EWM24405.1, cds6267 (CDS) Nannochloropsis gaditana

Overview
NameEWM24405.1
Unique Namecds6267
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:166720..167409 -
Alignment locationCM002468.1:166469..166606 -
Alignment locationCM002468.1:166314..166424 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24405.1
Productpotassium voltage-gated channel subfamily d member 2
Orig transcript idgnl|cribi|Naga_101225g2.10244.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:166720..167409 -
CM002468.1supercontigCM002468.1:166469..166606 -
CM002468.1supercontigCM002468.1:166314..166424 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005886plasma membrane
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006811ion transport
GO:0055085transmembrane transport
GO:0006813potassium ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0005249voltage-gated potassium channel activity
GO:0005216ion channel activity
Vocabulary: INTERPRO
TermDefinition
IPR028325VG_K_chnl
IPR005821Ion_trans_dom
IPR003091K_chnl
Homology
BLAST of EWM24405.1 vs. NCBI_GenBank
Match: gi|585105815|gb|EWM24405.1| (potassium voltage-gated channel subfamily d member 2 [Nannochloropsis gaditana])

HSP 1 Score: 629.017 bits (1621), Expect = 0.000e+0
Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 0
Query:    1 MPVPHVPRNSNSSYHRAPPRQTSSDQRPSFSDRPPATVHHQLSRRIITRKDDNYGESNLRRLVFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRFQRQPGHCPDPVCLPGPDSACPESICPPTQIPALFWVEAVTVGIFTIDYVLRLACVHAVPERLINPQHYLHQVGGPRALQEPSGLTKTLSFTIQWMNIIDLLSFLPFYLGLKLDFGEENFVFLRLLRVMRVIRIFRLGRYTDGSTVVRETLRASSAAVGLMAFFMIVLTLFFAAISGLSIPPSLFSSLPPSLFSSHPFALTFFSGSHPVSH 312
            MPVPHVPRNSNSSYHRAPPRQTSSDQRPSFSDRPPATVHHQLSRRIITRKDDNYGESNLRRLVFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRFQRQPGHCPDPVCLPGPDSACPESICPPTQIPALFWVEAVTVGIFTIDYVLRLACVHAVPERLINPQHYLHQVGGPRALQEPSGLTKTLSFTIQWMNIIDLLSFLPFYLGLKLDFGEENFVFLRLLRVMRVIRIFRLGRYTDGSTVVRETLRASSAAVGLMAFFMIVLTLFFAAISGLSIPPSLFSSLPPSLFSSHPFALTFFSGSHPVSH
Sbjct:    1 MPVPHVPRNSNSSYHRAPPRQTSSDQRPSFSDRPPATVHHQLSRRIITRKDDNYGESNLRRLVFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRFQRQPGHCPDPVCLPGPDSACPESICPPTQIPALFWVEAVTVGIFTIDYVLRLACVHAVPERLINPQHYLHQVGGPRALQEPSGLTKTLSFTIQWMNIIDLLSFLPFYLGLKLDFGEENFVFLRLLRVMRVIRIFRLGRYTDGSTVVRETLRASSAAVGLMAFFMIVLTLFFAAISGLSIPPSLFSSLPPSLFSSHPFALTFFSGSHPVSH 312          
BLAST of EWM24405.1 vs. NCBI_GenBank
Match: gi|585110761|gb|EWM28383.1| (expulsion defective family member (exp-2) [Nannochloropsis gaditana] >gi|585110763|gb|EWM28385.1| expulsion defective family member (exp-2) [Nannochloropsis gaditana])

HSP 1 Score: 150.214 bits (378), Expect = 5.318e-39
Identity = 87/228 (38.16%), Postives = 119/228 (52.19%), Query Frame = 0
Query:   51 DDNYGESNLRRLVFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRFQRQPGHCPDPVCLPG-PDSACPESICPPTQIPALFWVEAVTVGIFTIDYVLRLACVHAVPERLINPQHYLHQVGGPRALQEPSGLTKTLSFTIQWMNIIDLLSFLPFYLGLKLDFGEENFVFLRLLRVMRVIRIFRLGRYTDGSTVVRETLRASSAAVGLMAFFMIVLTLFFAAIS 277
            DD   E   R +VF+T  H  +S  A L   +M     I+C+ FVLSTMPRF   P  C  P+C P  P + C   IC P     L   E VT+ +F  DY++RL  VHAVP+RLI            R + +PS L KT  + +    +IDLL  LP+ L   +     N +  RLLR+ RV+R+ +L RY DG  +V  TL+ S  ++ L+  F IVLT    A++
Sbjct:   21 DDWRAEHTWRTMVFMTADHMYYSYYAWLYGTVMCTVTGISCIAFVLSTMPRFNYTPSQCSRPICRPSDPGAECDRVICYPRPHHYLIQTELVTLILFIFDYLVRLITVHAVPQRLIYWDGRRINEDHSRGVAQPSPLEKTFRYAVHADQVIDLLVILPYLLNYVI--STMNIMHWRLLRITRVLRVLKLSRYFDGGELVWNTLKNSGPSLMLLTLFTIVLTFIMGALA 246          
BLAST of EWM24405.1 vs. NCBI_GenBank
Match: gi|585110762|gb|EWM28384.1| (expulsion defective family member (exp-2) [Nannochloropsis gaditana])

HSP 1 Score: 150.984 bits (380), Expect = 1.017e-38
Identity = 87/228 (38.16%), Postives = 119/228 (52.19%), Query Frame = 0
Query:   51 DDNYGESNLRRLVFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRFQRQPGHCPDPVCLPG-PDSACPESICPPTQIPALFWVEAVTVGIFTIDYVLRLACVHAVPERLINPQHYLHQVGGPRALQEPSGLTKTLSFTIQWMNIIDLLSFLPFYLGLKLDFGEENFVFLRLLRVMRVIRIFRLGRYTDGSTVVRETLRASSAAVGLMAFFMIVLTLFFAAIS 277
            DD   E   R +VF+T  H  +S  A L   +M     I+C+ FVLSTMPRF   P  C  P+C P  P + C   IC P     L   E VT+ +F  DY++RL  VHAVP+RLI            R + +PS L KT  + +    +IDLL  LP+ L   +     N +  RLLR+ RV+R+ +L RY DG  +V  TL+ S  ++ L+  F IVLT    A++
Sbjct:   21 DDWRAEHTWRTMVFMTADHMYYSYYAWLYGTVMCTVTGISCIAFVLSTMPRFNYTPSQCSRPICRPSDPGAECDRVICYPRPHHYLIQTELVTLILFIFDYLVRLITVHAVPQRLIYWDGRRINEDHSRGVAQPSPLEKTFRYAVHADQVIDLLVILPYLLNYVI--STMNIMHWRLLRITRVLRVLKLSRYFDGGELVWNTLKNSGPSLMLLTLFTIVLTFIMGALA 246          
BLAST of EWM24405.1 vs. NCBI_GenBank
Match: gi|585109280|gb|EWM27103.1| (Ion transport [Nannochloropsis gaditana])

HSP 1 Score: 135.576 bits (340), Expect = 3.554e-32
Identity = 80/243 (32.92%), Postives = 135/243 (55.56%), Query Frame = 0
Query:   43 SRRIITRKDDNYGE--SNLRRLVFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRFQRQPGHCPDPVCLPGPDSACPESICPPTQIPALFWVEAVTVGIFTIDYVLRLACVHAVPERLINPQHYLHQVGGPRALQEPSGL------TKTLSFTIQWMNIIDLLSFLPFYLGLKLDFGEENFVFLRLLRVMRVIRIFRLG-RYTDGSTVVRETLRASSAAVGLMAFFMIVLTLFFAAI 276
            ++++++  D  + +  + LR L+F+TL HP  S LA  +S  +   I +  + F++ T+P   R P  C DPVC PGP + C E +C P +   ++ +E  T+ IFTIDY+LR+ CV AVP  L+ P+   + + G   L++ S         KT  + +  +NIID++S +PFY+ L   +       +R+ R +R + IF+LG R+ +   ++  TLRAS  A+ +  F   VL + F ++
Sbjct:   38 AKQVLSYSDSTFSDQLNALRVLIFVTLEHPRSSRLAWYISIFLVACILLNAISFMVGTIPSTLRHPTTCADPVCEPGPTTFCTEVVCRPRENRIIWHLELWTIVIFTIDYLLRVFCVPAVPVDLVFPRSLEYTIDG--RLKDRSNYYRMDPCKKTTKYMLSGLNIIDVISIVPFYVYLLAPYPA-----IRVFRFLRFLLIFKLGRRFREAGAIISRTLRASLPALLIFVFLTTVLAIVFGSM 273          
BLAST of EWM24405.1 vs. NCBI_GenBank
Match: gi|1129189903|gb|OLP95259.1| (Potassium voltage-gated channel subfamily A member 7 [Symbiodinium microadriaticum])

HSP 1 Score: 94.7449 bits (234), Expect = 6.736e-18
Identity = 61/183 (33.33%), Postives = 90/183 (49.18%), Query Frame = 0
Query:   57 SNLRRLVFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRFQRQPGHCPDPVCLPGPDSACPESICPPTQIPALFWVEAVTVGIFTIDYVLRLACVHAVPERLINPQHYLHQVGGPRALQEPSGLTKTLSFTIQWMNIIDLLSFLPFYLGLK-LDFGEENFVFLRLLRVMRVIRIFRL 238
              LRR VF  L+ P+ S +A+  S  +   I +T +  +L ++P     P  C         DS      C P    A F +E V + IFT+DYVLR+   HA+  R +  Q+    VG     +E      +  + IQW+N++DL + +PFYL L  L  G        ++RV+R+IRIFRL
Sbjct:  692 EGLRRTVFKVLNDPSSSEVAKWASYFITAVILVTTVSMLLESIPELSHVPDAC---------DSLVTVENCRPQPSQAFFQIELVCIIIFTVDYVLRICTAHAMTARELGVQY----VGE----KEVPAWKASWRYVIQWLNLVDLFAIVPFYLELAGLQLGSSA-----VIRVIRLIRIFRL 852          
BLAST of EWM24405.1 vs. NCBI_GenBank
Match: gi|873223725|emb|CEM28094.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 92.8189 bits (229), Expect = 2.567e-17
Identity = 68/242 (28.10%), Postives = 112/242 (46.28%), Query Frame = 0
Query:   43 SRRIITRKDDNYGESNLRRL------VFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRFQRQPGHCPDPVCLPGPDSACPESICPPTQIPALFW--VEAVTVGIFTIDYVLRLACVHAVPERLINPQHYLHQVGGPRALQEPSGLTKTLSFTIQWMNIIDLLSFLPFYLGLKLD-FGEENFVFLRLLRVMRVIRIFRLGRYTDGSTVVRETLRASSAAVGLMAFFMIVLTLFFAA 275
            +R +     DN  +  L R+      ++L L  P+ S +A ++S  + L I ++   F+L TMP                               +P   W  +E  TVG+FT+++VLRL+ V+ VPE       Y  ++                 F   WMN  DLL+F P+Y+ L L  F    F  LR++R++RV RIF+L RY+ G  ++ E L+ S  A+ ++ FF+ +  + F++
Sbjct:   61 TRELTAELQDNKWQQFLLRVEGAKKRIYLLLEVPDSSQVATVISIAIMLLIAVSVTAFMLETMPELN--------------------------DVVPLRVWEAIEGTTVGLFTLEFVLRLSVVNIVPE-------YTLKI-----------------FLTSWMNWFDLLAFAPYYVRLMLSSFALGGFRVLRVVRLIRVFRIFKLSRYSVGLRLMGEGLKRSIQALWILVFFLAIGIILFSS 252          
BLAST of EWM24405.1 vs. NCBI_GenBank
Match: gi|551655720|ref|XP_005830634.1| (hypothetical protein GUITHDRAFT_110453 [Guillardia theta CCMP2712] >gi|428174760|gb|EKX43654.1| hypothetical protein GUITHDRAFT_110453 [Guillardia theta CCMP2712])

HSP 1 Score: 92.4337 bits (228), Expect = 3.249e-17
Identity = 79/282 (28.01%), Postives = 129/282 (45.74%), Query Frame = 0
Query:    8 RNSNSSYHRAPPRQTSSDQRPSFSDRPPATVHHQLSRRIITRKDDNYGESNLRRLVFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRFQRQPGHCPDPVCLPGPDSACPESICPPTQIPALFWVEAVTVGIFTIDYVLR-LACVHAVPERLINPQHYLHQVG--------GPRALQEPSGLTKTL---SFTIQWMNIIDLLSFLPFYLGLKLDFGEENFVFLRLLRVMRVIRIFRLGRYTDGSTVVRETLRASSAAVGLMAFFM-IVLTLFFAAI 276
            RNS +S   A  R+         S  P A++  +LS                   V+ TL HP+ S LA +   ++ +TI I+C  F+  T+P                        S+C  +       ++ V + IFTIDYVLR + C     E L  P+ + +               + +P  LTK L   SF ++  N+IDLLS LPFY+  +L  G      ++++++ RV R+ R+ +Y+ GS ++  T+R S   +G++ FF+ I +TLF +A+
Sbjct:    7 RNSKASRSEAEERKGLRKTSSYISVSPDASILDRLSGH-----------------VWNTLEHPSSSRLASVWMIVLIVTIIISCTSFIAETIP------------------------SLCCGSTDGVWHQIDIVCIAIFTIDYVLRVITCPDIYVEYLPAPRLFGYNKAVTPEGDQVSDSTVNKPVWLTKLLARVSFVLRIANMIDLLSILPFYI--RLLAGSRRSGAIQVIKIGRVFRLLRIIKYSSGSELLARTIRTSIEPLGMLIFFVSIAVTLFSSAM 245          
BLAST of EWM24405.1 vs. NCBI_GenBank
Match: gi|425892106|gb|AFY09705.1| (potassium channel, partial [Nematostella vectensis])

HSP 1 Score: 89.3521 bits (220), Expect = 3.109e-16
Identity = 70/245 (28.57%), Postives = 122/245 (49.80%), Query Frame = 0
Query:   58 NLRRLVFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRF--QRQPGHCPDPVCLPGPDSAC--PESICPPTQIPALFWVEAVTVGIFTIDYVLRLACVHAVPERLINPQHYLHQVGGPRALQEPSGLTKTLSFTIQWMNIIDLLSFLPFYLGLKL-DFGEENFVFLRLLRVMRVIRIFRLGRYTDGSTVVRETLRASSAAVGLMAFFMIVLTLFFAA---ISGLSIPPSLFSSLPPSLF 294
            +L+R ++    +P+ S  AR+L+      I I+ + F + T+P F  +  P     P  LPG +S    PE   P  +  A   +E + +  FT++YV+RL         L +PQ  L                    F   ++N+IDL++ LP+Y+ L + D    +   LR++R++RV RIF+L R++ G  V+  TLRASS  + ++ FF+++  + F++    +      S FSS+P + +
Sbjct:  159 HLQRRIWELFEYPDSSMGARVLAVWSVSVILISIVVFCIETLPTFRCKTSPDGNGCPKLLPGTNSTADHPE---PVEKSSAWLALEILCIAWFTLEYVVRL---------LSSPQKLL--------------------FVRSFLNVIDLMAILPYYITLPMKDLRITSLAVLRVIRLVRVFRIFKLSRHSRGLQVLGHTLRASSRELAMLIFFLLISVVLFSSAVYYAEEEEAASKFSSIPDAFW 371          
BLAST of EWM24405.1 vs. NCBI_GenBank
Match: gi|1079805247|ref|XP_018527683.1| (PREDICTED: potassium voltage-gated channel subfamily A member 7-like [Lates calcarifer])

HSP 1 Score: 88.5817 bits (218), Expect = 5.551e-16
Identity = 62/278 (22.30%), Postives = 127/278 (45.68%), Query Frame = 0
Query:   40 HQLSRRIITRKDDNYG----------ESNLRRLVFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRFQRQPGHCPDPVCLPGPDSACPESICPPTQIP---ALFWVEAVTVGIFTIDYVLRLACVHAVPERLINPQHYLHQVGGPRALQEPSGLTKTLSFTIQWMNIIDLLSFLPFYLGLKLDFGEEN-------FVFLRLLRVMRVIRIFRLGRYTDGSTVVRETLRASSAAVGLMAFFMIVLTLFFAA---ISGLSIPPSLFSSLPPSLF 294
            ++L   II R  ++ G           ++L+R +++   +P  S  AR+++ +  + I I+ L F L T+P F+++         +P P  A    + PP   P     F VE + +  F+ + ++R  C  + P       H+   V                      MN ID  + +P+++ L  +  ++           +R++R++RV RIF+L R++ G  ++ +TL+AS   + L+ FF+ +  + F++    + +  P + F+S+P + +
Sbjct:  153 YELGEEIIDRFKEDEGFPKEEERPLPANDLQRRLWMLFEYPESSSGARIIAIISVMVIVISILIFCLETLPEFRQEKELREQYTTIPHPTIANETILIPPGFTPFQDPFFIVETICICWFSFELIMRFICAPSKP-------HFFKDV----------------------MNTIDFFAIIPYFVTLGTELAKDKGAQPSVSLALIRVIRLVRVFRIFKLSRHSKGLQILGQTLKASLRELALLIFFLFIGVIIFSSAVYFAEVDSPDTAFTSIPEAFW 401          
BLAST of EWM24405.1 vs. NCBI_GenBank
Match: gi|156369500|ref|XP_001628014.1| (predicted protein [Nematostella vectensis] >gi|156214979|gb|EDO35951.1| predicted protein, partial [Nematostella vectensis])

HSP 1 Score: 87.4261 bits (215), Expect = 8.454e-16
Identity = 72/245 (29.39%), Postives = 124/245 (50.61%), Query Frame = 0
Query:   58 NLRRLVFLTLHHPNFSPLARLLSALMGLTIFITCLGFVLSTMPRF--QRQPGHCPDPVCLPGPDSAC--PESICPPTQIPALFWVEAVTVGIFTIDYVLRLACVHAVPERLINPQHYLHQVGGPRALQEPSGLTKTLSFTIQWMNIIDLLSFLPFYLGLKL-DFGEENFVFLRLLRVMRVIRIFRLGRYTDGSTVVRETLRASSAAVGLMAFFMIV-LTLFFAAI--SGLSIPPSLFSSLPPSLF 294
            +L+R ++    +P+ S  AR+L+      I I+ + F + T+P F  +  P     P  LPG +S    PE   P  +  A   +E + +  FT++YV+RL         L +PQ  L                    F   ++N+IDL++ LP+Y+ L + D    +   LR++R++RV RIF+L R++ G  V+  TLRASS  + ++ FF+++ + LF +A+  +      S FSS+P + +
Sbjct:  112 HLQRRIWELFEYPDSSMGARVLAVWSVSVILISIVVFCIETLPTFRCKTSPDGNGCPKLLPGTNSTADHPE---PVEKSSAWLALEILCIAWFTLEYVVRL---------LSSPQKLL--------------------FVRSFLNVIDLMAILPYYITLPMKDLRITSLAVLRVIRLVRVFRIFKLSRHSRGLQVLGHTLRASSRELAMLIFFLLISVVLFSSAVYYAEEEEAASKFSSIPDAFW 324          
The following BLAST results are available for this feature:
BLAST of EWM24405.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105815|gb|EWM24405.1|0.000e+0100.00potassium voltage-gated channel subfamily d member... [more]
gi|585110761|gb|EWM28383.1|5.318e-3938.16expulsion defective family member (exp-2) [Nannoch... [more]
gi|585110762|gb|EWM28384.1|1.017e-3838.16expulsion defective family member (exp-2) [Nannoch... [more]
gi|585109280|gb|EWM27103.1|3.554e-3232.92Ion transport [Nannochloropsis gaditana][more]
gi|1129189903|gb|OLP95259.1|6.736e-1833.33Potassium voltage-gated channel subfamily A member... [more]
gi|873223725|emb|CEM28094.1|2.567e-1728.10unnamed protein product [Vitrella brassicaformis C... [more]
gi|551655720|ref|XP_005830634.1|3.249e-1728.01hypothetical protein GUITHDRAFT_110453 [Guillardia... [more]
gi|425892106|gb|AFY09705.1|3.109e-1628.57potassium channel, partial [Nematostella vectensis... [more]
gi|1079805247|ref|XP_018527683.1|5.551e-1622.30PREDICTED: potassium voltage-gated channel subfami... [more]
gi|156369500|ref|XP_001628014.1|8.454e-1629.39predicted protein [Nematostella vectensis] >gi|156... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6282rna6282Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications