EWM24426.1, cds6246 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24426.1 vs. NCBI_GenBank
Match: gi|585105860|gb|EWM24426.1| (asf sf2-like pre-mrna splicing factor srp31, partial [Nannochloropsis gaditana]) HSP 1 Score: 313.923 bits (803), Expect = 2.771e-108 Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0 Query: 1 MSCRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNYDFDGGRIRVELANETPRRRDDRGFGGGRNRTDFRLEVSDLPDRTSWQDLKVAYLPTHLPTSLLPSLPLFLFPFLPSFNVDLPLSFPSPFPSLAV 158 MSCRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNYDFDGGRIRVELANETPRRRDDRGFGGGRNRTDFRLEVSDLPDRTSWQDLKVAYLPTHLPTSLLPSLPLFLFPFLPSFNVDLPLSFPSPFPSLAV Sbjct: 1 MSCRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNYDFDGGRIRVELANETPRRRDDRGFGGGRNRTDFRLEVSDLPDRTSWQDLKVAYLPTHLPTSLLPSLPLFLFPFLPSFNVDLPLSFPSPFPSLAV 158
BLAST of EWM24426.1 vs. NCBI_GenBank
Match: gi|1002857564|ref|XP_015693317.1| (PREDICTED: serine/arginine-rich splicing factor SR30-like isoform X1 [Oryza brachyantha]) HSP 1 Score: 140.584 bits (353), Expect = 4.885e-38 Identity = 71/120 (59.17%), Postives = 84/120 (70.00%), Query Frame = 0 Query: 2 SCRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNYDFDGGRIRVELAN-------ETPRRRDDRGFGGGRNRTDFRLEVSDLPDRTSWQDLK 114 SC IYVGNLP D+RER+++DLFYKYGRI ID+K P RPP YAFV FEDPRDA+DA+H RD YDFDG R+RVELA+ + G G RTD+R+ V+ LP SWQDLK Sbjct: 6 SCTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIHGRDAYDFDGHRLRVELAHGGRGPSFDRSSNNSSAGRRGASRRTDYRVMVTGLPSSASWQDLK 125
BLAST of EWM24426.1 vs. NCBI_GenBank
Match: gi|1002857566|ref|XP_015693318.1| (PREDICTED: serine/arginine-rich-splicing factor SR34-like isoform X2 [Oryza brachyantha]) HSP 1 Score: 140.198 bits (352), Expect = 5.742e-38 Identity = 71/120 (59.17%), Postives = 84/120 (70.00%), Query Frame = 0 Query: 2 SCRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNYDFDGGRIRVELAN-------ETPRRRDDRGFGGGRNRTDFRLEVSDLPDRTSWQDLK 114 SC IYVGNLP D+RER+++DLFYKYGRI ID+K P RPP YAFV FEDPRDA+DA+H RD YDFDG R+RVELA+ + G G RTD+R+ V+ LP SWQDLK Sbjct: 6 SCTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIHGRDAYDFDGHRLRVELAHGGRGPSFDRSSNNSSAGRRGASRRTDYRVMVTGLPSSASWQDLK 125
BLAST of EWM24426.1 vs. NCBI_GenBank
Match: gi|1002857568|ref|XP_015693319.1| (PREDICTED: serine/arginine-rich splicing factor SR30-like isoform X3 [Oryza brachyantha]) HSP 1 Score: 140.198 bits (352), Expect = 5.779e-38 Identity = 71/120 (59.17%), Postives = 84/120 (70.00%), Query Frame = 0 Query: 2 SCRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNYDFDGGRIRVELAN-------ETPRRRDDRGFGGGRNRTDFRLEVSDLPDRTSWQDLK 114 SC IYVGNLP D+RER+++DLFYKYGRI ID+K P RPP YAFV FEDPRDA+DA+H RD YDFDG R+RVELA+ + G G RTD+R+ V+ LP SWQDLK Sbjct: 6 SCTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIHGRDAYDFDGHRLRVELAHGGRGPSFDRSSNNSSAGRRGASRRTDYRVMVTGLPSSASWQDLK 125
BLAST of EWM24426.1 vs. NCBI_GenBank
Match: gi|573943904|ref|XP_006654309.1| (PREDICTED: serine/arginine-rich-splicing factor SR34-like isoform X4 [Oryza brachyantha]) HSP 1 Score: 139.813 bits (351), Expect = 6.856e-38 Identity = 71/120 (59.17%), Postives = 84/120 (70.00%), Query Frame = 0 Query: 2 SCRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNYDFDGGRIRVELAN-------ETPRRRDDRGFGGGRNRTDFRLEVSDLPDRTSWQDLK 114 SC IYVGNLP D+RER+++DLFYKYGRI ID+K P RPP YAFV FEDPRDA+DA+H RD YDFDG R+RVELA+ + G G RTD+R+ V+ LP SWQDLK Sbjct: 6 SCTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQDAIHGRDAYDFDGHRLRVELAHGGRGPSFDRSSNNSSAGRRGASRRTDYRVMVTGLPSSASWQDLK 125
BLAST of EWM24426.1 vs. NCBI_GenBank
Match: gi|695373418|ref|XP_009515045.1| (hypothetical protein PHYSODRAFT_246920 [Phytophthora sojae] >gi|348687956|gb|EGZ27770.1| hypothetical protein PHYSODRAFT_246920 [Phytophthora sojae]) HSP 1 Score: 142.51 bits (358), Expect = 2.380e-36 Identity = 70/117 (59.83%), Postives = 86/117 (73.50%), Query Frame = 0 Query: 2 SCRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNYDFDGGRIRVELANETPRRRDDRGFG----GGRNRTDFRLEVSDLPDRTSWQDLK 114 R+YVGNLPMD+R R+++D+FYKYGRIR ID+K PSRPPA+AFV FEDPRDA+DA+ RD YD+DG R+RVE AN R RG G R D+ +E+S+LP R SWQDLK Sbjct: 530 GTRVYVGNLPMDIRTREVEDIFYKYGRIRDIDVKFPSRPPAFAFVDFEDPRDAEDAIRGRDGYDYDGARLRVEPANGGRRESAPRGSGRYPRNIRGTGDYTVEISNLPPRVSWQDLK 646
BLAST of EWM24426.1 vs. NCBI_GenBank
Match: gi|970635999|gb|KUF80747.1| (Pre-mRNA-splicing factor SF2 [Phytophthora nicotianae]) HSP 1 Score: 134.035 bits (336), Expect = 5.777e-36 Identity = 70/118 (59.32%), Postives = 85/118 (72.03%), Query Frame = 0 Query: 3 CRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNYDFDGGRIRVELANETPRRRDDRGFGGG------RNRTDFRLEVSDLPDRTSWQDLK 114 R+YVGNLPMD+R R+++D+FYKYGRIR ID+K PSRPPA+AFV FED RDA+DA+ RD YD+DG R+RVE AN RR R G R +F +EVS+LP R SWQDLK Sbjct: 4 TRVYVGNLPMDIRTREVEDIFYKYGRIRDIDVKFPSRPPAFAFVDFEDARDAEDAIRGRDGYDYDGARLRVEPAN-GGRRESTRDRGSARYPRNIRGNGEFTVEVSNLPPRVSWQDLK 120
BLAST of EWM24426.1 vs. NCBI_GenBank
Match: gi|669147322|ref|XP_008609223.1| (hypothetical protein SDRG_05288 [Saprolegnia diclina VS20] >gi|530738819|gb|EQC37061.1| hypothetical protein SDRG_05288 [Saprolegnia diclina VS20]) HSP 1 Score: 131.339 bits (329), Expect = 6.727e-36 Identity = 73/118 (61.86%), Postives = 82/118 (69.49%), Query Frame = 0 Query: 1 MSCRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNYDFDGGRIRVELANETPRRRDDRGFGG-GRN---RTDFRLEVSDLPDRTSWQDLK 114 M RIYVGNLPMDVR R++DDLFYKYGRI IDIK PSRPPA+AFV FED RDA DA+ RD Y FDG R+RVE R R DR GRN + L+V++LPD SWQDLK Sbjct: 1 MGGRIYVGNLPMDVRTREIDDLFYKYGRIVDIDIKLPSRPPAFAFVEFEDERDADDAIRGRDGYRFDGARLRVEPTKGGYRDRGDRNTSQFGRNLPGSGKYALDVTNLPDGASWQDLK 118
BLAST of EWM24426.1 vs. NCBI_GenBank
Match: gi|673041869|ref|XP_008874895.1| (hypothetical protein H310_10326 [Aphanomyces invadans] >gi|574469618|gb|ETV96632.1| hypothetical protein H310_10326 [Aphanomyces invadans]) HSP 1 Score: 133.65 bits (335), Expect = 8.487e-36 Identity = 69/120 (57.50%), Postives = 87/120 (72.50%), Query Frame = 0 Query: 1 MSCRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNYDFDGGRIRVELANETPRRR---DDRGFGGGRN---RTDFRLEVSDLPDRTSWQDLK 114 M R+YVGNLPMDVR R+LDDLFYKYGRI IDIK+PSRPPA+AF+ F+ PRDA+DA+ RD Y+FDG R+RVE N RR D +GF GRN + ++V+ LP+ +WQD+K Sbjct: 1 MCTRVYVGNLPMDVRTRELDDLFYKYGRILDIDIKQPSRPPAFAFIEFDHPRDAEDAIRGRDGYEFDGQRLRVERTNGGGRRSDRGDSKGF--GRNLMGSGKYSVDVTGLPESAAWQDVK 118
BLAST of EWM24426.1 vs. NCBI_GenBank
Match: gi|944068666|gb|KQK04150.1| (hypothetical protein BRADI_2g11990 [Brachypodium distachyon]) HSP 1 Score: 132.494 bits (332), Expect = 1.462e-35 Identity = 70/122 (57.38%), Postives = 84/122 (68.85%), Query Frame = 0 Query: 2 SCRIYVGNLPMDVRERDLDDLFYKYGRIRGIDIKRPSRPPAYAFVAFEDPRDAKDAVHYRDNYDFDGGRIRVELAN---------ETPRRRDDRGFGGGRNRTDFRLEVSDLPDRTSWQDLK 114 SC IYVGNLP D+RER+++DLFYKYGRI ID+K P RPP YAFV FEDPRDA DA++ RD Y+FDG R+RVELA+ E PR GG R+++R+ V LP SWQDLK Sbjct: 6 SCTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGYNFDGYRLRVELAHGGRGQSYQYERPRSYSSGRRGGVSRRSEYRVLVDGLPSSASWQDLK 127 The following BLAST results are available for this feature:
BLAST of EWM24426.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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