EWM24426.1, cds6246 (CDS) Nannochloropsis gaditana

Overview
NameEWM24426.1
Unique Namecds6246
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:117631..117652 -
Alignment locationCM002468.1:117446..117539 -
Alignment locationCM002468.1:117047..117189 -
Alignment locationCM002468.1:116614..116827 -

Link to JBrowse

Properties
Property NameValue
Start range116614
Start range.
Protein idEWM24426.1
Productasf sf2-like pre-mrna splicing factor srp31
Partialtrue
Orig transcript idgnl|cribi|Naga_101218g3.8585.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:117631..117652 -
CM002468.1supercontigCM002468.1:117446..117539 -
CM002468.1supercontigCM002468.1:117047..117189 -
CM002468.1supercontigCM002468.1:116614..116827 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
BLAST of EWM24426.1 vs. NCBI_GenBank
Match: gi|585105860|gb|EWM24426.1| (asf sf2-like pre-mrna splicing factor srp31, partial [Nannochloropsis gaditana])

HSP 1 Score: 313.923 bits (803), Expect = 2.771e-108
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0
Query:    1 MSCRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNYDFDGGRIRVELANETPRRRDDRGFGGGRNRTDFRLEVSDLPDRTSWQDLKVAYLPTHLPTSLLPSLPLFLFPFLPSFNVDLPLSFPSPFPSLAV 158
            MSCRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNYDFDGGRIRVELANETPRRRDDRGFGGGRNRTDFRLEVSDLPDRTSWQDLKVAYLPTHLPTSLLPSLPLFLFPFLPSFNVDLPLSFPSPFPSLAV
Sbjct:    1 MSCRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNYDFDGGRIRVELANETPRRRDDRGFGGGRNRTDFRLEVSDLPDRTSWQDLKVAYLPTHLPTSLLPSLPLFLFPFLPSFNVDLPLSFPSPFPSLAV 158          
BLAST of EWM24426.1 vs. NCBI_GenBank
Match: gi|1002857564|ref|XP_015693317.1| (PREDICTED: serine/arginine-rich splicing factor SR30-like isoform X1 [Oryza brachyantha])

HSP 1 Score: 140.584 bits (353), Expect = 4.885e-38
Identity = 71/120 (59.17%), Postives = 84/120 (70.00%), Query Frame = 0
Query:    2 SCRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNYDFDGGRIRVELAN-------ETPRRRDDRGFGGGRNRTDFRLEVSDLPDRTSWQDLK 114
            SC IYVGNLP D+RER+++DLFYKYGRI  ID+K P RPP YAFV FEDPRDA+DA+H RD YDFDG R+RVELA+       +        G  G   RTD+R+ V+ LP   SWQDLK
Sbjct:    6 SCTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIHGRDAYDFDGHRLRVELAHGGRGPSFDRSSNNSSAGRRGASRRTDYRVMVTGLPSSASWQDLK 125          
BLAST of EWM24426.1 vs. NCBI_GenBank
Match: gi|1002857566|ref|XP_015693318.1| (PREDICTED: serine/arginine-rich-splicing factor SR34-like isoform X2 [Oryza brachyantha])

HSP 1 Score: 140.198 bits (352), Expect = 5.742e-38
Identity = 71/120 (59.17%), Postives = 84/120 (70.00%), Query Frame = 0
Query:    2 SCRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNYDFDGGRIRVELAN-------ETPRRRDDRGFGGGRNRTDFRLEVSDLPDRTSWQDLK 114
            SC IYVGNLP D+RER+++DLFYKYGRI  ID+K P RPP YAFV FEDPRDA+DA+H RD YDFDG R+RVELA+       +        G  G   RTD+R+ V+ LP   SWQDLK
Sbjct:    6 SCTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIHGRDAYDFDGHRLRVELAHGGRGPSFDRSSNNSSAGRRGASRRTDYRVMVTGLPSSASWQDLK 125          
BLAST of EWM24426.1 vs. NCBI_GenBank
Match: gi|1002857568|ref|XP_015693319.1| (PREDICTED: serine/arginine-rich splicing factor SR30-like isoform X3 [Oryza brachyantha])

HSP 1 Score: 140.198 bits (352), Expect = 5.779e-38
Identity = 71/120 (59.17%), Postives = 84/120 (70.00%), Query Frame = 0
Query:    2 SCRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNYDFDGGRIRVELAN-------ETPRRRDDRGFGGGRNRTDFRLEVSDLPDRTSWQDLK 114
            SC IYVGNLP D+RER+++DLFYKYGRI  ID+K P RPP YAFV FEDPRDA+DA+H RD YDFDG R+RVELA+       +        G  G   RTD+R+ V+ LP   SWQDLK
Sbjct:    6 SCTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIHGRDAYDFDGHRLRVELAHGGRGPSFDRSSNNSSAGRRGASRRTDYRVMVTGLPSSASWQDLK 125          
BLAST of EWM24426.1 vs. NCBI_GenBank
Match: gi|573943904|ref|XP_006654309.1| (PREDICTED: serine/arginine-rich-splicing factor SR34-like isoform X4 [Oryza brachyantha])

HSP 1 Score: 139.813 bits (351), Expect = 6.856e-38
Identity = 71/120 (59.17%), Postives = 84/120 (70.00%), Query Frame = 0
Query:    2 SCRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNYDFDGGRIRVELAN-------ETPRRRDDRGFGGGRNRTDFRLEVSDLPDRTSWQDLK 114
            SC IYVGNLP D+RER+++DLFYKYGRI  ID+K P RPP YAFV FEDPRDA+DA+H RD YDFDG R+RVELA+       +        G  G   RTD+R+ V+ LP   SWQDLK
Sbjct:    6 SCTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIHGRDAYDFDGHRLRVELAHGGRGPSFDRSSNNSSAGRRGASRRTDYRVMVTGLPSSASWQDLK 125          
BLAST of EWM24426.1 vs. NCBI_GenBank
Match: gi|695373418|ref|XP_009515045.1| (hypothetical protein PHYSODRAFT_246920 [Phytophthora sojae] >gi|348687956|gb|EGZ27770.1| hypothetical protein PHYSODRAFT_246920 [Phytophthora sojae])

HSP 1 Score: 142.51 bits (358), Expect = 2.380e-36
Identity = 70/117 (59.83%), Postives = 86/117 (73.50%), Query Frame = 0
Query:    2 SCRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNYDFDGGRIRVELANETPRRRDDRGFG----GGRNRTDFRLEVSDLPDRTSWQDLK 114
              R+YVGNLPMD+R R+++D+FYKYGRIR ID+K PSRPPA+AFV FEDPRDA+DA+  RD YD+DG R+RVE AN   R    RG G      R   D+ +E+S+LP R SWQDLK
Sbjct:  530 GTRVYVGNLPMDIRTREVEDIFYKYGRIRDIDVKFPSRPPAFAFVDFEDPRDAEDAIRGRDGYDYDGARLRVEPANGGRRESAPRGSGRYPRNIRGTGDYTVEISNLPPRVSWQDLK 646          
BLAST of EWM24426.1 vs. NCBI_GenBank
Match: gi|970635999|gb|KUF80747.1| (Pre-mRNA-splicing factor SF2 [Phytophthora nicotianae])

HSP 1 Score: 134.035 bits (336), Expect = 5.777e-36
Identity = 70/118 (59.32%), Postives = 85/118 (72.03%), Query Frame = 0
Query:    3 CRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNYDFDGGRIRVELANETPRRRDDRGFGGG------RNRTDFRLEVSDLPDRTSWQDLK 114
             R+YVGNLPMD+R R+++D+FYKYGRIR ID+K PSRPPA+AFV FED RDA+DA+  RD YD+DG R+RVE AN   RR   R  G        R   +F +EVS+LP R SWQDLK
Sbjct:    4 TRVYVGNLPMDIRTREVEDIFYKYGRIRDIDVKFPSRPPAFAFVDFEDARDAEDAIRGRDGYDYDGARLRVEPAN-GGRRESTRDRGSARYPRNIRGNGEFTVEVSNLPPRVSWQDLK 120          
BLAST of EWM24426.1 vs. NCBI_GenBank
Match: gi|669147322|ref|XP_008609223.1| (hypothetical protein SDRG_05288 [Saprolegnia diclina VS20] >gi|530738819|gb|EQC37061.1| hypothetical protein SDRG_05288 [Saprolegnia diclina VS20])

HSP 1 Score: 131.339 bits (329), Expect = 6.727e-36
Identity = 73/118 (61.86%), Postives = 82/118 (69.49%), Query Frame = 0
Query:    1 MSCRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNYDFDGGRIRVELANETPRRRDDRGFGG-GRN---RTDFRLEVSDLPDRTSWQDLK 114
            M  RIYVGNLPMDVR R++DDLFYKYGRI  IDIK PSRPPA+AFV FED RDA DA+  RD Y FDG R+RVE      R R DR     GRN      + L+V++LPD  SWQDLK
Sbjct:    1 MGGRIYVGNLPMDVRTREIDDLFYKYGRIVDIDIKLPSRPPAFAFVEFEDERDADDAIRGRDGYRFDGARLRVEPTKGGYRDRGDRNTSQFGRNLPGSGKYALDVTNLPDGASWQDLK 118          
BLAST of EWM24426.1 vs. NCBI_GenBank
Match: gi|673041869|ref|XP_008874895.1| (hypothetical protein H310_10326 [Aphanomyces invadans] >gi|574469618|gb|ETV96632.1| hypothetical protein H310_10326 [Aphanomyces invadans])

HSP 1 Score: 133.65 bits (335), Expect = 8.487e-36
Identity = 69/120 (57.50%), Postives = 87/120 (72.50%), Query Frame = 0
Query:    1 MSCRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNYDFDGGRIRVELANETPRRR---DDRGFGGGRN---RTDFRLEVSDLPDRTSWQDLK 114
            M  R+YVGNLPMDVR R+LDDLFYKYGRI  IDIK+PSRPPA+AF+ F+ PRDA+DA+  RD Y+FDG R+RVE  N   RR    D +GF  GRN      + ++V+ LP+  +WQD+K
Sbjct:    1 MCTRVYVGNLPMDVRTRELDDLFYKYGRILDIDIKQPSRPPAFAFIEFDHPRDAEDAIRGRDGYEFDGQRLRVERTNGGGRRSDRGDSKGF--GRNLMGSGKYSVDVTGLPESAAWQDVK 118          
BLAST of EWM24426.1 vs. NCBI_GenBank
Match: gi|944068666|gb|KQK04150.1| (hypothetical protein BRADI_2g11990 [Brachypodium distachyon])

HSP 1 Score: 132.494 bits (332), Expect = 1.462e-35
Identity = 70/122 (57.38%), Postives = 84/122 (68.85%), Query Frame = 0
Query:    2 SCRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNYDFDGGRIRVELAN---------ETPRRRDDRGFGGGRNRTDFRLEVSDLPDRTSWQDLK 114
            SC IYVGNLP D+RER+++DLFYKYGRI  ID+K P RPP YAFV FEDPRDA DA++ RD Y+FDG R+RVELA+         E PR       GG   R+++R+ V  LP   SWQDLK
Sbjct:    6 SCTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGYNFDGYRLRVELAHGGRGQSYQYERPRSYSSGRRGGVSRRSEYRVLVDGLPSSASWQDLK 127          
The following BLAST results are available for this feature:
BLAST of EWM24426.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105860|gb|EWM24426.1|2.771e-108100.00asf sf2-like pre-mrna splicing factor srp31, parti... [more]
gi|1002857564|ref|XP_015693317.1|4.885e-3859.17PREDICTED: serine/arginine-rich splicing factor SR... [more]
gi|1002857566|ref|XP_015693318.1|5.742e-3859.17PREDICTED: serine/arginine-rich-splicing factor SR... [more]
gi|1002857568|ref|XP_015693319.1|5.779e-3859.17PREDICTED: serine/arginine-rich splicing factor SR... [more]
gi|573943904|ref|XP_006654309.1|6.856e-3859.17PREDICTED: serine/arginine-rich-splicing factor SR... [more]
gi|695373418|ref|XP_009515045.1|2.380e-3659.83hypothetical protein PHYSODRAFT_246920 [Phytophtho... [more]
gi|970635999|gb|KUF80747.1|5.777e-3659.32Pre-mRNA-splicing factor SF2 [Phytophthora nicotia... [more]
gi|669147322|ref|XP_008609223.1|6.727e-3661.86hypothetical protein SDRG_05288 [Saprolegnia dicli... [more]
gi|673041869|ref|XP_008874895.1|8.487e-3657.50hypothetical protein H310_10326 [Aphanomyces invad... [more]
gi|944068666|gb|KQK04150.1|1.462e-3557.38hypothetical protein BRADI_2g11990 [Brachypodium d... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6261rna6261Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications