFRQEKELREQYTTIPHPTIANETILIPPGFTPFQDPFFIVETICICWFSFELIMRFICAPSKP-------HFFKDV----------------------MNTIDFFAIIPYFVTLGTELAKDKGAQPSVSLALIRVIRLVRVFRIFKLSRHSKGLQILGQTLKASLRELALLIFFLFIGVIIFSSAVYFAEVDSPDTAFTSIPEAFW 401
BLAST of EWM24405.1 vs. NCBI_GenBank
Match: gi|156369500|ref|XP_001628014.1| (predicted protein [Nematostella vectensis] >gi|156214979|gb|EDO35951.1| predicted protein, partial [Nematostella vectensis]) HSP 1 Score: 87.4261 bits (215), Expect = 8.454e-16 Identity = 72/245 (29.39%), Postives = 124/245 (50.61%), Query Frame = 0 Query: 58 NLRRLVFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRF--QRQPGHCPDPVCLPGPDSAC--PESICPPTQIPALFWVEAVTVGIFTIDYVLRLACVHAVPERLINPQHYLHQVGGPRALQEPSGLTKTLSFTIQWMNIIDLLSFLPFYLGLKL-DFGEENFVFLRLLRVMRVIRIFRLGRYTDGSTVVRETLRASSAAVGLMAFFMIV-LTLFFAAI--SGLSIPPSLFSSLPPSLF 294 +L+R ++ +P+ S AR+L+ I I+ + F + T+P F + P P LPG +S PE P + A +E + + FT++YV+RL L +PQ L F ++N+IDL++ LP+Y+ L + D + LR++R++RV RIF+L R++ G V+ TLRASS + ++ FF+++ + LF +A+ + S FSS+P + + Sbjct: 112 HLQRRIWELFEYPDSSMGARVLAVWSVSVILISIVVFCIETLPTFRCKTSPDGNGCPKLLPGTNSTADHPE---PVEKSSAWLALEILCIAWFTLEYVVRL---------LSSPQKLL--------------------FVRSFLNVIDLMAILPYYITLPMKDLRITSLAVLRVIRLVRVFRIFKLSRHSRGLQVLGHTLRASSRELAMLIFFLLISVVLFSSAVYYAEEEEAASKFSSIPDAFW 324 The following BLAST results are available for this feature:
BLAST of EWM24405.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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