rna628, rna628 (mRNA) Nannochloropsis gaditana

Overview
Namerna628
Unique Namerna628
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2054
Alignment locationCM002456.1:28883..30982 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101600g1.7593.mrna
Orig protein idgnl|cribi|Naga_101600g1.7593
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:28883..30982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101600g1gene603Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30045.1cds628Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna628rna628-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna628 ID=rna628|Name=rna628|organism=Nannochloropsis gaditana|type=mRNA|length=2054bp
ATGCGTTTCTCCTTGTCGCTATGCCTTAGCCTCGCGCTCCCATCTATAGC
ATGTACTGATTTCGACTTCTCCTCGCGAAAATATCCTCGTCGACTGAAAG
AAGCCTTACCATGTTTAGACTATGTAGTCGTCGGTGCCGGTAATGCTGGA
GCTGTTGTGGCAGCCCGTTTATCTGAAGACCCTGCTGTCCGCGTGCTCCT
CTTAGAGGAGGGTGACTACTCACAAGATAGCGGTAAAAGTGGAACAAGCC
AGCGCAAAGAGTGGATCTCCAAGCAGATCAGTACTCCACGTCACGACTAC
CGTACCTGGGCAATGCCAGCATTGACTGAACCATTGAATACCGAAGCCAA
TCCAGCTCTAAACAATCGCAGTGGCTTACTTGTGGGTCCTGTGATGACGG
GGAAAGCTTTGGGTGGATCAACAGCTATAAATATTGGGGCGTACACACGG
CCCGCACCAGCATATTTTGATCGGTGGGGACTTGAACACTGGGGCGGTGA
GGAAACCACCGCCTACTTTCGTAAGCTCGAGGACCATGAAGATATTAATC
CAGAATACGGAAAGAATGGACCGGTGCACGTGGAGCGCGGAGACGCCCAA
ACAATGTACTCCTACTTGTATGAAGCATCCGTCACCATGGATCCACCACT
ATGCAGCTCTTCGGCCGGTCGCCTGTCGTACGGTTTGCCGCAGGTTTATC
GAGCTGTCCAGCAGGGCACACGTGTGGATGCATACACTGCTTATCTGAGA
ACGGAAGCGGAGGCACGCAAGGACAACCTGATTGTGCGCACAGGTGCTCG
AGTTACACGGATTATTTTTGATGAATCGATGCGTGCGACAGGCGTTGAGT
ACATCTACAAGGATCCGGGTGCTTTGCACTTTCGGACCGGCGTTGCTGGA
GAGGACCCTCGTGTAGGCATAAGCAGGCAGAGAGAGAAAGCTGCTCATGT
GACTTTGCAAGCTAATGCCAAGCGGGAAGTAATTCTCTGCGCGGGTGTCT
TCTTCACTCCTCATCTTCTGCTCAAGTCGGGGTTGGGCCCTGCTGCAGAG
CTTGAGGCATTGGGGGTGCCCGTAGTTGCAGACCTGCCGGGGGTGGGCAA
GCACCTGATGGCTCGCACGAACGTCCTTTTCTTTTTCGGGAATGGAAGCA
TGGTGCCGGAAATGAATCCATTCGTCCTGAATAATCCAGCCACTACTGAT
CAGTATGATCTCGAGCGTCGGGGCCCCTACAGTCTTGGCGCCCTCGGCAT
CTATTCCGTTGTGAAAGGCCGCAAAAGTGAAGAAGACGACTACATTATGT
TTATGACGGATGTCATCCCTGAAGTGGCACCCCGCATGTTAGCTTTGGGC
TGCGCTAACCTCAAGGTCCATGGGCCAGGTGGGCAAGTGCTGCTTGACGC
TTTTGACCCCTTAGAGGCCAGGCATCCCCGCATTCAGCTTAACATGGCGG
CTGCCGAGGAAGATCGACGAGCGATCCGCCATTGCCTGCGAGATGTTCGG
GATATGATGGCCGAGCCGGTCATGGCCAACTTGGGATTTTCGGAAACGTT
TCCCACTGAGCGGCTGGTAGACAACTCAGAGAAAGCCTTAGACGAATGGA
TCAGCCGGGGCTACACGTTTTACAGTTGGCACGCTACCAGCACAGCAAGG
ATGGGCGACGTGCTTGATTCCCGCTTGCGTGTCCAGGGAGGCGTGAAGGG
TTTGCGGGTGGTGGACGCTAGCGCAGTGCCCAACATGATTGAGGCTGGAC
CCATGGCTACCTTGTACATGCTAGGGGAACGAGCCGCAGATCTTATCAAA
GAAGATAATCAGGATTGAATGGAAAGCTTCACACAAAACATTGGCATAGA
AAGGACCAAAGAAGGCGTCTTGAAATGAAATTGAAAATAAGCAAATGCAC
TAAGGATCAGGCACTTCGGGAAAAAAAGCGACGATTTAGCTACATCCTGC
TATTTAGTCACATATTGTAAAAATCATCCACCGTGTCCAGTTGTTTGATT
ACCTCTTCACATATGTTGCGTTTTCAAAAGATTCATTCTGTACACAAAAA
GCAA
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protein sequence of rna628

>rna628-protein ID=rna628-protein|Name=rna628|organism=Nannochloropsis gaditana|type=polypeptide|length=196bp
MRRILSLLALGVTLVMTAGQEFTLKNVKVAERSKTARDQWSMKGNLDNPA
MNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGA
RVSIKRTRRPKGAKVKSSNSNSTGGYYGASGMFRRLQFLQDPVVTPLTVQ
VVVGSTTLPAIVSTCSERTKGAGRITKITCTPGPAPVTPAPTAASP
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mRNA from alignment at CM002456.1:28883..30982-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna628 ID=rna628|Name=rna628|organism=Nannochloropsis gaditana|type=mRNA|length=2100bp|location=Sequence derived from alignment at CM002456.1:28883..30982- (Nannochloropsis gaditana)
TTTGGGAGTTTCCTTGATACTTGCGCCTGTTCACCCCAGCCGTTACCGGT
AGCTTTAAAGCGTGCGCTGCGGAACGAGGAGAGGAAAAGAGTGGGAAAGA
AACGACTGTCGAATCTCTCTACTGCAGCAGAGGATCGGCATGTCTGTGGA
CACAATGAATCAATCATCTGTAGGCTCTTAGCAGTAGGAAAAGACAAGGT
CAGACCATATAGCCGACGGAAATAGCTACGCGTGCATAGCGTTCGTTCTT
AATCTTGGGAGTGGGTGACAAGATTTCTCCTTTGAATCGTCCTCTTTTTC
CCTCTCTCTCATCCAGAGGTGTGGAGCATGTAAGATTGTGTACTTATTTT
ATCTGACAGTGTCCATGATATAGCATCAGTATTAAATAAATAGTACTTAT
ATTATAATTTCGCAAGCTATCTTTGCTTCGAAACGGAATTGCTTGTGGCC
ATGTTAGACGAGTAAGCGCATGGTAGAAAAGAGCCCAGTGTACGGGACAG
AACTGAACAAGCGCGAGTAGGAATGCTCATATACACACCTCTTATTGCCA
CCTTTTCTCGTAGTGTTCAATTCCTCGATCCTCTCTATCGCCACCATGCG
CCGCATCCTTTCTCTGCTCGCCCTGGGCGTCACGCTCGTCATGACTGCCG
GTCAAGAGTTTACCCTGAAGAACGTCAAGGTCGCTGAAAGATCCAAGACA
GCGAGGGATCAGTGGAGCATGAAGGGCAATCTAGATAATCCAGCGATGAA
TGTTGTACCTGCAATCGGCCAGTTAGGTCTTACCGTGAATTTGCTGGATG
TCAGCTTGGACCCGCTTGCCAGCACTGCTTTCGCGGCCACCAATTGCAAG
CTGCTTCGAAACGGACGAGGCGTCAGGTGTAAGAAGATGGGTGCCCGGGT
GTCCATTAAAAGGACCAGGCGTCCCAAGGGTGCCAAGGTGAAGAGCAGCA
ACTCCAACTCGACTGGCGGGTACTACGGCGCGTCGGGAATGTTCCGCCGA
TTGCAGTTCCTGCAGGACCCTGTGGTGACCCCCCTGACCGTTCAAGTGGT
AGTGGGGAGCACAACTTTACCTGCGATTGTCTCTACATGCTCTGAGAGGA
CCAAGGGTGCTGGGAGGATCACCAAAATCACTTGCACGCCAGGGCCCGCT
CCTGTTACACCTGCCCCTACCGCCGCTTCTCCCTAATAATGTGAAGTGTG
GACCCGGTTAGGTTTCCGACTGACTAGGCGGCCGGCCTCCATAGCATTGG
GCAACCAATAGTTCATTCTGCTTGGTGATCTCTATGTAAGGAATGACTTG
AATTAGAGATGCTCCACTGTCTGTGTAATACTACTTGTGTGTGTGAGTGT
GGTCCTGTAACATGTCAGTGTCCGTAAGGTTTCTTTCCCCCTGAGTTAGT
CCTTGCCTTCTTGTCATATGCGACAGCAATATAGCGAGAAGCCTTGTGCC
CATGAATGTTGGCTTCAGTACGGGCCGTACCTACCATTCGTGAGCGAAAG
ACTCGTCGGGAGTCATTGTGAGTCGTGGGTTACTGAAGTGTGATTTTGGG
CTTTCTTTCTGACTGCTGGTTGGAAACAAAGGAATGCCTTTACGACAAAA
GAATGGAAAATAATACCCCGGAAAGTATCCAGGTCTATTTTGTTCTTTGT
ATGTGGATTGTCCACTGCAGATCTCATCTCGAGAATTCCTGAAAAGGTCC
TAAACCCATCTTGTTTCGCGAGGGTAGGTTCATCGACTTACAAGATTAGC
CATGCGCAAGAATGAAGCAGGAGCTGAGATGCCTCCACAGAGTATTGTCA
TCGCTTGTGAAATGTCTCATGCATCCTACTTGAGCCATATCGAAAGATCT
CGAGTCCCTCAACTCAACACTTTTTCCCTTTCTTCCCGGCCCTGTTCTTC
GTGGTAGTCTTGTGTCTAACATTGATATTCCCAAGGCCATGATGGAGAGA
AGCTTTCTGGAGATTCGACAAAATGCTGACCAAACAAAGGAACATGGTCA
GTCCGTTGGCCTTGTCCACCTCACTGGAAGAGGTAGCACGGTCAGGTTTA
GACACCACCGGGTACATCAGAAGCAACAAATGCTTTTTTTGCACATCTAG
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Coding sequence (CDS) from alignment at CM002456.1:28883..30982-

>rna628 ID=rna628|Name=rna628|organism=Nannochloropsis gaditana|type=CDS|length=591bp|location=Sequence derived from alignment at CM002456.1:28883..30982- (Nannochloropsis gaditana)
ATGCGCCGCATCCTTTCTCTGCTCGCCCTGGGCGTCACGCTCGTCATGAC
TGCCGGTCAAGAGTTTACCCTGAAGAACGTCAAGGTCGCTGAAAGATCCA
AGACAGCGAGGGATCAGTGGAGCATGAAGGGCAATCTAGATAATCCAGCG
ATGAATGTTGTACCTGCAATCGGCCAGTTAGGTCTTACCGTGAATTTGCT
GGATGTCAGCTTGGACCCGCTTGCCAGCACTGCTTTCGCGGCCACCAATT
GCAAGCTGCTTCGAAACGGACGAGGCGTCAGGTGTAAGAAGATGGGTGCC
CGGGTGTCCATTAAAAGGACCAGGCGTCCCAAGGGTGCCAAGGTGAAGAG
CAGCAACTCCAACTCGACTGGCGGGTACTACGGCGCGTCGGGAATGTTCC
GCCGATTGCAGTTCCTGCAGGACCCTGTGGTGACCCCCCTGACCGTTCAA
GTGGTAGTGGGGAGCACAACTTTACCTGCGATTGTCTCTACATGCTCTGA
GAGGACCAAGGGTGCTGGGAGGATCACCAAAATCACTTGCACGCCAGGGC
CCGCTCCTGTTACACCTGCCCCTACCGCCGCTTCTCCCTAA
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Synonyms
Publications