rna6271, rna6271 (mRNA) Nannochloropsis gaditana

Overview
Namerna6271
Unique Namerna6271
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length565
Alignment locationCM002468.1:141192..142615 +

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Properties
Property NameValue
ProductDNA polymerase, Y-family, little finger domain protein
Orig transcript idgnl|cribi|Naga_101269g3.10056.mrna
Orig protein idgnl|cribi|Naga_101269g3.10056
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:141192..142615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101269g3gene6064Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6271rna6271-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24416.1cds6256Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6271 ID=rna6271|Name=rna6271|organism=Nannochloropsis gaditana|type=mRNA|length=565bp
CTCCCTCCCTCCCTCCCTCCCTCCTTCCAACCAGCCTACAGCAATTGGGG
CCGTGTCGTCGACATCTATGCCCCAGGCGGTGGCATTTACTCTGCCTCCA
ACGCGGGAAACAATCAGTACACTTATTTGAGCGGCACTTCCATGTCCACC
CCCCTGGTGGCGGGAGGAGTGGCCTGTGTGCTCGCGGGCGACCCGGGCAG
GTCGTGCTCGAATGACGCGTTGGTCCGCAAACTCATTAATCCATCCGTAG
ACGTCGCGCAGGGGGGACCGCTGCAAGCTAATATGCGTCCAAACCGTCCT
TTGTTCTATTTACCCCCGGACGCGGACGTGAAGTGCCCTTGAGGAGCGAA
TGAGGAAGGAGAAAGTAGCAAGCTGGGGGCAGCTGTGGGAGAAAGAGGTA
GGAAATTATGGAATTTATTCAACTGGACAACAGCGAGAAGAATATGAGTA
CCAGAATTCAAATTAGCCAGCCGCAAGTGATGGGGCCTTTAAAAAATTTG
AAAGAAAGAAAGAGTCTTCACCATGAATGAGTGCTCTGTATCTTGTAAGT
GCCTTTTTCTAGTAT
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protein sequence of rna6271

>rna6271-protein ID=rna6271-protein|Name=rna6271|organism=Nannochloropsis gaditana|type=polypeptide|length=325bp
AHRLVSLAWGQDSSPVRRSPPPSLPKSMSEEDSFSTFSLPFPPHQPPAHH
PRLLPSLPPPYPGSVHPPPPLAPGAAVTTREEAARRLRRLVTDLAMRVDE
RRRVHGEVGKGGDRGQRSRCLWGALGDNARLQSFAPSLPPSLSLPAASPH
SAHHHHPPHLFLPRFLAPLLLHHPARISADSFEKPSYNFLPPPILPACAF
PPSLPPSFVPSPSSRPRLSFLLLPPFLLPFLPSSSSGRSPGSRRPLRRRQ
GAAFRPLAPSPSFPPSLPPSLHPSLPFGHDECMSRQFSVRRRCERERGRE
GGREGREAGHLPFPLAVCESVRPWG
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mRNA from alignment at CM002468.1:141192..142615+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6271 ID=rna6271|Name=rna6271|organism=Nannochloropsis gaditana|type=mRNA|length=1424bp|location=Sequence derived from alignment at CM002468.1:141192..142615+ (Nannochloropsis gaditana)
GCCCACCGCCTGGTCTCCCTCGCCTGGGGACAggactcctcccccgtccg
ccgctcccccccgccctccctccccaagtCCATGTCAGAGGAAgactcct
tctccaccttctccctccccttccctcctcatcaaccCCCGGCCCACCac
cctcgccttcttccctcccttcctcctccttacccTGGATCCGTGcatcc
acccccgcctcttGCACCGGGAGCAGCGGTGACGACTAGGGAAGAAGCAg
cgaggaggttgaggcggCTGGTAACGGATTTGGCGATGCGCGTGGacgaa
agaagaagggtgcatggggaggtagggaagggaggggatagAGGCCAACG
GTCTAGATGTCTTTGGGGCGCCCTGGGAGACAACGCAAGGCTACAatcct
tcgctccctccctccctccctccctctccctccctgcagctTCCCCACAC
TCTGCGCATCACCATCATCCGCCGCATCTTTTCctgccccgcttcctcgc
ccccctcctcctccaccacccggcGAGAATCTCGGCAGATTCCTTTGAAA
AACCCTCTTACAATTttctgcccccgcccatcctccctgcctgcgccttc
cctccctctctccctccctccttcgttccctccccttcctcccgccctcg
cctctccttcctcctcctccctcccttcctccttcccttcctcccttcct
cctcctccggtcGCTCCCCAGGTAGTCGACGCCCTCTTCGACGCCGCCAA
GGCGCTGCTTTTCGaccgcttgctccctccccctccttccctccttccct
cccgccctccctccacccttcccttccctttggcCATGATGAATGTATGT
CTCGGCAATTTTCGGTCCGTCGTCGGtgcgagagggagcgagggcgggaa
ggagggagggaaggaagggaggcagggcacctcccctttcctcttgcgGT
TTGCGAAAGCGTCAGGCCGTGGggctgaggaaggagggtggaagggaggc
ggaatCGATGAaaaggacgaagacgaggaggagggggagggagggaagga
cggaagaggaggggaggaggtggtgacggagaaggggaaagacgggggga
aagaagaggagggggcaacgaaggaagagaggagggaggaaaagcaggct
TCCAAACGTCCGAGACCGGCTAGCGTGTTGGTGGAATGTGATCAATGTGG
AGGGCttgtgcaggaggaggaggaggtgcacAAGCGCGGGCATGCtgcgg
aagaaaaaaggtcggagagagagggaggagggagggaaagaaacgTTTCC
ATGACGGATGAGAGGGGCCTGGTGGAGCGAGGGGTGGGAATGGCCTGGAA
GCTGTACTGCTCTCTGCCCAAACTTACCCGGAGGGAGATTTTGGCGGAGG
CCCGGGAGATGCatgcggagaggg
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Coding sequence (CDS) from alignment at CM002468.1:141192..142615+

>rna6271 ID=rna6271|Name=rna6271|organism=Nannochloropsis gaditana|type=CDS|length=978bp|location=Sequence derived from alignment at CM002468.1:141192..142615+ (Nannochloropsis gaditana)
GCCCACCGCCTGGTCTCCCTCGCCTGGGGACAggactcctcccccgtccg
ccgctcccccccgccctccctccccaagtCCATGTCAGAGGAAgactcct
tctccaccttctccctccccttccctcctcatcaaccCCCGGCCCACCac
cctcgccttcttccctcccttcctcctccttacccTGGATCCGTGcatcc
acccccgcctcttGCACCGGGAGCAGCGGTGACGACTAGGGAAGAAGCAg
cgaggaggttgaggcggCTGGTAACGGATTTGGCGATGCGCGTGGacgaa
agaagaagggtgcatggggaggtagggaagggaggggatagAGGCCAACG
GTCTAGATGTCTTTGGGGCGCCCTGGGAGACAACGCAAGGCTACAatcct
tcgctccctccctccctccctccctctccctccctgcagctTCCCCACAC
TCTGCGCATCACCATCATCCGCCGCATCTTTTCctgccccgcttcctcgc
ccccctcctcctccaccacccggcGAGAATCTCGGCAGATTCCTTTGAAA
AACCCTCTTACAATTttctgcccccgcccatcctccctgcctgcgccttc
cctccctctctccctccctccttcgttccctccccttcctcccgccctcg
cctctccttcctcctcctccctcccttcctccttcccttcctcccttcct
cctcctccggtcGCTCCCCAGGTAGTCGACGCCCTCTTCGACGCCGCCAA
GGCGCTGCTTTTCGaccgcttgctccctccccctccttccctccttccct
cccgccctccctccacccttcccttccctttggcCATGATGAATGTATGT
CTCGGCAATTTTCGGTCCGTCGTCGGtgcgagagggagcgagggcgggaa
ggagggagggaaggaagggaggcagggcacctcccctttcctcttgcgGT
TTGCGAAAGCGTCAGGCCGTGGggctga
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Synonyms
Publications