rna626, rna626 (mRNA) Nannochloropsis gaditana

Overview
Namerna626
Unique Namerna626
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1328
Alignment locationCM002456.1:22128..24136 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100225g9.3527.mrna
Orig protein idgnl|cribi|Naga_100225g9.3527
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:22128..24136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100225g9gene601Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna626rna626-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30049.1cds626Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna626 ID=rna626|Name=rna626|organism=Nannochloropsis gaditana|type=mRNA|length=1328bp
GGATGGAAAACATTCTTTCTATCAGAACGATGACTTTGTCATCTCTTTCT
ATTGAATGCATGATCGACATGGAGAAAGTCTTGCAGGCGCGTTAGCGTCC
GGGGGCTGATATTTTTCTGATTCTAGCATCTTTCCCTTCGTATGACCCTC
TGTCACCTACCTCCCCGTCCTGACAGGTTGCTCCCTGGCACGCACTTCGT
TTAATCAAATAAGAGGCCTTTTCCGACAAAAAGTCGCTGTTTGTCTAGCG
AAAGATGCGCCTTTTTTTGCTCTTGGTTGCTTTCCCGGCTCTCGTCTCTT
CATTTGTCGGAATGTTACCCAGCCGGCACAAGCAGTCGCAAGGGCGGCAA
TCACAGCTTCGAATGATGGCAAAGCTCCCAAAGGTGGCAGTAATGGTGAA
TGGCCTACCAGGCGCCATGGGTAAGGAAGTTGCGGCAGCATGCTTGCGAC
GAGGATTGGAGGTGTGCTCTGTTGGCCTAACGGGACCGCAAGTCGATGAG
GAATGTGTGGATGTGGACGATGGCGAGGGAGGAAAACCGCAGACGATTCG
GCTGGTCAAAGGGCCGGTAACGGGCGCCGGAGACGAGGAATGCGATGCGA
GGCTCCAAGGCCTGGTAGCGGGCTACCGGGAGAGCGGGACACGTTTAATT
GCCGTCGACTACACGCACCCTACTGCTGTGAACCCCAACGGCATGCTCTA
TGCTCGCCACAAAATGGACTTTGTCATGGGCACGACGGGCGGGGATCGAG
ATAAGCTTTTGAAGGACGTAGAAGAGGCAGGCATCTACGCCGTCATCGCC
CCAAACATGGCCAAGCAGATTGTCGCCTTGCAGGCGGGGCTGGAGACGAT
GGCCGGGACTTTTCCGGGGGCCTTCGAGGGCTACAATCTTCGGGTGGTCG
AGTCGCATCAAAGCAGCAAAGCGGACACCAGTGGGACCGCTAAGGCTTTG
ATTGCCTCCTTCGGGACTCTGGTGGGCAAACCCTATAAGGTGGAGGACGT
GATTGCCATGATCCGAGACAGAGAAGGACAGCTAGAATTTGGCGTTCCCG
AAGCGGGACTAGGCGGACACGCTTTTCATACTTACCAGTTATTATCGCCA
GATGGAAGTGTGGAGTTTCAATTTCGCCACAACGTAGTTGGCCGGCGGAT
TTACGCGGAGGGTACTGTCGACGCTCTCACTTACCTGGCACAGCAGCACG
GTCCCGATAAAAAGGTTTTCAATATGGTTGACGTCTTAAAAGCCGGTGCC
ATGAAGTAGGGGAAGGGCTAAAGTATGCAGGCAAGGAAGGAGAGGTGCAA
AAAGAAGCAGTAAAAAGGACCAGTAGCT
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protein sequence of rna626

>rna626-protein ID=rna626-protein|Name=rna626|organism=Nannochloropsis gaditana|type=polypeptide|length=175bp
MLSVISRRCLQTQKRFLLRSSASVHPTTSFSLKACATWPSSRRRPLSTTA
EAPPPPFPVASSLRLHDATTTKEDALVAWRTRRVIAEVRHDPQKLLMLLE
MEGMDAYNVVILVSRLAQACEGKMEATTAVQSDPRFAQLVEQVLGGKGGR
VVKDMSELQMDSVRASLRLLGVEGA
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mRNA from alignment at CM002456.1:22128..24136-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna626 ID=rna626|Name=rna626|organism=Nannochloropsis gaditana|type=mRNA|length=2009bp|location=Sequence derived from alignment at CM002456.1:22128..24136- (Nannochloropsis gaditana)
ATCCCTCCACACTTTACAAAACCTGTAGACAAAGCAATTGACCATCTTTA
TTCCTCTTCTCTGACATTCATTCCCCGAATTTCAGCGAGTGTACCCATCG
CGTTCGATAAATGCGTTCGGCTTGTGTGCATGTGCAACGTGGTGGGAGCT
GGTGGCTGCAACACAGAGCGAAATTGGAATGAGCAGGTCCTAAATTTCTG
ACTCTTGAATCTTAGTCATCCAGAAAGACGTCTATGGACGAAAGATGGAT
TCTTGTCACATTTTGAGTGTACGAATGAGCGCAATTCCAATTGCTTGTCT
TGACCCGCAACAGAACAGTCGACCTTCCTCTTTGTTCCTCCTTTAGCCCG
GGAGCTTTCCAGAAAGACCTCCTCATACCCCTCTTTACGAATTGTCCATG
CGTTCTTTCGTAAACAGATCTCACAAGTCATGTTGAGCGTCATAAGCCGT
CGCTGTCTTCAAACCCAGAAGCGTTTTTTGCTTCGCTCAAGTGCATCAGT
TCATCCCACTACATCTTTCTCACTCAAAGGTAAGTTTCCGTGACGCGCTA
GCTTAGAAAAACCCAAGTCATTTGACGACACTTGTCATACTAAGCTTTGC
AGTATTGTCTTAACATTCGTTTCGTTCACATAACCACAGCTTGTGCCACG
TGGCCCTCCTCTCGAAGACGTCCTCTGTCTACTACAGCCGAAGCTCCCCC
CCCTCCCTTTCCGGTTGCTTCCTCTCTGCGTCTTCACGATGCGACCACAA
CCAAAGAAGATGCATTGGTCGCGTGGCGCACACGCCGGGTCATAGCAGAA
GTTCGACACGACCCTCAGAAACTGTTAATGCTCTTGGAAATGGAGGGAAT
GGACGCGTACAACGTCGTAATACTTGTTTCACGGTTGGCTCAGGCGTGCG
AAGGGAAGATGGAGGCCACCACGGCCGTGCAAAGTGACCCGCGCTTTGCG
CAGCTGGTAGAACAAGTGTTGGGAGGGAAAGGCGGGAGGGTGGTCAAAGA
TATGAGTGAACTGCAGATGGACAGTGTGCGGGCCAGCCTTCGTCTTCTGG
GTGTGGAAGGCGCGTGAAAGCCTACGTTAATAGGGCGGGATGAAGAGCGA
ACACCGATGAAACACCAAAGAATAAGTTGGTATAACCATTCGGTGGTATG
GATAGTAAATGGGAGAAAAACTAATGCTTCACCTGGCGCAGTGTTATACA
AAATTTCGACATAATTTCAGATCAGTGTCAGCCAGCCAGCGCAGCACGCC
GCTACTTTTTGAAAATCTGACGGCAGAGAAGGCCGAGTCAAGCATTTAAC
ACTGAAGAATGGTTTTCTTTGAGAACGCTGTGTCATGATGGGGAAGTTTC
TGGTTGGGGAAATGTCTGTCCATTTTACAGTCATTCCGACCACATTAACG
CCGAAGGACCATTGCTGTCTTACGTGTGTAACTGCTTAGTAGAATTCATG
GATTCTGTAATGCTCGTTGCACATTTAGACATGAAAGAAGAAAATGTGAC
GAGCACTGGACAAACCTGTGTCTGAACAAATAGACCTCAAGGGCGCCTCG
AGGTGCGTAGTTGATCGAGCATCCGCGAAACCATGTCATATTTGGGTAAA
TTATATTGCACAAGGGAGCCTATAACAGCCATGTATGTGGTGGCAAGGGC
CGAAAAAGGTCAAAAGATTGCGAGAATCTCATCACAAGGTAGCGTTTCCC
GGACCAGCGAATGGAAGAGAAAGTGATGGCACCAGAAGAGAAAAAAATAC
GACAGAAATAGCAAGCTACTGGTCCTTTTTACTGCTTCTTTTTGCACCTC
TCCTTCCTTGCCTGCATACTTTAGCCCTTCCCCTACTTCATGGCACCGGC
TTTTAAGACGTCAACCATATTGAAAACCTTTTTATCGGGACCGTGCTGCT
GTGCCAGGTAAGTGAGAGCGTCGACAGTACCCTCCGCGTAAATCCGCCGG
CCAACTACGTTGTGGCGAAATTGAAACTCCACACTGCAGAGAAATGGAAA
GCCCAGGAA
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Coding sequence (CDS) from alignment at CM002456.1:22128..24136-

>rna626 ID=rna626|Name=rna626|organism=Nannochloropsis gaditana|type=CDS|length=1056bp|location=Sequence derived from alignment at CM002456.1:22128..24136- (Nannochloropsis gaditana)
CTTGTGCCACGTGGCCCTCCTCTCGAAGACGTCCTCTGTCTACTACAGCC
GAAGCTCCCCCCCCTCCCTTTCCGGTTGCTTCCTCTCTGCGTCTTCACGA
TGCGACCACAACCAAAGAAGATGCATTGGTCGCGTGGCGCACACGCCGGG
TCATAGCAGAAGTTCGACACGACCCTCAGAAACTGTTAATGCTCTTGGAA
ATGGAGGGAATGGACGCGTACAACGTCGTAATACTTGTTTCACGGTTGGC
TCAGGCGTGCGAAGGGAAGATGGAGGCCACCACGGCCGTGCAAAGTGACC
CGCGCTTTGCGCAGCTGGTAGAACAAGTGTTGGGAGGGAAAGGCGGGAGG
GTGGTCAAAGATATGAGTGAACTGCAGATGGACAGTGTGCGGGCCAGCCT
TCGTCTTCTGGGTGTGGAAGGCGCGTGAATGTTGAGCGTCATAAGCCGTC
GCTGTCTTCAAACCCAGAAGCGTTTTTTGCTTCGCTCAAGTGCATCAGTT
CATCCCACTACATCTTTCTCACTCAAAGCTTGTGCCACGTGGCCCTCCTC
TCGAAGACGTCCTCTGTCTACTACAGCCGAAGCTCCCCCCCCTCCCTTTC
CGGTTGCTTCCTCTCTGCGTCTTCACGATGCGACCACAACCAAAGAAGAT
GCATTGGTCGCGTGGCGCACACGCCGGGTCATAGCAGAAGTTCGACACGA
CCCTCAGAAACTGTTAATGCTCTTGGAAATGGAGGGAATGGACGCGTACA
ACGTCGTAATACTTGTTTCACGGTTGGCTCAGGCGTGCGAAGGGAAGATG
GAGGCCACCACGGCCGTGCAAAGTGACCCGCGCTTTGCGCAGCTGGTAGA
ACAAGTGTTGGGAGGGAAAGGCGGGAGGGTGGTCAAAGATATGAGTGAAC
TGCAGATGGACAGTGTGCGGGCCAGCCTTCGTCTTCTGGGTGTGGAAGGC
GCGTGAATGTTGAGCGTCATAAGCCGTCGCTGTCTTCAAACCCAGAAGCG
TTTTTTGCTTCGCTCAAGTGCATCAGTTCATCCCACTACATCTTTCTCAC
TCAAAG
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Synonyms
Publications