EWM30049.1, cds626 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM30049.1
Unique Name	cds626
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002456.1:23608..23707 -
Alignment location	CM002456.1:23070..23497 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM30049.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100225g9.3527.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:23608..23707 -
CM002456.1	supercontig	CM002456.1:23070..23497 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

[Close]

BLAST of EWM30049.1 vs. NCBI_GenBank
Match: gi|585112679|gb|EWM30049.1| (hypothetical protein Naga_100225g9 [Nannochloropsis gaditana])

HSP 1 Score: 354.755 bits (909), Expect = 7.097e-124
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0

Query:    1 MLSVISRRCLQTQKRFLLRSSASVHPTTSFSLKACATWPSSRRRPLSTTAEAPPPPFPVASSLRLHDATTTKEDALVAWRTRRVIAEVRHDPQKLLMLLEMEGMDAYNVVILVSRLAQACEGKMEATTAVQSDPRFAQLVEQVLGGKGGRVVKDMSELQMDSVRASLRLLGVEGA 175
            MLSVISRRCLQTQKRFLLRSSASVHPTTSFSLKACATWPSSRRRPLSTTAEAPPPPFPVASSLRLHDATTTKEDALVAWRTRRVIAEVRHDPQKLLMLLEMEGMDAYNVVILVSRLAQACEGKMEATTAVQSDPRFAQLVEQVLGGKGGRVVKDMSELQMDSVRASLRLLGVEGA
Sbjct:    1 MLSVISRRCLQTQKRFLLRSSASVHPTTSFSLKACATWPSSRRRPLSTTAEAPPPPFPVASSLRLHDATTTKEDALVAWRTRRVIAEVRHDPQKLLMLLEMEGMDAYNVVILVSRLAQACEGKMEATTAVQSDPRFAQLVEQVLGGKGGRVVKDMSELQMDSVRASLRLLGVEGA 175

The following BLAST results are available for this feature:

BLAST of EWM30049.1 vs. NCBI_GenBank

BLAST of EWM30049.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585112679\|gb\|EWM30049.1\|	7.097e-124	100.00	hypothetical protein Naga_100225g9 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna626	rna626	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications