rna6262, rna6262 (mRNA) Nannochloropsis gaditana

Overview
Namerna6262
Unique Namerna6262
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length591
Alignment locationCM002468.1:118570..119742 -

Link to JBrowse

Properties
Property NameValue
Productputative e3 ubiquitin-protein ligase makorin-2
Orig transcript idgnl|cribi|Naga_101218g1.8586.mrna
Orig protein idgnl|cribi|Naga_101218g1.8586
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:118570..119742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101218g1gene6055Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6262rna6262-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24427.1cds6247Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6262 ID=rna6262|Name=rna6262|organism=Nannochloropsis gaditana|type=mRNA|length=591bp
CATGGTACAATGATCTGATCCACAACCTCCTTCCTTTTCCCTTTCTGTTA
AATGGAACACGCAGAGTTCGATTTGTTACAGAGCACTTGTACTTCACGCA
CCGCAAGTAAACGTCGCCATGTCTTGCCGCATTTACGTCGGTAATTTGCC
AATGGACGTCCGTGAGCGCGACTTGGACGACCTGTTCTACAAGTACGGGC
GAATTCGGGGCATCGACATCAAGCGTCCAAGTCGACCACCCGCCTATGCA
TTTGTCGCCTTTGAAGACCCTCGGGATGCCAAGGACGCTGTGCACTACCG
GGACAATTACGATTTCGACGGAGGGCGCATCCGGGTGGAGTTGGCGAACG
AGACCCCCCGCCGGCGCGACGACCGAGGCTTTGGCGGTGGAAGGAATCGC
ACAGACTTTCGGCTCGAGGTCTCTGATCTTCCTGACAGGACCTCTTGGCA
AGATTTGAAGGTGGCCTACCTACCTACCCACCTACCTACCTCCCTCCTTC
CCTCCCTCCCTCTCTTCCTCTTTCCTTTCCTCCCTTCCTTTAATGTAGAC
CTCCCCCTCTCCTTTCCTTCACCCTTCCCTTCTCTTGCCGT
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protein sequence of rna6262

>rna6262-protein ID=rna6262-protein|Name=rna6262|organism=Nannochloropsis gaditana|type=polypeptide|length=119bp
PPTVKTRRTCVRVPCANRSLTLSSPHTHHVTDPHRKKNLVRAYKAQMNKK
PCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEG
RVEVVQEVKLSDFLTQGRG
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mRNA from alignment at CM002468.1:118570..119742-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6262 ID=rna6262|Name=rna6262|organism=Nannochloropsis gaditana|type=mRNA|length=1173bp|location=Sequence derived from alignment at CM002468.1:118570..119742- (Nannochloropsis gaditana)
CCTCCCACAGTCAAAACACGGCGAACGTGCGTTCGTGTCCCATGTGCAAA
CAGATCTCTCACTTTGTCATCCCCCCACACTCACCACGTCACTGACCCGC
ACCGCAAGGTTGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGCAGGAAGGAGGAAAGTAGGAAACCAGCGCC
TGATTTAGTTCGGCATCCGACGCCTTCTTTCTCATTCTTCTTGCTCGTTT
TCCTTTTCTTTCCGGCTCAGAAAAACCTCGTCCGGGCATACAAAGCACAA
ATGAGTAAGGAGAAACCATGGGAAGGAGGGAGGAAGGGTGGAAAGGAGTA
GAAAAAGATCCGTCCCTCTCAACCACCAAAATCGGAGAAACAGTCTCATT
GAGAATTCGTGACGCCACTCCCTCTCTCCCACCCTCCCTATCTCCTTCCT
TCCCTCAGACAAGAAACCCTGTAGATACTTCACCTACCAAGAGGGGGACG
AGGAAGCCTCCTTCCAGTCGTGTCCATTCGGAACCTCCTGCTTTTACGCG
CATTTAAAGCACGATGGCACCCCTCTGACCCCACCGCGCCTGAGAACGAG
GATGGGGGAGGAAGGGAGGGTGGAGGTAGTCCAAGAGGTAAAACTCTCGG
ATTTTCTGACGCAGGGCCGGGGATAAAACGGCAGTTTCCGGTCGGTCCAG
CGAGGAGGGGGGGCACCCCTTTGGGTTGGCCTGGGCGGTGCATGCGTGGC
GACAAGACAGGACGCACGAAGGGCTCGATAGGATTAGCGATAGGATGGGA
TTGGAACGGAAGGAGAAGCAAAGGGAGTGTAGACACCTCCCGGAAGGTTC
CATGGATTTAGAGCAGGGGAAGGGGAGTTGCCGATCCTCCCAAGCTCATG
GTTAGCTAGTGCCAGCGGAGGTGAAGCGGGCTATCTATCCGTGGCGAGCA
CAAAGGCGTGCAGCATGCACTGGAATAGGATAGTGAACAATGTGCACTTT
CCGATGATGAAACCATGCGTGAAGCATGGGAAGTATGATGCATTTGACAC
TTTGAGCGCTAATCCACATTGAAACGCAAAAGGATGGCGCCCGATAAAAT
GGTCTAAAAGATGACGTGGTACGCCAGAAAAAAATGTACCAATTCATGAA
GAAGAAAAAAAAGTGTCATGGAA
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Coding sequence (CDS) from alignment at CM002468.1:118570..119742-

>rna6262 ID=rna6262|Name=rna6262|organism=Nannochloropsis gaditana|type=CDS|length=1080bp|location=Sequence derived from alignment at CM002468.1:118570..119742- (Nannochloropsis gaditana)
ACAAGAAACCCTGTAGATACTTCACCTACCAAGAGGGGGACGAGGAAGCC
TCCTTCCAGTCGTGTCCATTCGGAACCTCCTGCTTTTACGCGCATTTAAA
GCACGATGGCACCCCTCTGACCCCACCGCGCCTGAGAACGAGGATGGGGG
AGGAAGGGAGGGTGGAGGTAGTCCAAGAGGTAAAACTCTCGGATTTTCTG
ACGCAGGGCCGGGGATAAAAAAACCTCGTCCGGGCATACAAAGCACAAAT
GACCTCCCACAGTCAAAACACGGCGAACGTGCGTTCGTGTCCCATGTGCA
AACAGATCTCTCACTTTGTCATCCCCCCACACTCACCACGTCACTGACCC
GCACCGCAAGACAAGAAACCCTGTAGATACTTCACCTACCAAGAGGGGGA
CGAGGAAGCCTCCTTCCAGTCGTGTCCATTCGGAACCTCCTGCTTTTACG
CGCATTTAAAGCACGATGGCACCCCTCTGACCCCACCGCGCCTGAGAACG
AGGATGGGGGAGGAAGGGAGGGTGGAGGTAGTCCAAGAGGTAAAACTCTC
GGATTTTCTGACGCAGGGCCGGGGATAAAAAAACCTCGTCCGGGCATACA
AAGCACAAATGACCTCCCACAGTCAAAACACGGCGAACGTGCGTTCGTGT
CCCATGTGCAAACAGATCTCTCACTTTGTCATCCCCCCACACTCACCACG
TCACTGACCCGCACCGCAAGACAAGAAACCCTGTAGATACTTCACCTACC
AAGAGGGGGACGAGGAAGCCTCCTTCCAGTCGTGTCCATTCGGAACCTCC
TGCTTTTACGCGCATTTAAAGCACGATGGCACCCCTCTGACCCCACCGCG
CCTGAGAACGAGGATGGGGGAGGAAGGGAGGGTGGAGGTAGTCCAAGAGG
TAAAACTCTCGGATTTTCTGACGCAGGGCCGGGGATAAAAAAACCTCGTC
CGGGCATACAAAGCACAAATGACCTCCCACAGTCAAAACACGGCGAACGT
GCGTTCGTGTCCCATGTGCAAACAGATCTCTCACTTTGTCATCCCCCCAC
ACTCACCACGTCACTGACCCGCACCGCAAG
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Synonyms
Publications