rna6269, rna6269 (mRNA) Nannochloropsis gaditana

Overview
Namerna6269
Unique Namerna6269
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length834
Alignment locationCM002468.1:137370..137839 +

Link to JBrowse

Properties
Property NameValue
ProductPeptidase S8, subtilisin-related protein
Orig transcript idgnl|cribi|Naga_103421g1.3764.mrna
Orig protein idgnl|cribi|Naga_103421g1.3764
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:137370..137839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103421g1gene6062Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6269rna6269-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24419.1cds6254Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6269 ID=rna6269|Name=rna6269|organism=Nannochloropsis gaditana|type=mRNA|length=834bp
ATGCTAATGACTCTCCGGAAAACAAATTGCGCCAAGGACCCGTCCTGTCG
GGCCACCGTCGAAAATCAGCTCACGAAGATGGGCTGTGAAGCTTTCACCT
ACTACCCAGCCATCCAAGCCATGGGTGCCGTGTGTTACGCCCCCGCCGTC
TCCCCCCTGGAAGCGAAGAAGTTGACCCTGCAGTCCCTCCTTGGCATCCG
GGCAGCCACCACCTACTTCTCTTCGGCCACGCTGGACATGAAAGTCCAAG
TCGATCCTGGGAGGGACAACGACCCGACCTGGATCAACGCCGGATGGCAA
CGGGGGTCGTGGTGGCGACAGAACCGAAATCGGAATCGGAACCGAAACCG
AAATCGAAACCGAAACCGAAACCGTCCCCCGCTCTTTGCCCGTCCTCCAC
CGGCACCTGCCCCAGTACCTCCCCCTCCCCCTCCCCCTCCCCCTCCCCCT
CCCGCTTCCCCTCCCGCGCCGTCTCCTGGCAACAACGTGCAGCCCAGCCC
CCCGAACCCCCCCCCGGCCCCCGAAACCGCCCCGAATCCCAATATCTATA
ATTGGGGGAACGACCGGTCCAACCAGATGAGGGGCTTGGACATGAACCGC
CAGCAGTGCAAGTCGCGAGGCACAGACGTGAACATTTTCGTGTTGGACAC
AGGCTGCCTGACCAGCCACGACGAAATCCGCGGGCGTGCCACGACCGAGA
GCACGGGCATGGTCACGGCACCCACTGCGCGGGCACGGCGGCTGGGACGA
ATGTGGGTATCGCCCCCGACGCGACGGTCCGCTGTCTTAAGGTGTTGGCG
GACACCGGGTCCGGTCAGCTGTTCCACGTCGTAG
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protein sequence of rna6269

>rna6269-protein ID=rna6269-protein|Name=rna6269|organism=Nannochloropsis gaditana|type=polypeptide|length=123bp
PPSRPQQYNPDQMVVVSLSLGATYSATVNRAVEALTAQGIPCVVAAGNSN
VDAANASPASSAGAITVAATGKTDLRECECEDGWEGGREGGKERRGGVWG
WRGYERVESSFSLSPPLPTSSFL
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mRNA from alignment at CM002468.1:137370..137839+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6269 ID=rna6269|Name=rna6269|organism=Nannochloropsis gaditana|type=mRNA|length=470bp|location=Sequence derived from alignment at CM002468.1:137370..137839+ (Nannochloropsis gaditana)
tccctccctcccgaccccaACAGTACAACCCGGACCAAATGGTGGTCGTA
TCCCTTTCCTTGGGCGCTACCTACTCGGCGACCGTGAAcagggccgtgga
ggccctcACTGCCCAGGGGATCCCCTGCGTAGTGGCAGCCGGGAACTCGA
ACGTCGACGCCGCCAACGCCAgtcccgcttcctccgcagGCGCCATCACC
GTGGCGGCCACGGGCAAAACGGACCTACGGGAATGTGAGTGCGAggatgg
gtgggagggagggagggaaggagggaaggagaggcgggggggcgtttggg
ggtggaggggataCGAACGGGTCGAATCATCCTTTTCTTTATCACCTCCG
CTCCCtacttcttccttcctttgaATGTGCCAATGGCTTCatttctcgtc
ttccttttcctcataCCGACCACCTCGTCTATACCTCCActcatccttcc
ccctcgccttccccccgccc
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Coding sequence (CDS) from alignment at CM002468.1:137370..137839+

>rna6269 ID=rna6269|Name=rna6269|organism=Nannochloropsis gaditana|type=CDS|length=372bp|location=Sequence derived from alignment at CM002468.1:137370..137839+ (Nannochloropsis gaditana)
cctccctcccgaccccaACAGTACAACCCGGACCAAATGGTGGTCGTATC
CCTTTCCTTGGGCGCTACCTACTCGGCGACCGTGAAcagggccgtggagg
ccctcACTGCCCAGGGGATCCCCTGCGTAGTGGCAGCCGGGAACTCGAAC
GTCGACGCCGCCAACGCCAgtcccgcttcctccgcagGCGCCATCACCGT
GGCGGCCACGGGCAAAACGGACCTACGGGAATGTGAGTGCGAggatgggt
gggagggagggagggaaggagggaaggagaggcgggggggcgtttggggg
tggaggggataCGAACGGGTCGAATCATCCTTTTCTTTATCACCTCCGCT
CCCtacttcttccttcctttga
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Synonyms
Publications