rna627, rna627 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna627
Unique Name	rna627
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1899
Alignment location	CM002456.1:24501..26554 -

Link to JBrowse

Properties


Property Name	Value
Product	choline dehydrogenase
Orig transcript id	gnl\|cribi\|Naga_100225g10.3524.mrna
Orig protein id	gnl\|cribi\|Naga_100225g10.3524
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:24501..26554 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100225g10	gene602	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30046.1	cds627	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna627	rna627-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:24501..26554-
coding sequence from alignment at CM002456.1:24501..26554-

mRNA sequence

>rna627 ID=rna627|Name=rna627|organism=Nannochloropsis gaditana|type=mRNA|length=1899bp
ATCCCTCCACACTTTACAAAACCTGTAGACAAAGCAATTGACCATCTTTA
TTCCTCTTCTCTGACATTCATTCCCCGAATTTCAGCGAGTGTACCCATCG
CGTTCGATAAATGCGTTCGGCTTGTGTGCATGTGCAACGTGGTGGGAGCT
GGTGGCTGCAACACAGAGCGAAATTGGAATGAGCAGGTCCTAAATTTCTG
ACTCTTGAATCTTAGTCATCCAGAAAGACGTCTATGGACGAAAGATGGAT
TCTTGTCACATTTTGAGTGTACGAATGAGCGCAATTCCAATTGCTTGTCT
TGACCCGCAACAGAACAGTCGACCTTCCTCTTTGTTCCTCCTTTAGCCCG
GGAGCTTTCCAGAAAGACCTCCTCATACCCCTCTTTACGAATTGTCCATG
CGTTCTTTCGTAAACAGATCTCACAAGTCATGTTGAGCGTCATAAGCCGT
CGCTGTCTTCAAACCCAGAAGCGTTTTTTGCTTCGCTCAAGTGCATCAGT
TCATCCCACTACATCTTTCTCACTCAAAGCTTGTGCCACGTGGCCCTCCT
CTCGAAGACGTCCTCTGTCTACTACAGCCGAAGCTCCCCCCCCTCCCTTT
CCGGTTGCTTCCTCTCTGCGTCTTCACGATGCGACCACAACCAAAGAAGA
TGCATTGGTCGCGTGGCGCACACGCCGGGTCATAGCAGAAGTTCGACACG
ACCCTCAGAAACTGTTAATGCTCTTGGAAATGGAGGGAATGGACGCGTAC
AACGTCGTAATACTTGTTTCACGGTTGGCTCAGGCGTGCGAAGGGAAGAT
GGAGGCCACCACGGCCGTGCAAAGTGACCCGCGCTTTGCGCAGCTGGTAG
AACAAGTGTTGGGAGGGAAAGGCGGGAGGGTGGTCAAAGATATGAGTGAA
CTGCAGATGGACAGTGTGCGGGCCAGCCTTCGTCTTCTGGGTGTGGAAGG
CGCGTGAAAGCCTACGTTAATAGGGCGGGATGAAGAGCGAACACCGATGA
AACACCAAAGAATAAGTTGGTATAACCATTCGGTGGTATGGATAGTAAAT
GGGAGAAAAACTAATGCTTCACCTGGCGCAGTGTTATACAAAATTTCGAC
ATAATTTCAGATCAGTGTCAGCCAGCCAGCGCAGCACGCCGCTACTTTTT
GAAAATCTGACGGCAGAGAAGGCCGAGTCAAGCATTTAACACTGAAGAAT
GGTTTTCTTTGAGAACGCTGTGTCATGATGGGGAAGTTTCTGGTTGGGGA
AATGTCTGTCCATTTTACAGTCATTCCGACCACATTAACGCCGAAGGACC
ATTGCTGTCTTACGTGTGTAACTGCTTAGTAGAATTCATGGATTCTGTAA
TGCTCGTTGCACATTTAGACATGAAAGAAGAAAATGTGACGAGCACTGGA
CAAACCTGTGTCTGAACAAATAGACCTCAAGGGCGCCTCGAGGTGCGTAG
TTGATCGAGCATCCGCGAAACCATGTCATATTTGGGTAAATTATATTGCA
CAAGGGAGCCTATAACAGCCATGTATGTGGTGGCAAGGGCCGAAAAAGGT
CAAAAGATTGCGAGAATCTCATCACAAGGTAGCGTTTCCCGGACCAGCGA
ATGGAAGAGAAAGTGATGGCACCAGAAGAGAAAAAAATACGACAGAAATA
GCAAGCTACTGGTCCTTTTTACTGCTTCTTTTTGCACCTCTCCTTCCTTG
CCTGCATACTTTAGCCCTTCCCCTACTTCATGGCACCGGCTTTTAAGACG
TCAACCATATTGAAAACCTTTTTATCGGGACCGTGCTGCTGTGCCAGGTA
AGTGAGAGCGTCGACAGTACCCTCCGCGTAAATCCGCCGGCCAACTACGT
TGTGGCGAAATTGAAACTCCACACTGCAGAGAAATGGAAAGCCCAGGAA

protein sequence of rna627

>rna627-protein ID=rna627-protein|Name=rna627|organism=Nannochloropsis gaditana|type=polypeptide|length=605bp
MRFSLSLCLSLALPSIACTDFDFSSRKYPRRLKEALPCLDYVVVGAGNAG
AVVAARLSEDPAVRVLLLEEGDYSQDSGKSGTSQRKEWISKQISTPRHDY
RTWAMPALTEPLNTEANPALNNRSGLLVGPVMTGKALGGSTAINIGAYTR
PAPAYFDRWGLEHWGGEETTAYFRKLEDHEDINPEYGKNGPVHVERGDAQ
TMYSYLYEASVTMDPPLCSSSAGRLSYGLPQVYRAVQQGTRVDAYTAYLR
TEAEARKDNLIVRTGARVTRIIFDESMRATGVEYIYKDPGALHFRTGVAG
EDPRVGISRQREKAAHVTLQANAKREVILCAGVFFTPHLLLKSGLGPAAE
LEALGVPVVADLPGVGKHLMARTNVLFFFGNGSMVPEMNPFVLNNPATTD
QYDLERRGPYSLGALGIYSVVKGRKSEEDDYIMFMTDVIPEVAPRMLALG
CANLKVHGPGGQVLLDAFDPLEARHPRIQLNMAAAEEDRRAIRHCLRDVR
DMMAEPVMANLGFSETFPTERLVDNSEKALDEWISRGYTFYSWHATSTAR
MGDVLDSRLRVQGGVKGLRVVDASAVPNMIEAGPMATLYMLGERAADLIK
EDNQD

mRNA from alignment at CM002456.1:24501..26554-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna627 ID=rna627|Name=rna627|organism=Nannochloropsis gaditana|type=mRNA|length=2054bp|location=Sequence derived from alignment at CM002456.1:24501..26554- (Nannochloropsis gaditana)
ATGCGTTTCTCCTTGTCGCTATGCCTTAGCCTCGCGCTCCCATCTATAGC
ATGTACTGATTTCGACTTCTCCTCGCGAAAATATCCTCGTCGACTGAAAG
AAGCCTTACCATGTTTAGACTATGTAGTCGTCGGTGCCGGTAATGCTGGA
GCTGTTGTGGCAGCCCGTTTATCTGAAGACCCTGCTGTCCGCGTGCTCCT
CTTAGAGGAGGGTGACTACTCACAAGATAGCGGTAAAAGTGGAACAAGCC
AGCGCAAAGAGTGGATCTCCAAGCAGATCAGTACTCCACGTCACGACTAC
CGTACCTGGGCAATGCCAGCATTGACTGAACCATTGAATACCGAAGCCAA
TCCAGCTCTAAACAATCGCAGTGGCTTACTTGTGGGTCCTGTGATGACGG
GGAAAGCTTTGGGTGGATCAACAGCTATAAATATTGGGGCGTACACACGG
CCCGCACCAGCATATTTTGATCGGTGGGGACTTGAACACTGGGGCGGTGA
GGAAACCACCGCCTACTTTCGTAAGCTCGAGGACCATGAAGATATTAATC
CAGAATACGGAAAGAATGGACCGGTGCACGTGGAGCGCGGAGACGCCCAA
ACAATGTACTCCTACTTGTATGAAGCATCCGTCACCATGGATCCACCACT
ATGCAGCTCTTCGGCCGGTCGCCTGTCGTACGGTTTGCCGCAGGTTTATC
GAGCTGTCCAGCAGGGCACACGTGTGGATGCATACACTGCTTATCTGAGA
ACGGAAGCGGAGGCACGCAAGGACAACCTGATTGTGCGCACAGGTGCTCG
AGTTACACGGATTATTTTTGATGAATCGATGCGTGCGACAGGCGTTGAGT
ACATCTACAAGGATCCGGGTGCTTTGCACTTTCGGACCGGCGTTGCTGGA
GAGGACCCTCGTGTAGGCATAAGCAGGCAGAGAGAGAAAGCTGCTCATGT
GACTTTGCAAGCTAATGCCAAGCGGGAAGTAATTCTCTGCGCGGGTGTCT
TCTTCACTCCTCATCTTCTGCTCAAGTCGGGGTTGGGCCCTGCTGCAGAG
CTTGAGGCATTGGGGGTGCCCGTAGTTGCAGACCTGCCGGGGGTGGGCAA
GCACCTGATGGCTCGCACGAACGTCCTTTTCTTTTTCGGGAATGGAAGCA
TGGTGCCGGAAATGAATCCATTCGTCCTGAATAATCCAGCCACTACTGAT
CAGTATGATCTCGAGCGTCGGGGCCCCTACAGTCTTGGCGCCCTCGGCAT
CTATTCCGTTGTGAAAGGCCGCAAAAGTGAAGAAGACGACTACATTATGT
TTATGACGGATGTCATCCCTGAAGTGGCACCCCGCATGTTAGCTTTGGGC
TGCGCTAACCTCAAGGTCCATGGGCCAGGTGGGCAAGTGCTGCTTGACGC
TTTTGACCCCTTAGAGGCCAGGCATCCCCGCATTCAGCTTAACATGGCGG
CTGCCGAGGAAGATCGACGAGCGATCCGCCATTGCCTGCGAGATGTTCGG
GATATGATGGCCGAGCCGGTCATGGCCAACTTGGGATTTTCGGAAACGTT
TCCCACTGAGCGGCTGGTAGACAACTCAGAGAAAGCCTTAGACGAATGGA
TCAGCCGGGGCTACACGTTTTACAGTTGGCACGCTACCAGCACAGCAAGG
ATGGGCGACGTGCTTGATTCCCGCTTGCGTGTCCAGGGAGGCGTGAAGGG
TTTGCGGGTGGTGGACGCTAGCGCAGTGCCCAACATGATTGAGGCTGGAC
CCATGGCTACCTTGTACATGCTAGGGGAACGAGCCGCAGATCTTATCAAA
GAAGATAATCAGGATTGAATGGAAAGCTTCACACAAAACATTGGCATAGA
AAGGACCAAAGAAGGCGTCTTGAAATGAAATTGAAAATAAGCAAATGCAC
TAAGGATCAGGCACTTCGGGAAAAAAAGCGACGATTTAGCTACATCCTGC
TATTTAGTCACATATTGTAAAAATCATCCACCGTGTCCAGTTGTTTGATT
ACCTCTTCACATATGTTGCGTTTTCAAAAGATTCATTCTGTACACAAAAA
GCAA

Coding sequence (CDS) from alignment at CM002456.1:24501..26554-

>rna627 ID=rna627|Name=rna627|organism=Nannochloropsis gaditana|type=CDS|length=1818bp|location=Sequence derived from alignment at CM002456.1:24501..26554- (Nannochloropsis gaditana)
ATGCGTTTCTCCTTGTCGCTATGCCTTAGCCTCGCGCTCCCATCTATAGC
ATGTACTGATTTCGACTTCTCCTCGCGAAAATATCCTCGTCGACTGAAAG
AAGCCTTACCATGTTTAGACTATGTAGTCGTCGGTGCCGGTAATGCTGGA
GCTGTTGTGGCAGCCCGTTTATCTGAAGACCCTGCTGTCCGCGTGCTCCT
CTTAGAGGAGGGTGACTACTCACAAGATAGCGGTAAAAGTGGAACAAGCC
AGCGCAAAGAGTGGATCTCCAAGCAGATCAGTACTCCACGTCACGACTAC
CGTACCTGGGCAATGCCAGCATTGACTGAACCATTGAATACCGAAGCCAA
TCCAGCTCTAAACAATCGCAGTGGCTTACTTGTGGGTCCTGTGATGACGG
GGAAAGCTTTGGGTGGATCAACAGCTATAAATATTGGGGCGTACACACGG
CCCGCACCAGCATATTTTGATCGGTGGGGACTTGAACACTGGGGCGGTGA
GGAAACCACCGCCTACTTTCGTAAGCTCGAGGACCATGAAGATATTAATC
CAGAATACGGAAAGAATGGACCGGTGCACGTGGAGCGCGGAGACGCCCAA
ACAATGTACTCCTACTTGTATGAAGCATCCGTCACCATGGATCCACCACT
ATGCAGCTCTTCGGCCGGTCGCCTGTCGTACGGTTTGCCGCAGGTTTATC
GAGCTGTCCAGCAGGGCACACGTGTGGATGCATACACTGCTTATCTGAGA
ACGGAAGCGGAGGCACGCAAGGACAACCTGATTGTGCGCACAGGTGCTCG
AGTTACACGGATTATTTTTGATGAATCGATGCGTGCGACAGGCGTTGAGT
ACATCTACAAGGATCCGGGTGCTTTGCACTTTCGGACCGGCGTTGCTGGA
GAGGACCCTCGTGTAGGCATAAGCAGGCAGAGAGAGAAAGCTGCTCATGT
GACTTTGCAAGCTAATGCCAAGCGGGAAGTAATTCTCTGCGCGGGTGTCT
TCTTCACTCCTCATCTTCTGCTCAAGTCGGGGTTGGGCCCTGCTGCAGAG
CTTGAGGCATTGGGGGTGCCCGTAGTTGCAGACCTGCCGGGGGTGGGCAA
GCACCTGATGGCTCGCACGAACGTCCTTTTCTTTTTCGGGAATGGAAGCA
TGGTGCCGGAAATGAATCCATTCGTCCTGAATAATCCAGCCACTACTGAT
CAGTATGATCTCGAGCGTCGGGGCCCCTACAGTCTTGGCGCCCTCGGCAT
CTATTCCGTTGTGAAAGGCCGCAAAAGTGAAGAAGACGACTACATTATGT
TTATGACGGATGTCATCCCTGAAGTGGCACCCCGCATGTTAGCTTTGGGC
TGCGCTAACCTCAAGGTCCATGGGCCAGGTGGGCAAGTGCTGCTTGACGC
TTTTGACCCCTTAGAGGCCAGGCATCCCCGCATTCAGCTTAACATGGCGG
CTGCCGAGGAAGATCGACGAGCGATCCGCCATTGCCTGCGAGATGTTCGG
GATATGATGGCCGAGCCGGTCATGGCCAACTTGGGATTTTCGGAAACGTT
TCCCACTGAGCGGCTGGTAGACAACTCAGAGAAAGCCTTAGACGAATGGA
TCAGCCGGGGCTACACGTTTTACAGTTGGCACGCTACCAGCACAGCAAGG
ATGGGCGACGTGCTTGATTCCCGCTTGCGTGTCCAGGGAGGCGTGAAGGG
TTTGCGGGTGGTGGACGCTAGCGCAGTGCCCAACATGATTGAGGCTGGAC
CCATGGCTACCTTGTACATGCTAGGGGAACGAGCCGCAGATCTTATCAAA
GAAGATAATCAGGATTGA

Synonyms

Publications