EWM30046.1, cds627 (CDS) Nannochloropsis gaditana

Overview
NameEWM30046.1
Unique Namecds627
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:24737..26554 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30046.1
Productcholine dehydrogenase
Orig transcript idgnl|cribi|Naga_100225g10.3524.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:24737..26554 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0050660flavin adenine dinucleotide binding
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
Vocabulary: INTERPRO
TermDefinition
IPR000172GMC_OxRdtase_N
IPR012132GMC_OxRdtase
IPR007867GMC_OxRtase_C
Homology
BLAST of EWM30046.1 vs. NCBI_GenBank
Match: gi|585112676|gb|EWM30046.1| (choline dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 1248.42 bits (3229), Expect = 0.000e+0
Identity = 605/605 (100.00%), Postives = 605/605 (100.00%), Query Frame = 0
Query:    1 MRFSLSLCLSLALPSIACTDFDFSSRKYPRRLKEALPCLDYVVVGAGNAGAVVAARLSEDPAVRVLLLEEGDYSQDSGKSGTSQRKEWISKQISTPRHDYRTWAMPALTEPLNTEANPALNNRSGLLVGPVMTGKALGGSTAINIGAYTRPAPAYFDRWGLEHWGGEETTAYFRKLEDHEDINPEYGKNGPVHVERGDAQTMYSYLYEASVTMDPPLCSSSAGRLSYGLPQVYRAVQQGTRVDAYTAYLRTEAEARKDNLIVRTGARVTRIIFDESMRATGVEYIYKDPGALHFRTGVAGEDPRVGISRQREKAAHVTLQANAKREVILCAGVFFTPHLLLKSGLGPAAELEALGVPVVADLPGVGKHLMARTNVLFFFGNGSMVPEMNPFVLNNPATTDQYDLERRGPYSLGALGIYSVVKGRKSEEDDYIMFMTDVIPEVAPRMLALGCANLKVHGPGGQVLLDAFDPLEARHPRIQLNMAAAEEDRRAIRHCLRDVRDMMAEPVMANLGFSETFPTERLVDNSEKALDEWISRGYTFYSWHATSTARMGDVLDSRLRVQGGVKGLRVVDASAVPNMIEAGPMATLYMLGERAADLIKEDNQD 605
            MRFSLSLCLSLALPSIACTDFDFSSRKYPRRLKEALPCLDYVVVGAGNAGAVVAARLSEDPAVRVLLLEEGDYSQDSGKSGTSQRKEWISKQISTPRHDYRTWAMPALTEPLNTEANPALNNRSGLLVGPVMTGKALGGSTAINIGAYTRPAPAYFDRWGLEHWGGEETTAYFRKLEDHEDINPEYGKNGPVHVERGDAQTMYSYLYEASVTMDPPLCSSSAGRLSYGLPQVYRAVQQGTRVDAYTAYLRTEAEARKDNLIVRTGARVTRIIFDESMRATGVEYIYKDPGALHFRTGVAGEDPRVGISRQREKAAHVTLQANAKREVILCAGVFFTPHLLLKSGLGPAAELEALGVPVVADLPGVGKHLMARTNVLFFFGNGSMVPEMNPFVLNNPATTDQYDLERRGPYSLGALGIYSVVKGRKSEEDDYIMFMTDVIPEVAPRMLALGCANLKVHGPGGQVLLDAFDPLEARHPRIQLNMAAAEEDRRAIRHCLRDVRDMMAEPVMANLGFSETFPTERLVDNSEKALDEWISRGYTFYSWHATSTARMGDVLDSRLRVQGGVKGLRVVDASAVPNMIEAGPMATLYMLGERAADLIKEDNQD
Sbjct:    1 MRFSLSLCLSLALPSIACTDFDFSSRKYPRRLKEALPCLDYVVVGAGNAGAVVAARLSEDPAVRVLLLEEGDYSQDSGKSGTSQRKEWISKQISTPRHDYRTWAMPALTEPLNTEANPALNNRSGLLVGPVMTGKALGGSTAINIGAYTRPAPAYFDRWGLEHWGGEETTAYFRKLEDHEDINPEYGKNGPVHVERGDAQTMYSYLYEASVTMDPPLCSSSAGRLSYGLPQVYRAVQQGTRVDAYTAYLRTEAEARKDNLIVRTGARVTRIIFDESMRATGVEYIYKDPGALHFRTGVAGEDPRVGISRQREKAAHVTLQANAKREVILCAGVFFTPHLLLKSGLGPAAELEALGVPVVADLPGVGKHLMARTNVLFFFGNGSMVPEMNPFVLNNPATTDQYDLERRGPYSLGALGIYSVVKGRKSEEDDYIMFMTDVIPEVAPRMLALGCANLKVHGPGGQVLLDAFDPLEARHPRIQLNMAAAEEDRRAIRHCLRDVRDMMAEPVMANLGFSETFPTERLVDNSEKALDEWISRGYTFYSWHATSTARMGDVLDSRLRVQGGVKGLRVVDASAVPNMIEAGPMATLYMLGERAADLIKEDNQD 605          
BLAST of EWM30046.1 vs. NCBI_GenBank
Match: gi|1113396910|gb|OJW59818.1| (hypothetical protein BGO57_05005 [Sphingomonadales bacterium 63-6])

HSP 1 Score: 212.231 bits (539), Expect = 9.789e-58
Identity = 193/594 (32.49%), Postives = 271/594 (45.62%), Query Frame = 0
Query:   39 LDYVVVGAGNAGAVVAARLSEDPAVRVLLLEEGDYSQDSGKSGTSQRKEWISKQISTPRHDYRTWAMPALTEPLNTEANPALNNRSGLLVGPVMTGKALGGSTAINIGAYTRPAPAYFDRW---GLEHWGGEETTAYFRKLEDH-EDINPEYGKNGPVHVERGDAQT-MYSYLYEASVTMDPPLCSSSAGRLSYGLPQVYRAVQQGTRVDAYTAYLRTEAEARKDNLIVRTGARVTRIIFDESMRATGVEYIYKDPGALHFRTGVAGEDPRVGISRQREKAAHVTLQANAKREVILCAGVFFTPHLLLKSGLGPAAELEALGVPVVADLPGVGKHLMARTNVLFFFGNGSMVPEMNPFVLNNPATTD-------QYDLERRGPYSLGALGIYS-VVKGRKSEEDDYIMFMTDV-------IPEVA----PRMLALGCANLKVHGPGGQVLLDAFDPLEARHPRIQLNMAAAEEDRRAIRHCLRDVRDMMAEPVMANLGFSETFPTERLVDNSEKALDEWISRGYTFYSWHATSTARMG----DVLDSRLRVQGGVKGLRVVDASAVPNMIEAGPMATLYMLGERAADLIKEDNQ 604
             DY+VVGAG+AG V+A RLSEDPA RVLLLE G         G+ +R +     ++ P    + W  P LT    +E  P L  R      PV  GK LGG++++N     R     +D W   GL  WG  +   YFRKLE H     P +G  GP+ V+   A + + +   EA+  M  P+     G  + G       ++ G R  A  AYLR      + NL +RT A  TRI+FD    ATG+ ++  +                       EK AH T      REVIL  G   +P LLL SG+GPA EL  +G+PV+ D P VG +LM         G G  +    P         D       ++ + ++ P+    L I + V  G   +  D  + +  +        P +A    PRM A+   N       G + L A DP    HPRI+ N+ +AEEDR  +    R +R ++A+P +A++  +   P E   ++ E  L     R     ++H + T RMG     VLD  LRV  GV GLRVVDAS  P++        + M+ ERAAD IK  ++
Sbjct:    4 FDYIVVGAGSAGCVMANRLSEDPACRVLLLEAG---------GSDRRMD-----VTIPLAVSKLWPNPDLTWGFFSEEEPELEGRRL----PVARGKMLGGTSSLNGMMAIRGHRRDYDGWRDSGLPGWGWNDVLPYFRKLESHWRGDTPMHGGKGPLCVQPHPAPSPLMANAVEAARAMGFPITMDFNGERTDGFGMPDFTIKDGRRHSAADAYLRPALS--RPNLEIRTHALATRILFD-GKHATGLAWMQGN----------------------EEKQAHAT------REVILSGGAINSPQLLLLSGIGPAGELAEMGIPVLHDSPDVGGNLMDHP------GAGMELDLAPPLAFEKQLRLDRLMLSGLRWLMRQKSPFGAPPLAISANVATGADPDLVDLHILLIPLAMESRVWFPGIAKPFGPRMGAMWSLNYPKS--RGWLKLAAPDPRA--HPRIRFNLLSAEEDRAEMMRGYRTLRQLLAQPALADVTGAIRRP-EVAPESDEDVLA--YVRATAATAYHPSGTCRMGSDERSVLDGELRVN-GVDGLRVVDASIFPSLPGGNTNLPVIMVAERAADFIKASHR 534          
BLAST of EWM30046.1 vs. NCBI_GenBank
Match: gi|492479379|ref|WP_005859391.1| (choline dehydrogenase [Sagittula stellata] >gi|126708727|gb|EBA07783.1| choline dehydrogenase [Sagittula stellata E-37])

HSP 1 Score: 211.075 bits (536), Expect = 2.651e-57
Identity = 185/584 (31.68%), Postives = 268/584 (45.89%), Query Frame = 0
Query:   40 DYVVVGAGNAGAVVAARLSEDPAVRVLLLEEGDYSQDSGKSGTSQRKEWISKQ---ISTPRHDYRTWAMPALTEPLNTEANPALNNRSGLLVGPVMTGKALGGSTAINIGAYTRPAPAYFDRW---GLEHWGGEETTAYFRKLEDHEDINPE-YGKNGPVHVER-GDAQTMYSYLYEASVTMDPPLCSSSAGRLSYGLPQVYRAVQQGTRVDAYTAYLRTEAEARKDNLIVRTGARVTRIIFDESMRATGVEYIYKDPGALHFRTGVAGEDPRVGISRQREKAAHVTLQANAKREVILCAGVFFTPHLLLKSGLGPAAELEALGVPVVADLPGVGKHLMARTNVLFFFGNGSMVPEMNPFVLNNPA-TTDQYDLERRGPYSLGALGIYSVVKGRKS-EEDDYIMFMTDV-------IPEVAPRMLALGCANLKVHGPG--GQVLLDAFDPLEARHPRIQLNMAAAEEDRRAIRHCLRDVRDMMAEPVMANLGFSETFPTERLVDNSEKALDEWISRGYTFYSWHATSTARMGD----VLDSRLRVQGGVKGLRVVDASAVPNMIEAGPMATLYMLGERAADLIK 600
            DY+VVGAG +G V+AARLSEDPA +VLLLE          +G   R  W+      +   +H    W          TE  P L+ R   L      G+ LGGS AIN     R  P+ ++ W   GL  W  E+   YFR+LE H   +   +G++GP+ + R  D Q +Y    +A++    P         + G+ ++  A+  G R      YL   A AR  NL + TGAR  R++ D + RA+GVE+++ D               RV              QA+A REVILCAG + +PHLLL SG+GPA  L  +GVP+  DLPGVG +L    N +  +        +N    +  A +  ++ + R+G +        + ++ R+  +  D  + +  +        P + PR        + +  P   G+V L + DP +A  PRIQLN+    +D R +   +R  R +   P M  +   E  P  +L  ++E A      R       H   T  MG+    V DS L+V  GV GLRVVDAS +P+           ML ERAADLI+
Sbjct:    5 DYIVVGAGPSGCVLAARLSEDPACKVLLLE----------AGPPDRHPWLRMPFAFMKMAQHRRYIWR-------FRTEPEPGLDGRRVDL----RRGRTLGGSAAINGMICARGHPSDWNGWAQSGLAGWSYEDVLPYFRRLESHWSPDASVHGQSGPIGITRVDDPQMLYPAFRDAALEAGWPEREDYLAGETEGISRIQLAIADGERQTPARRYL-GPARARP-NLTILTGARGLRVLRDGT-RASGVEFLHHD---------------RVE-------------QAHADREVILCAGAYMSPHLLLLSGIGPADHLAEMGVPLWTDLPGVGGNLSEHPNFVMSWETRQPETLLNALRWDRAALSVAKWHISRQGTFVNNGATAVAFLRSREGLDRPDVQLILMPIDGSARTWFPALRPRTRHCLSVRVGILYPQSRGRVSLASSDPRDA--PRIQLNLMKETDDVRTLTAAIRATRAIFETPAMQKVVKCEISPGRQLESDTEIAQ---AIRENAHVRQHPLGTCAMGNGPLAVTDSTLKVH-GVDGLRVVDASVLPSEPGGNTNLPSIMLAERAADLIR 530          
BLAST of EWM30046.1 vs. NCBI_GenBank
Match: gi|1176097340|ref|XP_020619304.1| (choline dehydrogenase, mitochondrial-like [Orbicella faveolata])

HSP 1 Score: 211.075 bits (536), Expect = 8.320e-57
Identity = 191/623 (30.66%), Postives = 276/623 (44.30%), Query Frame = 0
Query:    1 MRFSLSLCLSLALPSIACTDFDFSSRK---YPRRLKEALP---CLDYVVVGAGNAGAVVAARLSEDPAVRVLLLEEGDYSQDSGKSGTSQRKEWISKQISTPRHDYRTWAMPALTEPLNTEANPALNNRSGLLVGPVMTGKALGGSTAINIGAYTRPAPAYFDRW---GLEHWGGEETTAYFRKLEDHEDINPEY-GKNGPVHVERG-DAQTMYSYLYEASVTMDPPLCSSSAGRLSYGLPQVYRAVQQGTRVDAYTAYLRTEAEARKDNLIVRTGARVTRIIFDESMRATGVEYIYKDPGALHFRTGVAGEDPRVGISRQREKAAHVTLQANAKREVILCAGVFFTPHLLLKSGLGPAAELEALGVPVVADLPGVGKHLMARTNVLFFFGNGSMVPEMNPFVLNNPATTD-QYDLERRGPYSLGALGIYSVVKGRK--SEEDDYIMFMTDVIPEVAPRMLALGCANLKVH----GPGGQVLLDAFDPLEARHPRIQLNMAAAEEDRRAIRHCLRDVRDMMAEPVMANLGFSETFPTERLVDNSEKALDEWISRGYTFYSWHATSTARMG------DVLDSRLRVQGGVKGLRVVDASAVPNMIEAGPMATLYMLGERAADLI 599
             R+SL L        I+    D++SR     P+  K  +      DY++VG G+AG V+A RLS++P ++VLLLE G        S   Q    +S  + +  H++             +E    L NR+  +  P   G+ LGGS++IN   Y R     FDRW   G   W   +   YF+K E +E    +Y G +GP+ V RG  + T++     A      P      G    G+ ++ R V  G R    TAYL+   E  + NL+  T A   R++FD+  +A GVEY                            +A + T +  A REVI+C GVF +P LL+ SG+G   +L+ALG+PVVA+LPGVGK+L     V   F     V   + F L+N      Q+ L + G  +         VK     S  D  + F+  V+ E     L      L V        G V L + DPL   HP IQ N    + DRR +R C+R  R ++++         E  P       +E  +D ++ R Y    +H   T +MG       V+D   RV  GV  LRVVDAS +P+++     A   M+ E+AAD I
Sbjct:    4 FRYSLRLT---HRAQISRKSLDWNSRASQVQPKSFKSTISFSSTHDYIIVGGGSAGCVLANRLSDNPDLKVLLLEAGP----KDNSWRIQMPAAVSYNLDSDSHNWY----------YTSEPQQNLQNRT--MYHP--RGRVLGGSSSINAMIYARGHAFDFDRWDREGATGWSYADCLPYFKKSETYELGASQYRGGSGPLRVSRGTSSNTLHEVFLAAGTEAGYPFTDDFNGYQQEGVGRLDRTVHDGKRWSTATAYLKPALE--RSNLVTETRALANRVLFDKD-KAIGVEY----------------------------RAGNSTKRVRASREVIICGGVFNSPQLLMLSGIGDEVDLKALGIPVVANLPGVGKNLQDHVQVYVQFECLQPVTLNSAFKLHNKVLAGAQWFLFKNGTCATNHFESGGFVKSDPGVSHPDIALQFVPVVMREAGESDLIQHGYQLCVETLKPSSRGFVKLRSRDPLT--HPVIQPNYLTHDSDRRLMRTCVRIARHVLSQKAFEPYRGKELRPGSTC--KTEDDIDSFV-REYAKTDYHPCGTCKMGADDDPTAVVDKNTRVI-GVDNLRVVDASVMPSVVSGNLNAATIMIAEKAADCI 568          
BLAST of EWM30046.1 vs. NCBI_GenBank
Match: gi|1095256580|emb|SEN87031.1| (choline dehydrogenase [Rhodospirillales bacterium URHD0017])

HSP 1 Score: 205.682 bits (522), Expect = 3.315e-55
Identity = 192/588 (32.65%), Postives = 272/588 (46.26%), Query Frame = 0
Query:   40 DYVVVGAGNAGAVVAARLSEDPAVRVLLLEEGDYSQDSGKSGTSQRKEWISKQISTPRHDYRTWAMPALTEPLNTEANPALNNRSGLLVGPVMTGKALGGSTAINIGAYTRPAPAYFDRW---GLEHWGGEETTAYFRKLEDHEDINPEY-GKNGPVHVERGDAQ-TMYSYLYEASVTMDPPLCSSSAGRLSYGLPQVYRAVQQGTRVDAYTAYLRTEAEARKDNLIVRTGARVTRIIFDESMRATGVEYIYKDPGALHFRTGVAGEDPRVGISRQREKAAHVTLQANAKREVILCAGVFFTPHLLLKSGLGPAAELEALGVPVVADLPGVGKHLMARTNVLFFFGNGSMVPEMNPFVLNNP---ATTDQYDLERRGPYSLGALGIY--SVVKGRKSEE--DDYIMFMTDVIPE-----VAPRML-ALGCANLKVHGPG-GQVLLDAFDPLEARHPRIQLNMAAAEEDRRAIRHCLRDVRDMMAEPVMANLGFSETFPTERLVDNSEKALDEWISRGYTFYSWHATSTARMG----DVLDSRLRVQGGVKGLRVVDASAVPNMIEAGPMATLYMLGERAADLIKEDNQ 604
            D++V GAG+AG  VA RLSED   RVLLLE G   +DS          W    I  P   ++T+  P +    ++E  P LNNR  ++  P   GK LGG+++IN   Y R   A +D W   G E W  +    YF++ ED E    E+ G  GP+ V     Q T+   ++EA++    P      GR   G+      + +  R  +  AYLR EA+ RK NL + T A  TR++  E+ RA GVE  Y+ P  L                            A A REVI+  GV+ +P LL+ SG+GPA  L   G+ V+ D+PGVG +L    N    +     V  MN  + + P       QY L R GP  L ++G+Y  ++V+  K  E  D  I      I E     V P+   A G + + +   G G V L + DPL A  P I+ N   +  D  A+   LR  RD+  +  +      E  P   + D  E  L   I R     + H   T RMG    DV+D +LRV  G+  LRV DAS +P+++     A   M+GE+ AD++++  Q
Sbjct:    7 DFIVTGAGSAGCAVAGRLSEDGRFRVLLLEAG--PKDS--------YPW----IHIPLGYHKTFNNPRVNWMFDSEPEPELNNR--IMYQP--RGKVLGGTSSINGMVYMRGNAADYDEWRQRGCEGWDYDSVLPYFKRAEDQERGPDEFHGVGGPLKVSDHRWQPTLAKAMHEAALQAGIPDNPDFNGRTQEGVGYYQTTINRARRWSSARAYLR-EAKTRK-NLTIATSAHATRVLI-ENGRAVGVE--YRTPDGLK--------------------------TARANREVIVSGGVYGSPQLLMLSGVGPAEHLRKHGIAVIKDMPGVGSNLHDHFNTYVAYKCAQPV-TMNDLINSFPRRILAGMQYALGRTGP--LASMGLYVGALVRSDKRLERPDLQINMFAWAIKERNRHGVVPQPFSAFGLSPVHLRPDGRGTVRLKSADPLAA--PEIRFNFLKSSNDWNAMIQGLRICRDIGKQAALKPFVVEEILPGAGVTD--EPGLRAHI-RANGVSNLHPVGTCRMGRAVEDVVDPQLRVH-GIAALRVADASIMPSIVAGNTNAPSIMIGEKCADMVRQAAQ 536          
BLAST of EWM30046.1 vs. NCBI_GenBank
Match: gi|522187021|ref|WP_020695569.1| (hypothetical protein [Reyranella massiliensis])

HSP 1 Score: 203.371 bits (516), Expect = 2.045e-54
Identity = 183/585 (31.28%), Postives = 268/585 (45.81%), Query Frame = 0
Query:   39 LDYVVVGAGNAGAVVAARLSEDPAVRVLLLEEGDYSQDSGKSGTSQRKEWISKQISTPRHDYRTWAMPALTEPLNTEANPALNNRSGLLVGPVMTGKALGGSTAINIGAYTRPAPAYFDRW---GLEHWGGEETTAYFRKLEDHE-DINPEYGKNGPVHVERGDAQ-TMYSYLYEASVTMDPPLCSSSAGRLSYGLPQVYRAVQQGTRVDAYTAYLRTEAEARKDNLIVRTGARVTRIIFDESMRATGVEYIYKDPGALHFRTGVAGEDPRVGISRQREKAAHVTLQANAKREVILCAGVFFTPHLLLKSGLGPAAELEALGVPVVADLPGVGKHLMARTNVLFFFGNGSMVPEMNPFVLNNP---ATTDQYDLERRGPYSLGALGIY---SVVKGRKSEEDDYIMFMTDVIPEVAPR-------MLALGCANLKVHGPG-GQVLLDAFDPLEARHPRIQLNMAAAEEDRRAIRHCLRDVRDMMAEPVMANLGFSETFPTERLVDNSEKALDEWISRGYTFYSWHATSTARMG----DVLDSRLRVQGGVKGLRVVDASAVPNMIEAGPMATLYMLGERAADLIK 600
             D++V GAG+AG  VA RLSED    VLLLE          +G S    WI      P   ++T+  P +    ++E  P LNNR  ++  P   GK LGG+++IN   Y R   A +D W   G E W  +    YF++ ED+E   +  +G  GP+ V+    Q T+   +++A+V    P      G    G+      + +  R  +  AYLR EA+ R+ NL + T A  TR++  E+ RA GVEY  + P  L                            A A REVI+  GV+ +P LLL SGLGPA  L+  G+ VV D+PGVG HL    N    +   S    MN    + P        Y L R GP  L ++G+Y    V   ++ E  D  + M     +   R         A G + + +   G G V L + DP+ A  P I+ N      D  A+   +R  R++  +P +      E  P   + +  E AL +++ R     + H   T RMG    DV+D +L+V  G+ GLRV DAS +PN++     A   M+GE+ AD+++
Sbjct:    6 FDFIVTGAGSAGCAVAGRLSEDGRYSVLLLE----------AGPSDTYPWIH----VPLGYHKTFNNPKVNWMFDSEPEPELNNR--IMYQP--RGKVLGGTSSINGMVYMRGNAADYDEWRQRGCEGWDYDSVLPYFKRAEDNERGADAFHGTGGPLKVQDHRWQPTLAKAMHDAAVEAGIPANPDFNGATQEGVGYYQTTINKARRWSSARAYLR-EAKKRR-NLTIATSAHATRVLI-ENGRAVGVEY--RTPAGLQ--------------------------TARANREVIVSGGVYGSPQLLLLSGLGPAEHLKQHGIDVVRDMPGVGSHLHDHFNTYIAY-KCSQAVTMNDLANSLPRRLLAGAMYALGRTGP--LASMGLYVGAMVRSDKRLERPDLQINMFAWAIKTRDRNGVQAQPFSAFGLSPVHLRPDGRGTVRLKSADPMAA--PEIRFNFLRTANDWNAMLQGMRLCREIGRQPALKPFVVEEIMPGPGVAE--EPALRDYL-RSTGVSNLHPVGTCRMGHGPDDVVDPQLKVH-GIAGLRVADASIMPNIVAGNTNAPSIMIGEKCADMVR 532          
BLAST of EWM30046.1 vs. NCBI_GenBank
Match: gi|517734682|ref|WP_018904890.1| (choline dehydrogenase [Variovorax paradoxus])

HSP 1 Score: 202.986 bits (515), Expect = 3.611e-54
Identity = 184/581 (31.67%), Postives = 258/581 (44.41%), Query Frame = 0
Query:   40 DYVVVGAGNAGAVVAARLSEDPAVRVLLLEEGDYSQDSGKSGTSQRKEWISKQISTPRHDYRTWAMPALTEPLNTEANPALNNRSGLLVGPVMTGKALGGSTAINIGAYTRPAPAYFDRW---GLEHWGGEETTAYFRKLEDHE-DINPEYGKNGPVHVERGDA-QTMYSYLYEASVTMDPPLCSSSAGRLSYGLPQVYRAVQQGTRVDAYTAYLRTEAEARKDNLIVRTGARVTRIIFDESMRATGVEYIYKDPGALHFRTGVAGEDPRVGISRQREKAAHVTLQANAKREVILCAGVFFTPHLLLKSGLGPAAELEALGVPVVADLPGVGKHLMARTNVLFFFGNGSMVPEMNPFVLNNPATT--------DQYDLERRGPYSLGALGIYSVVKGRKSEE--DDYIMFMTDVIPEVA--PRMLALGCANLKVHGPGGQVLLDAFDPLEARHPRIQLNMAAAEEDRRAIRHCLRDVRDMMAEPVMANLGFSETFPTERLVDNSEKALDEWISRGYTFYSWHATSTARMGD----VLDSRLRVQGGVKGLRVVDASAVPNMIEAGPMATLYMLGERAADLI 599
            D++VVGAG+AGA+VA+RLSED    VLLLE G +           R  WI      P    +T     +     TE  P L +RS  L      GK +GGS AIN   + R     FD W   G + WG  +   YFR+ EDH     P +GK GPV V +      +  +   A +           G    G+      V++G R ++    LR  A  R+ NL + T A+V RI+F E   A GV Y                +D R    R R           A REV+LC+G   TP LL+ SG+GP A+L+A  +PVVA    VG++L     +        +    +P  +N+   +         ++  +R+GP +  A       + R+SE   D     M   +P +   P   +    ++    P  +  ++  D      P I  N  A EEDR+     LR VR ++A P M  +  SE +   + V   E+ LD   SR  T Y  H   T RMG     V+D+ LRV+ GVKGLR+ DAS +P +      AT  M+GE+AADLI
Sbjct:   11 DFIVVGAGSAGAIVASRLSEDGRYSVLLLEAGGWD----------RNPWIH----IPLGVGKTITNKKVNWAFQTEPVPHLGDRSVYLA----CGKVVGGSGAINGMVHVRGQREDFDGWQEAGCDGWGWSDVLPYFRRSEDHYLGDTPLHGKGGPVSVTKSRTPSVLCDHFIAAGINAGLERNDDFNGEKQDGVGVYDHTVRRGLRSNSAIGALR--AAKRRPNLRIETRAQVERILF-EGRTAVGVTY----------------QDARGNSHRVR-----------ASREVVLCSGALNTPKLLMLSGVGPMAQLQAHHLPVVAQSEEVGRNLQDHLAIRV------VCKTRDPITVNDELRSWRKRLLMGARFVFQRQGPLTFAAAQAGMFFRTRESEPQVDAQAFLMPFSVPGIGQYPHPFSAFTVSVTQSWPSSRGRVELRDANPRTPPTIHPNHLATEEDRQFFVRALRKVRAVLATPPMDGV-VSEEYLPGKAVTTDEQILDYVRSRSNTIY--HPCGTCRMGSDPGAVVDAALRVR-GVKGLRIADASIMPRITSGNINATCLMIGEKAADLI 533          
BLAST of EWM30046.1 vs. NCBI_GenBank
Match: gi|1133688281|ref|WP_076074029.1| (choline dehydrogenase [Sphingopyxis granuli] >gi|1133385993|gb|APW71988.1| choline dehydrogenase [Sphingopyxis granuli])

HSP 1 Score: 201.83 bits (512), Expect = 1.230e-53
Identity = 196/594 (33.00%), Postives = 262/594 (44.11%), Query Frame = 0
Query:   40 DYVVVGAGNAGAVVAARLSEDPAVRVLLLEEGDYSQDSGKSGTSQRKEWISK-QISTPRHDYRTWAMPALTEPLNTEANPALNNRSGLLVGPVMTGKALGGSTAINIGAYTRPAPAYFDRW---GLEHWGGEETTAYFRKLEDHEDINPEY-GKNGPVHVERGDAQTMYSY---LYEASVTMDPPLCSSSAGRLSYGLPQVYRAVQQGTRVDAYTAYLRTEAEARKDNLIVRTGARVTRIIFDESMRATGVEYIYKDPGALHFRTGVAGEDPRVGISRQREKAAHVTLQANAKREVILCAGVFFTPHLLLKSGLGPAAELEALGVPVVADLPGVGKHLMARTNVLFFFGNGSMVPEMNPFV--LNNPATTDQYDLERRGPYSLGALGIYSVVKGRKSEEDDYIMFMTDVIPEVAPRMLALG----CANLKVHGPG-------------GQVLLDAFDPLEARHPRIQLNMAAAEEDRRAIRHCLRDVRDMMAEPVMANLGFSETFPTERLVDNSEKALDEWISRGYTFYSWHATSTARMGD----VLDSRLRVQGGVKGLRVVDASAVPNMIEAGPMATLYMLGERAADLIKED 602
            DYV+VGAG+AG V+A RLS  P  RV+LLE G   +    +G     +W+S   I  P    +T A P +     TE +P+  NR    V     GK LGG+++IN   Y R  P  +D W   G   W  E+   YFR+ ED E+   E+ G  GP+HV  GD +  ++    L +A      P      G    G     +  + G R  A  AYL       + NL VRT A   RI+F E  RA GVEY     GA+H                          +  A+RE+IL  G   +P LL  SG+G A+ L ALG+  V   P VG++L     V   F     V  +N     +       +Y L RRG  +  A  + +  K R   E   I F   ++P  A  + A+G     A      PG             G V + + DP +  HP I  N  A  EDR      LR  R + ++P +     SE  P      ++E  LD   S G + Y  H   T RMGD    VLD RLRV+ GV+GLRV DAS +P +I     A   M+GE+AAD+I  D
Sbjct:    7 DYVIVGAGSAGCVLANRLSARPDDRVVLLEAGGDDRPHRNAG-----QWLSNLMIHVPAGYAQTLADPKVNWNFRTEPDPSTGNR----VYSWPRGKVLGGTSSINGMIYVRGQPQDYDHWRQLGCTGWSWEDVLPYFRRAEDQENGEDEWHGVGGPLHV--GDQRERFAVGEALLDACQQAGIPRRDDINGAEQEGATWYQQTTRNGRRCSAAVAYLHPVMT--RPNLDVRTNALALRILF-EGGRAVGVEYSAH--GAIH--------------------------RIRARREIILAGGAINSPQLLQLSGIGDASLLSALGIRPVFHSPQVGRNLQDHFGVATAFRLRPGVKSVNELTQGIRLAGQIARYALRRRGLLTFAAAAVGAFCKSRPELETPDIQF--HILPATAD-LAAMGRKRFIAMTLERQPGMTFSAYHMRPQSRGSVTIRSSDPRD--HPAIAPNYLAEAEDRSVTVQGLRWARAIASQPALRPYIESELRPGAGTETDAE-LLDYARSSGTSLY--HPVGTCRMGDDALAVLDPRLRVR-GVEGLRVADASIMPRLISGNTNAPAIMIGEKAADMILAD 549          
BLAST of EWM30046.1 vs. NCBI_GenBank
Match: gi|522172351|ref|WP_020680900.1| (choline dehydrogenase [Marinobacterium rhizophilum])

HSP 1 Score: 201.83 bits (512), Expect = 1.309e-53
Identity = 182/581 (31.33%), Postives = 260/581 (44.75%), Query Frame = 0
Query:   40 DYVVVGAGNAGAVVAARLSEDPAVRVLLLEEGDYSQDSGKSGTSQRKEWISKQISTPRHDYRTWAMPALTEPLNTEANPALNNRSGLLVGPVMTGKALGGSTAINIGAYTRPAPAYFDRW---GLEHWGGEETTAYFRKLEDHEDINPEY-GKNGPVHVERGD--AQTMYSYLYEASVTMDPPLCSSSAGRLSYGLPQVYRAVQQGTRVDAYTAYLRTEAEARKDNLIVRTGARVTRIIFDESMRATGVEYIYKDPGALHFRTGVAGEDPRVGISRQREKAAHVTLQANAKREVILCAGVFFTPHLLLKSGLGPAAELEALGVPVVADLPGVGKHLMARTNVLFFFGNGSMVPEMNPFVLNNPATTDQYDLERRGPYSLGALGIYSVVKGRKSEEDDYIMFMTDVIPEVAPRMLAL-GCANLKVHG---------PGGQVLLDAFDPLEARHPRIQLNMAAAEEDRRAIRHCLRDVRDMMAEPVMANLGFSETFPTERLVDNSEKALDEWISRGYTFYSWHATSTARMGD----VLDSRLRVQGGVKGLRVVDASAVPNMIEAGPMATLYMLGERAADLIK 600
            DY+++GAG+AG V+A R+SEDPA  VLLLE G     S +S   Q     S  ++T ++++R   +P           P LN+R   +  P   GK LGGS++IN   Y R     FD W   G + WG +    YFRK E  +    EY G +GP+H   G+  A  +Y    +A             G++  G   ++  V+ G R     AYLR      + NL V T A   RII D   RA+GVEY                          R  + H T+  N  REV+L AG   +PHLL  SG+GP   L   G+ V+ DLPGVG++L     +   F     +   +   L + A      L R+    LGA   +      +SE     +   DV     P  +   G A +K HG         P  +  + A  P    HP IQ N    EEDR   R C+R  R+++ +P M      E  P  ++  + E  +D ++ R     ++H   T +MG+    V+DS+LR+  G+ GLRV+D+S  P        A   ML ERA+DL++
Sbjct:    6 DYIIIGAGSAGCVLANRMSEDPATSVLLLESGG----SDRSVIIQMPTAFSMPMNTKKYNWRYETVP----------EPHLNDRR--VHCP--RGKVLGGSSSINGLVYIRGHACDFDEWESLGAKGWGYQSCLPYFRKAETLQLGGDEYRGDSGPLHTNNGNNMANPLYGAFVDAGEQAGYIKTRDCNGQMQEGFGPMHMTVKNGVRWSTANAYLRPAMG--RPNLTVITHAMTRRIILD-GKRASGVEY-------------------------SRAGSTH-TVHCN--REVLLSAGPIGSPHLLQLSGIGPKDVLREAGIEVLHDLPGVGENLQDHAEIYIQFKCKQPITLNSKMDLLSKALIGARWLLRKD--GLGATNHFESCGFIRSEAG---LKWPDVQFHFLPAAMRYDGNAPIKGHGFMVLTGPNKPKSRGHVRAVSPDPEVHPAIQFNYLEREEDREGFRKCVRLTREIIGQPAMDAYNDGEIAPGPQVQTDEE--IDAFV-RDNLESTYHPCGTCKMGEDEMAVVDSQLRLH-GIAGLRVIDSSVFPTETNGNLNAPTIMLAERASDLVR 528          
BLAST of EWM30046.1 vs. NCBI_GenBank
Match: gi|1184557542|ref|WP_085124557.1| (choline dehydrogenase [Tistlia consotensis] >gi|1182742909|emb|SMF53792.1| choline dehydrogenase [Tistlia consotensis USBA 355])

HSP 1 Score: 201.06 bits (510), Expect = 1.820e-53
Identity = 189/589 (32.09%), Postives = 270/589 (45.84%), Query Frame = 0
Query:   40 DYVVVGAGNAGAVVAARLSEDPAVRVLLLEEGDYSQDSGKSGTSQRKEWISKQISTPRHDYRTWAMPALTEPLN---------TEANPALNNRSGLLVGPVMTGKALGGSTAINIGAYTRPAPAYFDRW---GLEHWGGEETTAYFRKLEDHEDINPEY-GKNGPVHVERGDAQTMYSYLY-EASVTMDPPLCSSSAGRLSYGLPQVYRAVQQGTRVDAYTAYLRTEAEARKDNLIVRTGARVTRIIFDESMRATGVEYIYKDPGALHFRTGVAGEDPRVGISRQREKAAHVTLQANAKREVILCAGVFFTPHLLLKSGLGPAAELEALGVPVVADLPGVGKHLMARTNVLFFFGNG---SMVPEMNPFVLNNPATTDQYDLERRGPYSLGALGIYSVVKGRKSEEDDYIMFMTDVIPEVAPRMLALGCANLKVH-GP-----GGQVLLDAFDPLEARHPRIQLNMAAAEEDRRAIRHCLRDVRDMMAEPVMANLGFSETFPTERLVDNSEKALDEWISRGYTFYSWHATSTARMGDVLDSRLRVQG-----GVKGLRVVDASAVPNMIEAGPMATLYMLGERAADLIK 600
            DYV+VGAG+AG V+AARL+EDP V VLLLE G    D G          +S QI  P          A  EPL          +E  P ++NR   ++ P   GK LGGS++IN  AY R     +DRW   GL +W   +   YFR+ + HE    EY G +GP+ V  GD  T  S  + EA       +     G    G+ ++ +   +G R  A   YLR  A AR  NL V T A+  RI+F E  RA GV+Y+                D R  ++R             A REVIL  G   +PHLLL SG+GPA +L  LG+ VVA+LPGVG++L     +   +      S+ P + P+  N      ++   RRGP +     +   ++ R   E   + +    I               + H GP      G++ LD+ D  +A  PR   N    E DR+ +R  +R  R++  +     L   E  P  R   ++E  +D ++ R +   ++H + T +MG   DS   V G     G++GLRVVDAS +P++      A   ML E+ +D I+
Sbjct:    7 DYVIVGAGSAGCVLAARLTEDPQVSVLLLEAG--GPDKGL---------MSWQIHMPL---------AFAEPLKGTRYNWAFESEPEPFMDNRR--IIQP--RGKVLGGSSSINGMAYVRGHARDYDRWAQSGLSNWSYADCLPYFRRAQSHEFGADEYRGDSGPLKVSAGDVTTPLSKAWIEAGRQAGYFITEDMNGYRQEGIGRMDQTSWKGERWSAAKGYLRP-AMARP-NLTVVTRAQSRRIVF-EGRRAVGVDYV---------------ADGRQQVAR-------------AGREVILSGGAIGSPHLLLLSGVGPADQLRDLGIEVVAELPGVGENLQDHLEIYVQYAATQPVSLYPLLKPW--NKLRVGAEWLFLRRGPGTSNQFEVGGFIRSRAGIEHPNLQYHFLPIAITYAGTAPAAGHGFQAHVGPMRPTSRGRLWLDSADWRQA--PRFVFNYNETENDRQEMRDAVRLTREIFRQKAFDGLRGEELAPGPRAQSDAE--IDAFV-REHGESAYHPSCTCKMGPAGDSMAVVDGEGRVHGLEGLRVVDASIMPSIPSGNLNAPTIMLAEKLSDAIR 533          
The following BLAST results are available for this feature:
BLAST of EWM30046.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112676|gb|EWM30046.1|0.000e+0100.00choline dehydrogenase [Nannochloropsis gaditana][more]
gi|1113396910|gb|OJW59818.1|9.789e-5832.49hypothetical protein BGO57_05005 [Sphingomonadales... [more]
gi|492479379|ref|WP_005859391.1|2.651e-5731.68choline dehydrogenase [Sagittula stellata] >gi|126... [more]
gi|1176097340|ref|XP_020619304.1|8.320e-5730.66choline dehydrogenase, mitochondrial-like [Orbicel... [more]
gi|1095256580|emb|SEN87031.1|3.315e-5532.65choline dehydrogenase [Rhodospirillales bacterium ... [more]
gi|522187021|ref|WP_020695569.1|2.045e-5431.28hypothetical protein [Reyranella massiliensis][more]
gi|517734682|ref|WP_018904890.1|3.611e-5431.67choline dehydrogenase [Variovorax paradoxus][more]
gi|1133688281|ref|WP_076074029.1|1.230e-5333.00choline dehydrogenase [Sphingopyxis granuli] >gi|1... [more]
gi|522172351|ref|WP_020680900.1|1.309e-5331.33choline dehydrogenase [Marinobacterium rhizophilum... [more]
gi|1184557542|ref|WP_085124557.1|1.820e-5332.09choline dehydrogenase [Tistlia consotensis] >gi|11... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna627rna627Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications