EWM24427.1, cds6247 (CDS) Nannochloropsis gaditana

Overview
NameEWM24427.1
Unique Namecds6247
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:119635..119742 -
Alignment locationCM002468.1:119439..119472 -
Alignment locationCM002468.1:119067..119284 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24427.1
Productputative e3 ubiquitin-protein ligase makorin-2
Partialtrue
Orig transcript idgnl|cribi|Naga_101218g1.8586.mrna
GbkeyCDS
End range.
End range119742
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:119635..119742 -
CM002468.1supercontigCM002468.1:119439..119472 -
CM002468.1supercontigCM002468.1:119067..119284 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Homology
BLAST of EWM24427.1 vs. NCBI_GenBank
Match: gi|585105861|gb|EWM24427.1| (putative e3 ubiquitin-protein ligase makorin-2, partial [Nannochloropsis gaditana])

HSP 1 Score: 248.825 bits (634), Expect = 1.097e-83
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
Query:    1 PPTVKTRRTCVRVPCANRSLTLSSPHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFLTQGRG 119
            PPTVKTRRTCVRVPCANRSLTLSSPHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFLTQGRG
Sbjct:    1 PPTVKTRRTCVRVPCANRSLTLSSPHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFLTQGRG 119          
BLAST of EWM24427.1 vs. NCBI_GenBank
Match: gi|1129206592|gb|OLQ08681.1| (putative E3 ubiquitin-protein ligase makorin-2 [Symbiodinium microadriaticum])

HSP 1 Score: 82.8037 bits (203), Expect = 7.869e-17
Identity = 44/100 (44.00%), Postives = 56/100 (56.00%), Query Frame = 0
Query:   15 CANRSLTLSSPHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFL 114
            C N S  +  P  H + DP  K+ ++ +YK +M + PC+ F Y  G        CPFGTSCFYAHL  DGT   PP L+   G EG  +V  EVK+SDF 
Sbjct:  171 CRNESFYVI-PTDHIILDPEEKREVIDSYKQEMGRIPCKLFDYGRG-------HCPFGTSCFYAHLNPDGTRYIPPPLKWMRGAEGS-QVKSEVKISDFF 261          
BLAST of EWM24427.1 vs. NCBI_GenBank
Match: gi|926775660|ref|XP_013896304.1| (hypothetical protein MNEG_10676 [Monoraphidium neglectum] >gi|761965205|gb|KIY97284.1| hypothetical protein MNEG_10676 [Monoraphidium neglectum])

HSP 1 Score: 77.0258 bits (188), Expect = 1.327e-15
Identity = 45/111 (40.54%), Postives = 55/111 (49.55%), Query Frame = 0
Query:    4 VKTRRTCVRVPCANRSLTLSSPHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFL 114
            +   RTC   P    +    +P T     P  K+ +V AYK +M    C +F Y EG       +CPFGTSCFY H   DGT   PP LR    EEG V V++ V LS FL
Sbjct:   14 LSALRTC---PVCRTTTHFITPSTSWPETPDEKEAIVSAYKGKMAAIDCMHFDYGEG-------ACPFGTSCFYRHAYRDGTLAPPPDLRRAADEEGMVRVLRPVTLSSFL 114          
BLAST of EWM24427.1 vs. NCBI_GenBank
Match: gi|857972416|emb|CEP01453.1| (hypothetical protein PBRA_002059 [Plasmodiophora brassicae])

HSP 1 Score: 73.9442 bits (180), Expect = 4.122e-13
Identity = 34/91 (37.36%), Postives = 52/91 (57.14%), Query Frame = 0
Query:   25 PHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFLT 115
            P    VTDP RK  ++  Y +++ +  C++F   +G       +CPFG+SCFYAH   DGT   P RL+     +G +EV++ ++LSDF  
Sbjct:  294 PSDRMVTDPARKAAVIEKYTSRLRQIECKWFARGKG-------TCPFGSSCFYAHTNEDGTLAQPERLQHGANADGVIEVMKPMRLSDFFA 377          
BLAST of EWM24427.1 vs. NCBI_GenBank
Match: gi|597734794|ref|XP_007229689.1| (PREDICTED: probable E3 ubiquitin-protein ligase makorin-2 [Astyanax mexicanus])

HSP 1 Score: 73.559 bits (179), Expect = 6.387e-13
Identity = 34/92 (36.96%), Postives = 50/92 (54.35%), Query Frame = 0
Query:   25 PHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFLTQ 116
            P  + V D   K  L+  +K+ ++KKPC+YF +  G       +CPFG  CFY H   DGT   P + R ++G EG V  +  V+L DF+ +
Sbjct:  293 PSIYWVEDQEEKNRLIEEFKSGVSKKPCKYFDHGRG-------TCPFGGKCFYMHANPDGTRAEPDKPRKQLGSEGNVRFLNSVRLWDFIEE 377          
BLAST of EWM24427.1 vs. NCBI_GenBank
Match: gi|301115348|ref|XP_002905403.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262110192|gb|EEY68244.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 72.4034 bits (176), Expect = 1.398e-12
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 0
Query:   25 PHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFLTQ 116
            P +  VT P RKK L+  Y+  ++  PCR+F    G       +CPFGTSCFYAH   DGT L   ++RT +  +G+ +V+++V+L +FL Q
Sbjct:  319 PSSRMVTRPERKKVLIDVYRKNLSGIPCRHFDEGRG-------TCPFGTSCFYAHRYPDGT-LASRQVRTAVDSDGQYDVLRQVRLENFLRQ 402          
BLAST of EWM24427.1 vs. NCBI_GenBank
Match: gi|677097532|gb|KFP32645.1| (putative E3 ubiquitin-protein ligase makorin-2, partial [Colius striatus])

HSP 1 Score: 69.3218 bits (168), Expect = 3.189e-12
Identity = 33/90 (36.67%), Postives = 47/90 (52.22%), Query Frame = 0
Query:   25 PHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFL 114
            P  + V D  +K  L+ A+K  + KKPC+YF   +G       +CPFG  C Y H   DGT   P + R ++  EG V  +  V+L DF+
Sbjct:   85 PSAYWVEDQEKKNELIEAFKQGVGKKPCKYFEQGKG-------TCPFGGKCLYLHAYPDGTRAEPEKPRKQLSSEGTVRFLSSVRLWDFI 167          
BLAST of EWM24427.1 vs. NCBI_GenBank
Match: gi|706138836|ref|XP_010202518.1| (PREDICTED: probable E3 ubiquitin-protein ligase makorin-2 [Colius striatus])

HSP 1 Score: 69.707 bits (169), Expect = 3.491e-12
Identity = 33/90 (36.67%), Postives = 47/90 (52.22%), Query Frame = 0
Query:   25 PHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFL 114
            P  + V D  +K  L+ A+K  + KKPC+YF   +G       +CPFG  C Y H   DGT   P + R ++  EG V  +  V+L DF+
Sbjct:   84 PSAYWVEDQEKKNELIEAFKQGVGKKPCKYFEQGKG-------TCPFGGKCLYLHAYPDGTRAEPEKPRKQLSSEGTVRFLSSVRLWDFI 166          
BLAST of EWM24427.1 vs. NCBI_GenBank
Match: gi|929293408|ref|XP_014023951.1| (PREDICTED: probable E3 ubiquitin-protein ligase makorin-2 isoform X1 [Salmo salar])

HSP 1 Score: 71.2478 bits (173), Expect = 4.480e-12
Identity = 34/92 (36.96%), Postives = 49/92 (53.26%), Query Frame = 0
Query:   25 PHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFLTQ 116
            P  + V D   K  L+  +K+ ++KKPC+YF    G       +CPFG  CFY H   DGT   P + R ++G EG V  +  V+L DF+ +
Sbjct:  315 PSVYWVEDQDEKNRLIEDFKSGVSKKPCKYFDQGRG-------TCPFGGKCFYMHAYPDGTRAEPDKPRKQLGSEGNVRFLNSVRLWDFIEE 399          
BLAST of EWM24427.1 vs. NCBI_GenBank
Match: gi|291190156|ref|NP_001167194.1| (probable E3 ubiquitin-protein ligase makorin-2 [Salmo salar] >gi|223648582|gb|ACN11049.1| Makorin-2 [Salmo salar])

HSP 1 Score: 71.2478 bits (173), Expect = 4.796e-12
Identity = 34/92 (36.96%), Postives = 49/92 (53.26%), Query Frame = 0
Query:   25 PHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFLTQ 116
            P  + V D   K  L+  +K+ ++KKPC+YF    G       +CPFG  CFY H   DGT   P + R ++G EG V  +  V+L DF+ +
Sbjct:  315 PSVYWVEDQDEKNRLIEDFKSGVSKKPCKYFDQGRG-------TCPFGGKCFYMHAYPDGTRAEPDKPRKQLGSEGNVRFLNSVRLWDFIEE 399          
The following BLAST results are available for this feature:
BLAST of EWM24427.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105861|gb|EWM24427.1|1.097e-83100.00putative e3 ubiquitin-protein ligase makorin-2, pa... [more]
gi|1129206592|gb|OLQ08681.1|7.869e-1744.00putative E3 ubiquitin-protein ligase makorin-2 [Sy... [more]
gi|926775660|ref|XP_013896304.1|1.327e-1540.54hypothetical protein MNEG_10676 [Monoraphidium neg... [more]
gi|857972416|emb|CEP01453.1|4.122e-1337.36hypothetical protein PBRA_002059 [Plasmodiophora b... [more]
gi|597734794|ref|XP_007229689.1|6.387e-1336.96PREDICTED: probable E3 ubiquitin-protein ligase ma... [more]
gi|301115348|ref|XP_002905403.1|1.398e-1241.30conserved hypothetical protein [Phytophthora infes... [more]
gi|677097532|gb|KFP32645.1|3.189e-1236.67putative E3 ubiquitin-protein ligase makorin-2, pa... [more]
gi|706138836|ref|XP_010202518.1|3.491e-1236.67PREDICTED: probable E3 ubiquitin-protein ligase ma... [more]
gi|929293408|ref|XP_014023951.1|4.480e-1236.96PREDICTED: probable E3 ubiquitin-protein ligase ma... [more]
gi|291190156|ref|NP_001167194.1|4.796e-1236.96probable E3 ubiquitin-protein ligase makorin-2 [Sa... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6262rna6262Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications