rna6261, rna6261 (mRNA) Nannochloropsis gaditana

Overview
Namerna6261
Unique Namerna6261
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length363
Alignment locationCM002468.1:116614..117770 -

Link to JBrowse

Properties
Property NameValue
Productasf sf2-like pre-mrna splicing factor srp31
Orig transcript idgnl|cribi|Naga_101218g3.8585.mrna
Orig protein idgnl|cribi|Naga_101218g3.8585
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:116614..117770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101218g3gene6054Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6261rna6261-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24426.1cds6246Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6261 ID=rna6261|Name=rna6261|organism=Nannochloropsis gaditana|type=mRNA|length=363bp
ATGGGGACGAGTGAGGTGCCGACGGAGGGGGGGGAGGGGAAGGAGGGAGC
AAGGAGGGAGAGAAGAGGGCAGTGTGCTGGAGGGGAGGAGACCCTGAACA
GGCGACGGGGCAAGGGAGGCAGCCAATCGAGATACCTCGGGTATTGCTGT
CATGTCTGTGCCACGAGGCGCGTGAGGTGGGTGGAGGGTAGAGGGTGGGG
CGAAGGAAAGGGTGTGCGGATAGGGCCCAAAAGTGCCGAGGAGGAGGGAG
AGTGGGAGGGGCAGTGGGGAGACTTGAAGTTGAGAAGGGGAGGGGAAGGG
CGAGCACATGGTCTAGTGGGTAGGACTTCGACCGCAAGTCACGACAGTGC
TTGCATGCTCTGA
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protein sequence of rna6261

>rna6261-protein ID=rna6261-protein|Name=rna6261|organism=Nannochloropsis gaditana|type=polypeptide|length=158bp
MSCRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFED
PRDAKDAVHYRDNYDFDGGRIRVELANETPRRRDDRGFGGGRNRTDFRLE
VSDLPDRTSWQDLKVAYLPTHLPTSLLPSLPLFLFPFLPSFNVDLPLSFP
SPFPSLAV
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mRNA from alignment at CM002468.1:116614..117770-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6261 ID=rna6261|Name=rna6261|organism=Nannochloropsis gaditana|type=mRNA|length=1157bp|location=Sequence derived from alignment at CM002468.1:116614..117770- (Nannochloropsis gaditana)
CATGGTACAATGATCTGATCCACAACCTCCTTCCTTTTCCCTTTCTGTTA
AATGGAACACGCAGAGTTCGATTTGTTACAGAGCACTTGTACTTCACGCA
CCGCAAGTAAACGTCGCCATGTCTTGCCGCATTTACGTCGGTAAGTAGGT
TCAGCCAAACGGGTTTTTCCTTCACTTGTTCCCCTCATCTTCCCTGGGTA
TTGACGCCTTTCTTCTTTGGCATTCTTCAAGGTAATTTGCCAATGGACGT
CCGTGAGCGCGACTTGGACGACCTGTTCTACAAGTACGGGCGAATTCGGG
GCATCGACATCAAGCGTCCAAGTCGGTACGAAAACGAGGACGGGATCACG
CGGAGTTTGGGCACGGAGAAGAAGGCAACTGGAACGGGAGGCAGGAGGAG
GAAAGGGCTAGCGATGCCCCCTAGAAGTATAAAAAATGGCTCTTGAAAAA
TATAGTTATGCCTTTGCGAAAATTCATGATGTTGGTTCGTGAGGTTGTAA
ATGCTGTAGACTTGTCAGTTAAGGCCGACGTGTCCTCAGGATCCCTGCCT
TCTTCCCTCCCTCCCTCCCTGCTTCCTTCAGACCACCCGCCTATGCATTT
GTCGCCTTTGAAGACCCTCGGGATGCCAAGGACGCTGTGCACTACCGGGA
CAATTACGATTTCGACGGAGGGCGCATCCGGGTGGAGTTGGCGAACGAGA
CCCCCCGCCGGCGCGACGACCGAGGTCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTATCTCTCTCTCTCTCTGTCTCTCTTTCTGTGGCATTCTCTCCT
CGCTCGGTCGGTTTAGGTCGATGCCGGGTGACTCTTCCTCCCCGTCTCTC
CATGCTCCCTGTGGGCTCCGCGCACCTTCCTTCCTGCTTGCCCCGCGCCT
CCACGGTTCTCACGACTTTGATGATTCTCTCGTTCCTCCTTAGGCTTTGG
CGGTGGAAGGAATCGCACAGACTTTCGGCTCGAGGTCTCTGATCTTCCTG
ACAGGACCTCTTGGCAAGATTTGAAGGTGGCCTACCTACCTACCCACCTA
CCTACCTCCCTCCTTCCCTCCCTCCCTCTCTTCCTCTTTCCTTTCCTCCC
TTCCTTTAATGTAGACCTCCCCCTCTCCTTTCCTTCACCCTTCCCTTCTC
TTGCCGT
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Coding sequence (CDS) from alignment at CM002468.1:116614..117770-

>rna6261 ID=rna6261|Name=rna6261|organism=Nannochloropsis gaditana|type=CDS|length=1892bp|location=Sequence derived from alignment at CM002468.1:116614..117770- (Nannochloropsis gaditana)
GCTTTGGCGGTGGAAGGAATCGCACAGACTTTCGGCTCGAGGTCTCTGAT
CTTCCTGACAGGACCTCTTGGCAAGATTTGAAGGTGGCCTACCTACCTAC
CCACCTACCTACCTCCCTCCTTCCCTCCCTCCCTCTCTTCCTCTTTCCTT
TCCTCCCTTCCTTTAATGTAGACCTCCCCCTCTCCTTTCCTTCACCCTTC
CCTTCTCTTGCCGTACCACCCGCCTATGCATTTGTCGCCTTTGAAGACCC
TCGGGATGCCAAGGACGCTGTGCACTACCGGGACAATTACGATTTCGACG
GAGGGCGCATCCGGGTGGAGTTGGCGAACGAGACCCCCCGCCGGCGCGAC
GACCGAGGTAATTTGCCAATGGACGTCCGTGAGCGCGACTTGGACGACCT
GTTCTACAAGTACGGGCGAATTCGGGGCATCGACATCAAGCGTCCAAGTC
GATGTCTTGCCGCATTTACGTCGGCTTTGGCGGTGGAAGGAATCGCACAG
ACTTTCGGCTCGAGGTCTCTGATCTTCCTGACAGGACCTCTTGGCAAGAT
TTGAAGGTGGCCTACCTACCTACCCACCTACCTACCTCCCTCCTTCCCTC
CCTCCCTCTCTTCCTCTTTCCTTTCCTCCCTTCCTTTAATGTAGACCTCC
CCCTCTCCTTTCCTTCACCCTTCCCTTCTCTTGCCGTACCACCCGCCTAT
GCATTTGTCGCCTTTGAAGACCCTCGGGATGCCAAGGACGCTGTGCACTA
CCGGGACAATTACGATTTCGACGGAGGGCGCATCCGGGTGGAGTTGGCGA
ACGAGACCCCCCGCCGGCGCGACGACCGAGGTAATTTGCCAATGGACGTC
CGTGAGCGCGACTTGGACGACCTGTTCTACAAGTACGGGCGAATTCGGGG
CATCGACATCAAGCGTCCAAGTCGATGTCTTGCCGCATTTACGTCGGCTT
TGGCGGTGGAAGGAATCGCACAGACTTTCGGCTCGAGGTCTCTGATCTTC
CTGACAGGACCTCTTGGCAAGATTTGAAGGTGGCCTACCTACCTACCCAC
CTACCTACCTCCCTCCTTCCCTCCCTCCCTCTCTTCCTCTTTCCTTTCCT
CCCTTCCTTTAATGTAGACCTCCCCCTCTCCTTTCCTTCACCCTTCCCTT
CTCTTGCCGTACCACCCGCCTATGCATTTGTCGCCTTTGAAGACCCTCGG
GATGCCAAGGACGCTGTGCACTACCGGGACAATTACGATTTCGACGGAGG
GCGCATCCGGGTGGAGTTGGCGAACGAGACCCCCCGCCGGCGCGACGACC
GAGGTAATTTGCCAATGGACGTCCGTGAGCGCGACTTGGACGACCTGTTC
TACAAGTACGGGCGAATTCGGGGCATCGACATCAAGCGTCCAAGTCGATG
TCTTGCCGCATTTACGTCGGCTTTGGCGGTGGAAGGAATCGCACAGACTT
TCGGCTCGAGGTCTCTGATCTTCCTGACAGGACCTCTTGGCAAGATTTGA
AGGTGGCCTACCTACCTACCCACCTACCTACCTCCCTCCTTCCCTCCCTC
CCTCTCTTCCTCTTTCCTTTCCTCCCTTCCTTTAATGTAGACCTCCCCCT
CTCCTTTCCTTCACCCTTCCCTTCTCTTGCCGTACCACCCGCCTATGCAT
TTGTCGCCTTTGAAGACCCTCGGGATGCCAAGGACGCTGTGCACTACCGG
GACAATTACGATTTCGACGGAGGGCGCATCCGGGTGGAGTTGGCGAACGA
GACCCCCCGCCGGCGCGACGACCGAGGTAATTTGCCAATGGACGTCCGTG
AGCGCGACTTGGACGACCTGTTCTACAAGTACGGGCGAATTCGGGGCATC
GACATCAAGCGTCCAAGTCGATGTCTTGCCGCATTTACGTCG
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Synonyms
Publications