EWM30045.1, cds628 (CDS) Nannochloropsis gaditana

Overview
NameEWM30045.1
Unique Namecds628
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:29797..30387 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30045.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101600g1.7593.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:29797..30387 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM30045.1 vs. NCBI_GenBank
Match: gi|585112674|gb|EWM30045.1| (hypothetical protein Naga_101600g1 [Nannochloropsis gaditana])

HSP 1 Score: 393.66 bits (1010), Expect = 1.646e-138
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0
Query:    1 MRRILSLLALGVTLVMTAGQEFTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGARVSIKRTRRPKGAKVKSSNSNSTGGYYGASGMFRRLQFLQDPVVTPLTVQVVVGSTTLPAIVSTCSERTKGAGRITKITCTPGPAPVTPAPTAASP 196
            MRRILSLLALGVTLVMTAGQEFTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGARVSIKRTRRPKGAKVKSSNSNSTGGYYGASGMFRRLQFLQDPVVTPLTVQVVVGSTTLPAIVSTCSERTKGAGRITKITCTPGPAPVTPAPTAASP
Sbjct:    1 MRRILSLLALGVTLVMTAGQEFTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGARVSIKRTRRPKGAKVKSSNSNSTGGYYGASGMFRRLQFLQDPVVTPLTVQVVVGSTTLPAIVSTCSERTKGAGRITKITCTPGPAPVTPAPTAASP 196          
BLAST of EWM30045.1 vs. NCBI_GenBank
Match: gi|585099453|gb|EWM20105.1| (hypothetical protein Naga_101776g1 [Nannochloropsis gaditana])

HSP 1 Score: 340.117 bits (871), Expect = 4.341e-117
Identity = 168/171 (98.25%), Postives = 169/171 (98.83%), Query Frame = 0
Query:    1 MRRILSLLALGVTLVMTAGQEFTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGARVSIKRTRRPKGAKVKSSNSNSTGGYYGASGMFRRLQFLQDPVVTPLTVQVVVGSTTLPAIVSTCSERTKG 171
            MRRILSLLALGVTLVMTAGQEFTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGV CKKMGARVSIKRTRRPKGAKVKSSNSNSTGGYYGASGMFRRLQFLQDPVVTP+TVQV VGSTTLPAIVSTCSERTKG
Sbjct:   37 MRRILSLLALGVTLVMTAGQEFTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVSCKKMGARVSIKRTRRPKGAKVKSSNSNSTGGYYGASGMFRRLQFLQDPVVTPVTVQVKVGSTTLPAIVSTCSERTKG 207          
BLAST of EWM30045.1 vs. NCBI_GenBank
Match: gi|585099510|gb|EWM20135.1| (hypothetical protein Naga_101626g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 322.398 bits (825), Expect = 2.080e-110
Identity = 159/182 (87.36%), Postives = 164/182 (90.11%), Query Frame = 0
Query:    1 MRRILSLLALGVTLVMTAGQEFTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGARVSIKRTRRPKGAKVKSSNSNSTGGYYGASGMFRRLQFLQDPVVTPLTVQVVVGSTTLPAIVSTCSERTKGAGRITKITCTP 182
            MR ILSLLALG+TLVMTAGQEFTLKN+KVA R KTARDQWSMKGNLDNP MNVVP IGQ GLTVNLLD SL PLAS AFAATNCKLLRN RGV CK MGARV IKRTRRPK AKVKSS+ NSTGGYY ASGMFRRLQFLQD VVTPLTVQ+VVG+TTLPAIVSTCSERTK AGRITKITCTP
Sbjct:    1 MRCILSLLALGITLVMTAGQEFTLKNIKVAGRFKTARDQWSMKGNLDNPTMNVVPVIGQSGLTVNLLDASLSPLASAAFAATNCKLLRNARGVSCKSMGARVYIKRTRRPKAAKVKSSSYNSTGGYYAASGMFRRLQFLQDTVVTPLTVQLVVGTTTLPAIVSTCSERTKSAGRITKITCTP 182          
BLAST of EWM30045.1 vs. NCBI_GenBank
Match: gi|585112664|gb|EWM30036.1| (hypothetical protein Naga_100179g1 [Nannochloropsis gaditana])

HSP 1 Score: 275.018 bits (702), Expect = 4.300e-89
Identity = 140/199 (70.35%), Postives = 159/199 (79.90%), Query Frame = 0
Query:    1 MRRILSLLALGVTLVMTAGQE-FTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGARVSIKRTRRPKGAKVKSSNSNSTGGYYGASGMFRRLQFLQDPVVTPLTVQVVVGSTTLP--AIVSTCSERTKGAGRITKITCTPGPAPVTPAPTAASP 196
            MRR   LLALG+TLVMTAGQ+ FTLKNVKV ++SKTARDQWSMKGNLD+P M VVP IGQ GLTV L D++L  L STAFAA++CKL RNGRGV CK  GARVSIK +RRPKGA V++SN NSTGGYY ASGMFRRLQFLQDP+V PLTV + V S   P  A+VS+CSE+ KGAGR T+ITCTPGP P+T      SP
Sbjct:   20 MRRAFFLLALGITLVMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRRPKGAYVQNSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPGPTPLTRGLILISP 218          
BLAST of EWM30045.1 vs. NCBI_GenBank
Match: gi|553189589|ref|XP_005855033.1| (hypothetical protein NGA_0415500 [Nannochloropsis gaditana CCMP526] >gi|422294031|gb|EKU21331.1| hypothetical protein NGA_0415500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 255.373 bits (651), Expect = 9.607e-84
Identity = 130/181 (71.82%), Postives = 148/181 (81.77%), Query Frame = 0
Query:    1 MRRILSLLALGVTLVMTAGQE-FTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGARVSIKRTRRPKGAKVKSSNSNSTGGYYGASGMFRRLQFLQDPVVTPLTVQVVVGSTTLP--AIVSTCSERTKGAGRITKI 178
            MRR   LLALG+TLVMTAGQ+ FTLKNVKV ++SKTARDQWSMKGNLD+P M VVP IGQ GLTV L D++L  L STAFAA++CKL RNGRGV CK  GARVSIK +RRPKGA V++SN NSTGGYY ASGMFRRLQFLQDP+V PLTV + V S   P  A+VS+CSE+ KGAGR T+I
Sbjct:    1 MRRAFFLLALGITLVMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRRPKGANVQNSNYNSTGGYYSASGMFRRLQFLQDPIVFPLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRI 181          
BLAST of EWM30045.1 vs. NCBI_GenBank
Match: gi|585100200|gb|EWM20521.1| (hypothetical protein Naga_100335g8, partial [Nannochloropsis gaditana])

HSP 1 Score: 182.956 bits (463), Expect = 8.150e-55
Identity = 98/199 (49.25%), Postives = 131/199 (65.83%), Query Frame = 0
Query:    1 MRRILSLLALGVTL----VMTAGQEFTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGARVSIKRTRRPK---GAKVKSSNSNSTGGYYGASGMFRRLQFLQDPVVTPLTVQVVVGSTTLPAIVSTCSERTKGAGRITKITCTPGPAPVTPAPT 192
            MR  LSLLALG+TL    V TAGQ+  LK+++  +RS T +D W MKGN+++P++  VPAIGQ GLTV L D + DPL + AFAA++C++  +GR   CK  GARVSIKR+RRPK      V + + NSTGGYY  +G FR L FL++PVV+PLT  + V  + L   + +C +  + + R T   C PGP PV P PT
Sbjct:    1 MRSPLSLLALGITLGSTLVTTAGQDLNLKSIRAVDRSVTNKDTWKMKGNINDPSLTFVPAIGQTGLTVELQDAATDPLNTVAFAASDCRVPAHGRRAACKIRGARVSIKRSRRPKIKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRVNGSVLSDTLISCYDLARKSARSTISQCEPGP-PV-PTPT 197          
BLAST of EWM30045.1 vs. NCBI_GenBank
Match: gi|585108538|gb|EWM26485.1| (Neuraminidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 183.341 bits (464), Expect = 9.728e-55
Identity = 96/199 (48.24%), Postives = 131/199 (65.83%), Query Frame = 0
Query:    1 MRRILSLLALGVT----LVMTAGQEFTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGARVSIKRTRRPK---GAKVKSSNSNSTGGYYGASGMFRRLQFLQDPVVTPLTVQVVVGSTTLPAIVSTCSERTKGAGRITKITCTPGPAPVTPAPT 192
            MR  LSLL LGVT    LV TAGQ+  LK+++  +RS T +D W MKGN+++P++ +VPAIGQ GLTV L D + DPL + AFAA++C++  +GR   CK  GARVSIK +RRPK      V + + NSTGGYY  +G FR L FL++PVV+PLT  + +  + L   +++C +  + +GR T   C PGP    PAPT
Sbjct:    1 MRSALSLLVLGVTFGSTLVPTAGQDLNLKSIRTVDRSVTNKDTWKMKGNINDPSLTIVPAIGQTGLTVELQDAATDPLNTVAFAASDCRVPAHGRRATCKIRGARVSIKTSRRPKVKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRINGSVLSDTLTSCYDLARKSGRNTISHCEPGP----PAPT 195          
BLAST of EWM30045.1 vs. NCBI_GenBank
Match: gi|585108537|gb|EWM26484.1| (Neuraminidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 184.111 bits (466), Expect = 1.803e-54
Identity = 96/199 (48.24%), Postives = 131/199 (65.83%), Query Frame = 0
Query:    1 MRRILSLLALGVT----LVMTAGQEFTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGARVSIKRTRRPK---GAKVKSSNSNSTGGYYGASGMFRRLQFLQDPVVTPLTVQVVVGSTTLPAIVSTCSERTKGAGRITKITCTPGPAPVTPAPT 192
            MR  LSLL LGVT    LV TAGQ+  LK+++  +RS T +D W MKGN+++P++ +VPAIGQ GLTV L D + DPL + AFAA++C++  +GR   CK  GARVSIK +RRPK      V + + NSTGGYY  +G FR L FL++PVV+PLT  + +  + L   +++C +  + +GR T   C PGP    PAPT
Sbjct:    1 MRSALSLLVLGVTFGSTLVPTAGQDLNLKSIRTVDRSVTNKDTWKMKGNINDPSLTIVPAIGQTGLTVELQDAATDPLNTVAFAASDCRVPAHGRRATCKIRGARVSIKTSRRPKVKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRINGSVLSDTLTSCYDLARKSGRNTISHCEPGP----PAPT 195          
BLAST of EWM30045.1 vs. NCBI_GenBank
Match: gi|585109630|gb|EWM27399.1| (hypothetical protein Naga_100212g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 175.252 bits (443), Expect = 2.244e-51
Identity = 95/199 (47.74%), Postives = 128/199 (64.32%), Query Frame = 0
Query:    1 MRRILSLLALGVTL----VMTAGQEFTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGARVSIKRTRRPK---GAKVKSSNSNSTGGYYGASGMFRRLQFLQDPVVTPLTVQVVVGSTTLPAIVSTCSERTKGAGRITKITCTPGPAPVTPAPT 192
            MR  LSLLALG+TL    V TAGQ+  LK+++  +RS T +D W MKG++++P++ +V AIGQ GLTV L D + DPL +  FAA++C++  +GR   CK  GARVSIK +RRPK      V + + NSTGGYY  +G FR L FL++PVV+PLT  + V  + L   ++ C    +  GR T   C PGP PV P PT
Sbjct:    1 MRSTLSLLALGITLGSTLVTTAGQDLNLKSIRAVDRSVTNKDTWKMKGSINDPSLTIVSAIGQKGLTVELQDAATDPLNTVTFAASDCRVPAHGRRAACKIRGARVSIKTSRRPKIKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALTVDESVLSDTLTLCYNLPRKNGRNTISHCEPGP-PV-PTPT 197          
BLAST of EWM30045.1 vs. NCBI_GenBank
Match: gi|585102401|gb|EWM22005.1| (hypothetical protein Naga_100353g3 [Nannochloropsis gaditana])

HSP 1 Score: 169.474 bits (428), Expect = 4.173e-49
Identity = 104/196 (53.06%), Postives = 137/196 (69.90%), Query Frame = 0
Query:    1 MRRILSLLALGVTLVMTAGQEFTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGARVSIKRTRRPKGAKVKSSNSNSTGGYYGASGMFRRLQFLQDPVVTPLTVQVVV-GSTTLPAIVSTCSERTKGAGRITKITCTPGPAPVTPAPTAAS 195
            MRR LSLLALG+TL +T GQ  +LK++K  ER++  +D+WSMKGNL++P + VV  IG  GLTV LLD + D L + +FAA +C + +N +G +CK MGARVSI+ ++ PKG KVK+   NSTGGYY  SG FR +Q  +DPV++PLT ++ V G  TL   ++ CS R  GAG  T+ TC PGP   T APTAAS
Sbjct:   68 MRRGLSLLALGLTLALTTGQMLSLKSIKTFERTRMNKDKWSMKGNLEDPTLAVVSGIGTSGLTVTLLDTADDTLDTASFAAGDCMVRKNSKGAKCKMMGARVSIRASKPPKGVKVKT--YNSTGGYYSVSGSFRGVQLQEDPVISPLTAELTVQGVGTLSQTLTDCSVR--GAG-TTRTTCVPGPIIPTNAPTAAS 258          
The following BLAST results are available for this feature:
BLAST of EWM30045.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112674|gb|EWM30045.1|1.646e-138100.00hypothetical protein Naga_101600g1 [Nannochloropsi... [more]
gi|585099453|gb|EWM20105.1|4.341e-11798.25hypothetical protein Naga_101776g1 [Nannochloropsi... [more]
gi|585099510|gb|EWM20135.1|2.080e-11087.36hypothetical protein Naga_101626g1, partial [Nanno... [more]
gi|585112664|gb|EWM30036.1|4.300e-8970.35hypothetical protein Naga_100179g1 [Nannochloropsi... [more]
gi|553189589|ref|XP_005855033.1|9.607e-8471.82hypothetical protein NGA_0415500 [Nannochloropsis ... [more]
gi|585100200|gb|EWM20521.1|8.150e-5549.25hypothetical protein Naga_100335g8, partial [Nanno... [more]
gi|585108538|gb|EWM26485.1|9.728e-5548.24Neuraminidase, partial [Nannochloropsis gaditana][more]
gi|585108537|gb|EWM26484.1|1.803e-5448.24Neuraminidase, partial [Nannochloropsis gaditana][more]
gi|585109630|gb|EWM27399.1|2.244e-5147.74hypothetical protein Naga_100212g1, partial [Nanno... [more]
gi|585102401|gb|EWM22005.1|4.173e-4953.06hypothetical protein Naga_100353g3 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna628rna628Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications