rna6268, rna6268 (mRNA) Nannochloropsis gaditana

Overview
Namerna6268
Unique Namerna6268
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1031
Alignment locationCM002468.1:135752..137164 +

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Properties
Property NameValue
ProductPeptidase S8
Orig transcript idgnl|cribi|Naga_100397g1.9993.mrna
Orig protein idgnl|cribi|Naga_100397g1.9993
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:135752..137164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100397g1gene6061Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6268rna6268-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24420.1cds6253Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6268 ID=rna6268|Name=rna6268|organism=Nannochloropsis gaditana|type=mRNA|length=1031bp
CAGTGGCGCCGAAAAGGCAAGATGGTGCGTCATGGCCGAAGCAGAAGCTC
GCAAACCGTACAGAGACCGAGAAAAAGGAAAAGTAAACGTCCTTGTCCTT
CAGGTATTGGGTGTCGATTTCAGCATGAGATGCAGGTAGGCCCCCTTTCA
CCGATAACTTATATGCGAGAGTTTACCTGATGTTCTTCCTGTCAGCGTAT
ATACCACGTGTGTTTTACAAAAGAGCTCTTTTGTCTCAAGACCTTTAAAT
ATTTTCTGTGCAATGCACTTTACATGCCATTCGTGCTGCTTATTTATATC
GATAACCACCTACTTTACCCTGCCTCCGACTCGTTTCCGTATCGTAAGCA
TACCATGGAATTTTCACACGAACCCGAGGTGGTATCCCCAAAAAATCGAA
GGATTACCGAAAGCGGTCGAGGAAAATGGCCCGGTCGGGGGCGTAGGCTG
GGGGAATGCCGGCCTCGGACAGGACGAGCCAAGAAGGAGGAATGTAAAAA
CCTACCACCGAGGGAGGAGGATCAAGGAGAAGAAAGAAGAAATTCAGGAA
AAGAAGCTGGAAAAGCGGGGGCTGAGAAGGAAGGAGGATTCGGTGAAAAG
ATAGGTCGAAATGTGAAGGGGCAACGAGAGAAGGACACGGGAAGGAAAGC
CGCGATTCAGGGGGAAAGGGAGCATGGAGGGTGCAGGGGGAAGAGAAAAA
GCCTGGAGGTGATACTGGTGGACAGTGATTAGGAGGAAGGTATCGGCGGA
GGCCGGGAGAATGGACAGGGCTGAATGGAAAGAATGGGAAGGGCGAGAAG
AAAGCAGGGCAGGGATTTGAATATGGGCCCCGCTTGACCATGCGACGGCC
TGGAGGAAGGGCCGGGGGAATCGGAGGGGGAGGGAAGGAAGCAAAGTACT
TGACCAAGAGAAGTTGTGTAGGACATGGATCGAAAGTGTTACCAGTCTTG
TTCTGTAATTGGAAGCACACAAATGTTCGATAAACGAGCTTGAAAGCGCT
GTGTCCTGGAAAAGAAATAATTCCCGGGAGG
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protein sequence of rna6268

>rna6268-protein ID=rna6268-protein|Name=rna6268|organism=Nannochloropsis gaditana|type=polypeptide|length=277bp
MLMTLRKTNCAKDPSCRATVENQLTKMGCEAFTYYPAIQAMGAVCYAPAV
SPLEAKKLTLQSLLGIRAATTYFSSATLDMKVQVDPGRDNDPTWINAGWQ
RGSWWRQNRNRNRNRNRNRNRNRNRPPLFARPPPAPAPVPPPPPPPPPPP
PASPPAPSPGNNVQPSPPNPPPAPETAPNPNIYNWGNDRSNQMRGLDMNR
QQCKSRGTDVNIFVLDTGCLTSHDEIRGRATTESTGMVTAPTARARRLGR
MWVSPPTRRSAVLRCWRTPGPVSCSTS
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mRNA from alignment at CM002468.1:135752..137164+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6268 ID=rna6268|Name=rna6268|organism=Nannochloropsis gaditana|type=mRNA|length=1413bp|location=Sequence derived from alignment at CM002468.1:135752..137164+ (Nannochloropsis gaditana)
ATGCTAATGACTCTCCGGAAAACAAATTGCGCCAAGTAAGGAGATACGGA CTGCAATCGAAGAGAGGGAtctggggggaagggatagTGTCATCTTCACG CTATCATTTTTTTAGTTGTGAATAAGGCAGAGACTTTAAGGCAGGCATGT CTACTATGGCTTCCATTACCTCTgactccctcgcctcgccgccctttttc cccctcgaccccccatgcttctttcctccccctctttctttccctcttag GGACCCGTCCTGTCGGGCCACCGTCGAAAATCAGCTCACGAAGATGGGCT GTGAAGCTTTCACCTACTACCCAGCCATCCAAGCCATGGGTGCCGTGTGT TacgcccccgccgtctcccccctgGAAGCGAAGAAGTTGACCCTGCAGTC CCTCCTTGGCATCCGGGCAGCCACCACCTACTTCTCTTCGGCCACGCTGG ACATGAAAGTCCAAGTCGATCCTGGGAGGGACAACGACCCGACCTGGATC AACGCCGGATGGCAACGGGGGTCGTGGTGGCGACAGAACCGAAATCGGAA TCGGAACCGAAACCGAAATCGAAACCGAAACCGAAACCGTCCCCCGCTct ttgcccgtcctccaccggcacctGCCCCagtacctccccctccccctccc cctccccctccccctcccgcttcccctcccgcgccgtCTCCTGGCAACAA CGTGCAGCCCAGCCCCCCgaacccccccccggcccccgaAACCGCCCCGA ATCCCAATATCTATAATTGGGGGAACGACCGGTCCAACCAGATGAGGGGC TTGGACATGAACCGCCAGCAGTGCAAGTCGCGAGGCACAGACGTGAACAT TTTCGTGTTGGACACAGGTAcggcggtgggaaagggatgggagagagggg cggaaTGGAGTAGGGAGGCATTCTTTCTGAGACGTAGGAAGAGGGCGACC GACCgcaaggcaggcagggagggagggaggggagggagggtaggagtGTC GGATggtggaagaaagggagggagtggaagcCACCAAGGGTATGCACATG CTGTGGCTCTCGAGTATGCGTCTTGCGAAGAGGAGTTGtcacgtccctcc cccctgcctttccccttcttcgagGAGCTGACcacccctgcttccctccc tccctccctccctccctccctccctccctcccccccaggcTGCCTGACCA GCCACGACGAAATCCGCGGGCGTGCCACGACCGAGAGCGTGACGCTGGAC AATGGCTTTAGACCCTACGGGACTGGGAGAGACGGGCATGGTCACGGCAC CCACTGCGCGGGCACGGCGGCTGGGACGAATGTGGGTATCGCCCCCGACG CGACGGTCCGCTGTCTTAAGGTGTTGGCGGACACCGGGTCCGGTCAGCTG TTCCACGTCGTAG
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Coding sequence (CDS) from alignment at CM002468.1:135752..137164+

>rna6268 ID=rna6268|Name=rna6268|organism=Nannochloropsis gaditana|type=CDS|length=3336bp|location=Sequence derived from alignment at CM002468.1:135752..137164+ (Nannochloropsis gaditana)
ATGCTAATGACTCTCCGGAAAACAAATTGCGCCAAGGACCCGTCCTGTCG
GGCCACCGTCGAAAATCAGCTCACGAAGATGGGCTGTGAAGCTTTCACCT
ACTACCCAGCCATCCAAGCCATGGGTGCCGTGTGTTacgcccccgccgtc
tcccccctgGAAGCGAAGAAGTTGACCCTGCAGTCCCTCCTTGGCATCCG
GGCAGCCACCACCTACTTCTCTTCGGCCACGCTGGACATGAAAGTCCAAG
TCGATCCTGGGAGGGACAACGACCCGACCTGGATCAACGCCGGATGGCAA
CGGGGGTCGTGGTGGCGACAGAACCGAAATCGGAATCGGAACCGAAACCG
AAATCGAAACCGAAACCGAAACCGTCCCCCGCTctttgcccgtcctccac
cggcacctGCCCCagtacctccccctccccctccccctccccctccccct
cccgcttcccctcccgcgccgtCTCCTGGCAACAACGTGCAGCCCAGCCC
CCCgaacccccccccggcccccgaAACCGCCCCGAATCCCAATATCTATA
ATTGGGGGAACGACCGGTCCAACCAGATGAGGGGCTTGGACATGAACCGC
CAGCAGTGCAAGTCGCGAGGCACAGACGTGAACATTTTCGTGTTGGACAC
AGgcTGCCTGACCAGCCACGACGAAATCCGCGGGCGTGCCACGACCGAGA
GCACGGGCATGGTCACGGCACCCACTGCGCGGGCACGGCGGCTGGGACGA
ATGTGGGTATCGCCCCCGACGCGACGGTCCGCTGTCTTAAGGTGTTGGCG
GACACCGGGTCCGGTCAGCTGTTCCACGTCGTAGATGCTAATGACTCTCC
GGAAAACAAATTGCGCCAAGGACCCGTCCTGTCGGGCCACCGTCGAAAAT
CAGCTCACGAAGATGGGCTGTGAAGCTTTCACCTACTACCCAGCCATCCA
AGCCATGGGTGCCGTGTGTTacgcccccgccgtctcccccctgGAAGCGA
AGAAGTTGACCCTGCAGTCCCTCCTTGGCATCCGGGCAGCCACCACCTAC
TTCTCTTCGGCCACGCTGGACATGAAAGTCCAAGTCGATCCTGGGAGGGA
CAACGACCCGACCTGGATCAACGCCGGATGGCAACGGGGGTCGTGGTGGC
GACAGAACCGAAATCGGAATCGGAACCGAAACCGAAATCGAAACCGAAAC
CGAAACCGTCCCCCGCTctttgcccgtcctccaccggcacctGCCCCagt
acctccccctccccctccccctccccctccccctcccgcttcccctcccg
cgccgtCTCCTGGCAACAACGTGCAGCCCAGCCCCCCgaacccccccccg
gcccccgaAACCGCCCCGAATCCCAATATCTATAATTGGGGGAACGACCG
GTCCAACCAGATGAGGGGCTTGGACATGAACCGCCAGCAGTGCAAGTCGC
GAGGCACAGACGTGAACATTTTCGTGTTGGACACAGgcTGCCTGACCAGC
CACGACGAAATCCGCGGGCGTGCCACGACCGAGAGCACGGGCATGGTCAC
GGCACCCACTGCGCGGGCACGGCGGCTGGGACGAATGTGGGTATCGCCCC
CGACGCGACGGTCCGCTGTCTTAAGGTGTTGGCGGACACCGGGTCCGGTC
AGCTGTTCCACGTCGTAGATGCTAATGACTCTCCGGAAAACAAATTGCGC
CAAGGACCCGTCCTGTCGGGCCACCGTCGAAAATCAGCTCACGAAGATGG
GCTGTGAAGCTTTCACCTACTACCCAGCCATCCAAGCCATGGGTGCCGTG
TGTTacgcccccgccgtctcccccctgGAAGCGAAGAAGTTGACCCTGCA
GTCCCTCCTTGGCATCCGGGCAGCCACCACCTACTTCTCTTCGGCCACGC
TGGACATGAAAGTCCAAGTCGATCCTGGGAGGGACAACGACCCGACCTGG
ATCAACGCCGGATGGCAACGGGGGTCGTGGTGGCGACAGAACCGAAATCG
GAATCGGAACCGAAACCGAAATCGAAACCGAAACCGAAACCGTCCCCCGC
TctttgcccgtcctccaccggcacctGCCCCagtacctccccctccccct
ccccctccccctccccctcccgcttcccctcccgcgccgtCTCCTGGCAA
CAACGTGCAGCCCAGCCCCCCgaacccccccccggcccccgaAACCGCCC
CGAATCCCAATATCTATAATTGGGGGAACGACCGGTCCAACCAGATGAGG
GGCTTGGACATGAACCGCCAGCAGTGCAAGTCGCGAGGCACAGACGTGAA
CATTTTCGTGTTGGACACAGgcTGCCTGACCAGCCACGACGAAATCCGCG
GGCGTGCCACGACCGAGAGCACGGGCATGGTCACGGCACCCACTGCGCGG
GCACGGCGGCTGGGACGAATGTGGGTATCGCCCCCGACGCGACGGTCCGC
TGTCTTAAGGTGTTGGCGGACACCGGGTCCGGTCAGCTGTTCCACGTCGT
AGATGCTAATGACTCTCCGGAAAACAAATTGCGCCAAGGACCCGTCCTGT
CGGGCCACCGTCGAAAATCAGCTCACGAAGATGGGCTGTGAAGCTTTCAC
CTACTACCCAGCCATCCAAGCCATGGGTGCCGTGTGTTacgcccccgccg
tctcccccctgGAAGCGAAGAAGTTGACCCTGCAGTCCCTCCTTGGCATC
CGGGCAGCCACCACCTACTTCTCTTCGGCCACGCTGGACATGAAAGTCCA
AGTCGATCCTGGGAGGGACAACGACCCGACCTGGATCAACGCCGGATGGC
AACGGGGGTCGTGGTGGCGACAGAACCGAAATCGGAATCGGAACCGAAAC
CGAAATCGAAACCGAAACCGAAACCGTCCCCCGCTctttgcccgtcctcc
accggcacctGCCCCagtacctccccctccccctccccctccccctcccc
ctcccgcttcccctcccgcgccgtCTCCTGGCAACAACGTGCAGCCCAGC
CCCCCgaacccccccccggcccccgaAACCGCCCCGAATCCCAATATCTA
TAATTGGGGGAACGACCGGTCCAACCAGATGAGGGGCTTGGACATGAACC
GCCAGCAGTGCAAGTCGCGAGGCACAGACGTGAACATTTTCGTGTTGGAC
ACAGgcTGCCTGACCAGCCACGACGAAATCCGCGGGCGTGCCACGACCGA
GAGCACGGGCATGGTCACGGCACCCACTGCGCGGGCACGGCGGCTGGGAC
GAATGTGGGTATCGCCCCCGACGCGACGGTCCGCTGTCTTAAGGTGTTGG
CGGACACCGGGTCCGGTCAGCTGTTCCACGTCGTAG
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Synonyms
Publications