EWM24427.1, cds6247 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24427.1 vs. NCBI_GenBank
Match: gi|585105861|gb|EWM24427.1| (putative e3 ubiquitin-protein ligase makorin-2, partial [Nannochloropsis gaditana]) HSP 1 Score: 248.825 bits (634), Expect = 1.097e-83 Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 Query: 1 PPTVKTRRTCVRVPCANRSLTLSSPHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFLTQGRG 119 PPTVKTRRTCVRVPCANRSLTLSSPHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFLTQGRG Sbjct: 1 PPTVKTRRTCVRVPCANRSLTLSSPHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFLTQGRG 119
BLAST of EWM24427.1 vs. NCBI_GenBank
Match: gi|1129206592|gb|OLQ08681.1| (putative E3 ubiquitin-protein ligase makorin-2 [Symbiodinium microadriaticum]) HSP 1 Score: 82.8037 bits (203), Expect = 7.869e-17 Identity = 44/100 (44.00%), Postives = 56/100 (56.00%), Query Frame = 0 Query: 15 CANRSLTLSSPHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFL 114 C N S + P H + DP K+ ++ +YK +M + PC+ F Y G CPFGTSCFYAHL DGT PP L+ G EG +V EVK+SDF Sbjct: 171 CRNESFYVI-PTDHIILDPEEKREVIDSYKQEMGRIPCKLFDYGRG-------HCPFGTSCFYAHLNPDGTRYIPPPLKWMRGAEGS-QVKSEVKISDFF 261
BLAST of EWM24427.1 vs. NCBI_GenBank
Match: gi|926775660|ref|XP_013896304.1| (hypothetical protein MNEG_10676 [Monoraphidium neglectum] >gi|761965205|gb|KIY97284.1| hypothetical protein MNEG_10676 [Monoraphidium neglectum]) HSP 1 Score: 77.0258 bits (188), Expect = 1.327e-15 Identity = 45/111 (40.54%), Postives = 55/111 (49.55%), Query Frame = 0 Query: 4 VKTRRTCVRVPCANRSLTLSSPHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFL 114 + RTC P + +P T P K+ +V AYK +M C +F Y EG +CPFGTSCFY H DGT PP LR EEG V V++ V LS FL Sbjct: 14 LSALRTC---PVCRTTTHFITPSTSWPETPDEKEAIVSAYKGKMAAIDCMHFDYGEG-------ACPFGTSCFYRHAYRDGTLAPPPDLRRAADEEGMVRVLRPVTLSSFL 114
BLAST of EWM24427.1 vs. NCBI_GenBank
Match: gi|857972416|emb|CEP01453.1| (hypothetical protein PBRA_002059 [Plasmodiophora brassicae]) HSP 1 Score: 73.9442 bits (180), Expect = 4.122e-13 Identity = 34/91 (37.36%), Postives = 52/91 (57.14%), Query Frame = 0 Query: 25 PHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFLT 115 P VTDP RK ++ Y +++ + C++F +G +CPFG+SCFYAH DGT P RL+ +G +EV++ ++LSDF Sbjct: 294 PSDRMVTDPARKAAVIEKYTSRLRQIECKWFARGKG-------TCPFGSSCFYAHTNEDGTLAQPERLQHGANADGVIEVMKPMRLSDFFA 377
BLAST of EWM24427.1 vs. NCBI_GenBank
Match: gi|597734794|ref|XP_007229689.1| (PREDICTED: probable E3 ubiquitin-protein ligase makorin-2 [Astyanax mexicanus]) HSP 1 Score: 73.559 bits (179), Expect = 6.387e-13 Identity = 34/92 (36.96%), Postives = 50/92 (54.35%), Query Frame = 0 Query: 25 PHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFLTQ 116 P + V D K L+ +K+ ++KKPC+YF + G +CPFG CFY H DGT P + R ++G EG V + V+L DF+ + Sbjct: 293 PSIYWVEDQEEKNRLIEEFKSGVSKKPCKYFDHGRG-------TCPFGGKCFYMHANPDGTRAEPDKPRKQLGSEGNVRFLNSVRLWDFIEE 377
BLAST of EWM24427.1 vs. NCBI_GenBank
Match: gi|301115348|ref|XP_002905403.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262110192|gb|EEY68244.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 72.4034 bits (176), Expect = 1.398e-12 Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 0 Query: 25 PHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFLTQ 116 P + VT P RKK L+ Y+ ++ PCR+F G +CPFGTSCFYAH DGT L ++RT + +G+ +V+++V+L +FL Q Sbjct: 319 PSSRMVTRPERKKVLIDVYRKNLSGIPCRHFDEGRG-------TCPFGTSCFYAHRYPDGT-LASRQVRTAVDSDGQYDVLRQVRLENFLRQ 402
BLAST of EWM24427.1 vs. NCBI_GenBank
Match: gi|677097532|gb|KFP32645.1| (putative E3 ubiquitin-protein ligase makorin-2, partial [Colius striatus]) HSP 1 Score: 69.3218 bits (168), Expect = 3.189e-12 Identity = 33/90 (36.67%), Postives = 47/90 (52.22%), Query Frame = 0 Query: 25 PHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFL 114 P + V D +K L+ A+K + KKPC+YF +G +CPFG C Y H DGT P + R ++ EG V + V+L DF+ Sbjct: 85 PSAYWVEDQEKKNELIEAFKQGVGKKPCKYFEQGKG-------TCPFGGKCLYLHAYPDGTRAEPEKPRKQLSSEGTVRFLSSVRLWDFI 167
BLAST of EWM24427.1 vs. NCBI_GenBank
Match: gi|706138836|ref|XP_010202518.1| (PREDICTED: probable E3 ubiquitin-protein ligase makorin-2 [Colius striatus]) HSP 1 Score: 69.707 bits (169), Expect = 3.491e-12 Identity = 33/90 (36.67%), Postives = 47/90 (52.22%), Query Frame = 0 Query: 25 PHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFL 114 P + V D +K L+ A+K + KKPC+YF +G +CPFG C Y H DGT P + R ++ EG V + V+L DF+ Sbjct: 84 PSAYWVEDQEKKNELIEAFKQGVGKKPCKYFEQGKG-------TCPFGGKCLYLHAYPDGTRAEPEKPRKQLSSEGTVRFLSSVRLWDFI 166
BLAST of EWM24427.1 vs. NCBI_GenBank
Match: gi|929293408|ref|XP_014023951.1| (PREDICTED: probable E3 ubiquitin-protein ligase makorin-2 isoform X1 [Salmo salar]) HSP 1 Score: 71.2478 bits (173), Expect = 4.480e-12 Identity = 34/92 (36.96%), Postives = 49/92 (53.26%), Query Frame = 0 Query: 25 PHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFLTQ 116 P + V D K L+ +K+ ++KKPC+YF G +CPFG CFY H DGT P + R ++G EG V + V+L DF+ + Sbjct: 315 PSVYWVEDQDEKNRLIEDFKSGVSKKPCKYFDQGRG-------TCPFGGKCFYMHAYPDGTRAEPDKPRKQLGSEGNVRFLNSVRLWDFIEE 399
BLAST of EWM24427.1 vs. NCBI_GenBank
Match: gi|291190156|ref|NP_001167194.1| (probable E3 ubiquitin-protein ligase makorin-2 [Salmo salar] >gi|223648582|gb|ACN11049.1| Makorin-2 [Salmo salar]) HSP 1 Score: 71.2478 bits (173), Expect = 4.796e-12 Identity = 34/92 (36.96%), Postives = 49/92 (53.26%), Query Frame = 0 Query: 25 PHTHHVTDPHRKKNLVRAYKAQMNKKPCRYFTYQEGDEEASFQSCPFGTSCFYAHLKHDGTPLTPPRLRTRMGEEGRVEVVQEVKLSDFLTQ 116 P + V D K L+ +K+ ++KKPC+YF G +CPFG CFY H DGT P + R ++G EG V + V+L DF+ + Sbjct: 315 PSVYWVEDQDEKNRLIEDFKSGVSKKPCKYFDQGRG-------TCPFGGKCFYMHAYPDGTRAEPDKPRKQLGSEGNVRFLNSVRLWDFIEE 399 The following BLAST results are available for this feature:
BLAST of EWM24427.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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