EWM24416.1, cds6256 (CDS) Nannochloropsis gaditana

Overview
NameEWM24416.1
Unique Namecds6256
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:141192..142169 +

Link to JBrowse

Properties
Property NameValue
Start range141192
Start range.
Protein idEWM24416.1
ProductDNA polymerase, Y-family, little finger domain protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101269g3.10056.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:141192..142169 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24416.1 vs. NCBI_GenBank
Match: gi|585105842|gb|EWM24416.1| (DNA polymerase, Y-family, little finger domain protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 611.683 bits (1576), Expect = 0.000e+0
Identity = 325/325 (100.00%), Postives = 325/325 (100.00%), Query Frame = 0 
Query:    1 AHRLVSLAWGQDSSPVRRSPPPSLPKSMSEEDSFSTFSLPFPPHQPPAHHPRLLPSLPPPYPGSVHPPPPLAPGAAVTTREEAARRLRRLVTDLAMRVDERRRVHGEVGKGGDRGQRSRCLWGALGDNARLQSFAPSLPPSLSLPAASPHSAHHHHPPHLFLPRFLAPLLLHHPARISADSFEKPSYNFLPPPILPACAFPPSLPPSFVPSPSSRPRLSFLLLPPFLLPFLPSSSSGRSPGSRRPLRRRQGAAFRPLAPSPSFPPSLPPSLHPSLPFGHDECMSRQFSVRRRCERERGREGGREGREAGHLPFPLAVCESVRPWG 325
            AHRLVSLAWGQDSSPVRRSPPPSLPKSMSEEDSFSTFSLPFPPHQPPAHHPRLLPSLPPPYPGSVHPPPPLAPGAAVTTREEAARRLRRLVTDLAMRVDERRRVHGEVGKGGDRGQRSRCLWGALGDNARLQSFAPSLPPSLSLPAASPHSAHHHHPPHLFLPRFLAPLLLHHPARISADSFEKPSYNFLPPPILPACAFPPSLPPSFVPSPSSRPRLSFLLLPPFLLPFLPSSSSGRSPGSRRPLRRRQGAAFRPLAPSPSFPPSLPPSLHPSLPFGHDECMSRQFSVRRRCERERGREGGREGREAGHLPFPLAVCESVRPWG
Sbjct:    1 AHRLVSLAWGQDSSPVRRSPPPSLPKSMSEEDSFSTFSLPFPPHQPPAHHPRLLPSLPPPYPGSVHPPPPLAPGAAVTTREEAARRLRRLVTDLAMRVDERRRVHGEVGKGGDRGQRSRCLWGALGDNARLQSFAPSLPPSLSLPAASPHSAHHHHPPHLFLPRFLAPLLLHHPARISADSFEKPSYNFLPPPILPACAFPPSLPPSFVPSPSSRPRLSFLLLPPFLLPFLPSSSSGRSPGSRRPLRRRQGAAFRPLAPSPSFPPSLPPSLHPSLPFGHDECMSRQFSVRRRCERERGREGGREGREAGHLPFPLAVCESVRPWG 325
The following BLAST results are available for this feature:
BLAST of EWM24416.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105842|gb|EWM24416.1|0.000e+0100.00DNA polymerase, Y-family, little finger domain pro... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6271rna6271Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications