rna6255, rna6255 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6255
Unique Name	rna6255
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3056
Alignment location	CM002468.1:106888..108149 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101474g1.4587.mrna
Orig protein id	gnl\|cribi\|Naga_101474g1.4587
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:106888..108149 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101474g1	gene6048	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6255	rna6255-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24433.1	cds6240	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:106888..108149+
coding sequence from alignment at CM002468.1:106888..108149+

mRNA sequence

>rna6255 ID=rna6255|Name=rna6255|organism=Nannochloropsis gaditana|type=mRNA|length=3056bp
ATGGGAGAAGCTTATGGTGACGATAAAAGTGATGACCTTGGAATAAGTGG
TGTGACGGATGGAGAAGTAGATGACAGCGAGGCCTTTTTATTGGAAAAAT
CGGCCTGGGCAGGCCCGTCGCCCTCGTCGAAAAAACCCAATGACGATAAA
TTGCTTACTCCAGCACGAACATCTCCTCCAGATCAAGCAAGTGTGCAACC
CTATTCTAGTTGTTGGCATCGTCTCACTCCTTATTACGCCCTAGTAACAC
TCGGAGCTTTATACCTTGGTGCCCGGTCGTACATACATTCTCAGCACAAC
TCGAGTCCGCCTGATGCCATCATGAATATTTCATTCAACAGTTCCTCGCT
GAGAAGTAAGTCATCATTTTACACCCAAGTGCTCGATCCAAATAAAAACA
TTCACCCGCCGGTCAAGGTAATTGAGACCTCCCGCGTACCTGAAGTGCCA
TCTAGCAGTTATCACAACCTGTCGCTTACTCCAACTTCCAAAGCCGCTGA
CATGCCACCCTTTCCCTCATCAGCTCTCTCCAATTCGACTAAAATTTTAC
TACGTGATGGTCGAAATGCATCTGGTACCCAGCCAAAATCGATGTCGTCC
TCCTCTTCCATGCCTTCCGTTCCTCCAGGCGCCTCTCCCTCCAACTTCAT
AACATCCTCGACTTCTCATGCCTCTATCATCTCACCTTCGGGTTCGGAAC
CCACCCACGACTTGGCCCAAACTCCTTTACATATTCAAGCTTACAGTGCT
GACTACGGAGCAATAGCTGAAGAGACTCTGCAGCTTTATGGCTGGGATAT
GATCATTGAGGCAAAACGTCCTACGACCCTGCGTGTCCTGAACCCTCTCC
ACACACTAGATTCAAGTCCACTGTCAAGTCCTCCCACCCGTCGCACCTCC
TCCAGTAGGTATCATGAATTTGGAGATATGACGTACGATTTCGAGGTTCA
AGAGGAGGGTGGTAACGTGGTGTTCTCTCGCCGTGGCGTCGGCCGCCTGG
TTCACGATGTCACCTGCACCCAGGCCGGAAGCACGCTCACCGTCCAGGTT
ACCGAGCGCCCTTCCCTCCGAAGCTACCGGACTTTCTCTGCCGTTTGTAA
GGAGGTGCGGCGCGAAATGCGGACATTGACGCGGGACGATCGTCAGACGT
ACCTGGAGAGCCTTGACATCTTTTACCGAATACCTCTAGCAGACGGTCGG
GCGCGTTACGGGCCTCGATTCGCAAACAATGCGCTTTTGACCGCTGCGCA
CAGCAGTGAAATATGGTGCTTGCATGATCCCAACCAGTTTATGGCTGTCC
ACTCTGCTTTTATGCACTGGGCGGAGCAGAACATGAAGCGGATCAGTGCC
GTGGAGAGTGGGGAAAAAGGCGAAGCCGACAGAAAGAGGCAACCGGTTGT
GCTCAATGAGACCGCTCCATTACGTTCGGTCGGAGAAAAATCAGCACATG
TCCCTCACCTTGCCTTGGGCGCTATCCCCTACTGGGATTTCCACATTGAC
ACCCAGACGCTTGGTTCCACCTGGTGGTGGGGCAACCCGTTCTTTCAAGC
CGACGACAACGAAGGGTTCGGGCCCATAGGGACCAGTCCCACCACTGGTC
ATGTCGTGGAGGGAAGCGGTCGCTTTGCCCGGATGCCGATGGTGCGAGCG
GAAGATCTGCCGGAAGACGTGATGCGGGCGTACGATCCCGGTGTGGATGC
TTATGGATTTGTCACGTCCAAATCTTTTACTTTGAACTCCAGCCCTTTTG
TCACCCGCAGTGAGACTGTGTGCGACTTGCCCATGGCCCTGCCAATGGCA
CCGGCGCAGAACCTCTTTGACTGCTACGACAGCTTTAATACGTGGAAGGA
AGCCACCTCCTGCCTGTACATGCAGGTACATCTGCAGCTACACTCGCACT
TTGGAGGCGGTGCTTGGCATTGTGGGGTCAACCTGAAGGAATTTCAAAAG
TCGTTTCCCCAATACTCTTCCGAGCTCCTCTCTTTTTTAGGCGTTTCAGG
TCGTGCTCAAGGCTTGAGAGGGTTCCGGGAATGCGATAGGGAAGCTGGTC
GCTGCCATTGTCCCGGACTGGACTCGGAGAACATGCCATATTACAAATTG
TACCGGCTTCTCGCCAGCGATTTGCGCCAAGTCAGGCGAGCTTGGCCTGG
AGAATTCTTCTTGGCACCCTACCGAGGGACAGAAGAGCTCCGGTTTTTGA
AAAACGACGGAAATTTTCACGACTGGGAAGACCAAGACCGCTTACTGCGG
ATGGTGGCACGTTTATGGTGCGAAACAGCCGTGAACGGACATTTTGTCTC
CATGGCCTCCATCAACGACCCAGTCTTTTATGCTGCACATGTATATTTCG
ACCGCCTTTCTCATTTCTTGGCCTTGTCACCGGCCTTTATGGAGCGCGGT
TTCAATCGAACTTGGAGTAAAGCGGAAGGCGGCGGAGAGGGGTTGCAAGA
GAAGGGAGAGGTAAAACATCGACAAAGGGAAGCAGACGATGCTGACTGGG
AAAGAGATTTTGAAGGGAGAGGAGAAATCGAAGACGATGTCATGGCAAGG
AATCGACAAGTGAGATATAGACGCGGACGGTTGAGGAGACGGGTGGAAGC
AGGGGATCGGGAGACTTCGAGCGCCCGAGGAGCAACCCAGCAAGTCGAAC
AAAGAGATGTACCGGAGGATTGGGATTCCCCCAAAGAGAGCATTGCGTCT
GACGGCGAAATGCGCGAATGTCTTGGCGGTCGATACACGGACCCTTCGCC
GTTCACGCCGTATCTGATGGCAGCCGCCGATGAGGACGAGGAAGAGAGGG
TTGCCAAAGAGCAAGATCTATACCCAGGGCGGCACTACAGCATGAAAGAA
ATAGACGAGCTCATGCACCCGCTCCACCCGTCCCTTCCCTATGTCTATGA
TGACCTCGTACATTGGGGAGGGAAGCAATGGGACCCGAGTAGGACTGAGT
AGCAAAATTTCAGCGCGTGAGATATTGTATTGTAAGAATGAAAGACCATA
AGCATCAAGGGCGATGTGTAAAATAAAAGCAAAGGATTAATAAGATGTAA
ACAACG

protein sequence of rna6255

>rna6255-protein ID=rna6255-protein|Name=rna6255|organism=Nannochloropsis gaditana|type=polypeptide|length=156bp
MPRGTLKSNSYSSSTGRQPLLPQASTLDGPAPGKNGGGAGENTPYGGRPN
VIPPATWEEREKRKTEAEGTRRTGTGHHRAMRKLPLVGLGVFDLLFLAAT
VLGVYQGHLKDFWADHYTNYSFEHALLDAMGVPAATTGQTGRAGGKAASI
RRGGRR

mRNA from alignment at CM002468.1:106888..108149+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6255 ID=rna6255|Name=rna6255|organism=Nannochloropsis gaditana|type=mRNA|length=1262bp|location=Sequence derived from alignment at CM002468.1:106888..108149+ (Nannochloropsis gaditana)
GGGATGATACGATGAGAAAGTGTGCACGCCCATGCACACTGCCTCGCGCA
TGACTAGCACACAAGGCGCTGCAACACTTGAGCATTTGCCCCCGTACACA
CACCCATGACCCCCTTACAAGACAGAAACACGGAAGAAGGCGGTCCCAAT
ATTCAGTATCATGCCGCGTGGTACGCTGAAGAGTAATTCCTACAGCAGCA
GCACAGGGAGAcaacctctccttcctcaagcCAGTACCTTGGATGGCCCT
GCCCCCGGGAAAAACGGTGGCGGTGCCGGCGAAAACACGCCGTACGGTAA
GAGACCCAAAACTGATGCTGGAGACAAGCGAGCGATACATGCCATGTCGG
GAGTTTGCTCCACCcacgggaagaaagcgaaggcCTTCCCTGGTGTCGGA
GGAGTCTCATGCCCCGTGACTCCCACGTCCGTGCCCTTCCACCAGGCGGC
CGGCCGAACGTCATCCCTCCTGCAacctgggaggaaagggagaagagaaa
gacagaagcggaagggacgaggcggacAGGGACAGGGCACCACAGGGCCA
TGCGAAAGCTGCCGCTGGTGGGTTTGGGAGTCTTTGACCTGCTGTTCCTG
GCGGCCACGGTGCTGGGAGTGTATCAGGGGCATTTGAAAGATTTCTGGGC
AGATCACTACACGAAGTAAGTtggaagggagcggggagatgtgatgagga
gggagggagggatgggggggggcgcctaCTGCGTgtggagcgggggggag
gtgcgacTCTTTATAATTCAGAGATTATTCAGGTATAATGGCACCGCGGA
TGCGTCCTTGTTCTTGGCGCCTTTTGTTGCCCTTTCTCATCCTTGGCGCC
CgggtccttcccttccttccacctttTCCACCACGGCCGCCCTGCCTGCT
tatctgcccctccctgcccttccctccggatTCATCACTTGTCATTCGCG
CGAtcgctcccctcttttcatcttccttctcgcctctttccctcccttcg
atcctttctttctccctctgcaGCTACAGCTTCGAGCACGCCCTCCTGGA
CGCCATGGGGGTCGTGGGCCTCcgaggcctcctcctcgtcctccttccct
ccctccctccctccctcccttcccctcccctccgccactttctctttttg
tacgtgctctcctccctcgtctttctcATCGTCAAAGCCGGCTGCTACGA
CTGggcagacggggagggcgggggggaaggcggcttCTATACGAcgcggg
gggcggaggtga

Coding sequence (CDS) from alignment at CM002468.1:106888..108149+

>rna6255 ID=rna6255|Name=rna6255|organism=Nannochloropsis gaditana|type=CDS|length=1884bp|location=Sequence derived from alignment at CM002468.1:106888..108149+ (Nannochloropsis gaditana)
ATGCCGCGTGGTACGCTGAAGAGTAATTCCTACAGCAGCAGCACAGGGAG
AcaacctctccttcctcaagcCAGTACCTTGGATGGCCCTGCCCCCGGGA
AAAACGGTGGCGGTGCCGGCGAAAACACGCCGTACGGCGGCCGGCCGAAC
GTCATCCCTCCTGCAacctgggaggaaagggagaagagaaagacagaagc
ggaagggacgaggcggacAGGGACAGGGCACCACAGGGCCATGCGAAAGC
TGCCGCTGGTGGGTTTGGGAGTCTTTGACCTGCTGTTCCTGGCGGCCACG
GTGCTGGGAGTGTATCAGGGGCATTTGAAAGATTTCTGGGCAGATCACTA
CACGAACTACAGCTTCGAGCACGCCCTCCTGGACGCCATGGGGGTCCCGG
CTGCTACGACTGggcagacggggagggcgggggggaaggcggcttCTATA
CGAcgcggggggcggaggtgaATGCCGCGTGGTACGCTGAAGAGTAATTC
CTACAGCAGCAGCACAGGGAGAcaacctctccttcctcaagcCAGTACCT
TGGATGGCCCTGCCCCCGGGAAAAACGGTGGCGGTGCCGGCGAAAACACG
CCGTACGGCGGCCGGCCGAACGTCATCCCTCCTGCAacctgggaggaaag
ggagaagagaaagacagaagcggaagggacgaggcggacAGGGACAGGGC
ACCACAGGGCCATGCGAAAGCTGCCGCTGGTGGGTTTGGGAGTCTTTGAC
CTGCTGTTCCTGGCGGCCACGGTGCTGGGAGTGTATCAGGGGCATTTGAA
AGATTTCTGGGCAGATCACTACACGAACTACAGCTTCGAGCACGCCCTCC
TGGACGCCATGGGGGTCCCGGCTGCTACGACTGggcagacggggagggcg
ggggggaaggcggcttCTATACGAcgcggggggcggaggtgaATGCCGCG
TGGTACGCTGAAGAGTAATTCCTACAGCAGCAGCACAGGGAGAcaacctc
tccttcctcaagcCAGTACCTTGGATGGCCCTGCCCCCGGGAAAAACGGT
GGCGGTGCCGGCGAAAACACGCCGTACGGCGGCCGGCCGAACGTCATCCC
TCCTGCAacctgggaggaaagggagaagagaaagacagaagcggaaggga
cgaggcggacAGGGACAGGGCACCACAGGGCCATGCGAAAGCTGCCGCTG
GTGGGTTTGGGAGTCTTTGACCTGCTGTTCCTGGCGGCCACGGTGCTGGG
AGTGTATCAGGGGCATTTGAAAGATTTCTGGGCAGATCACTACACGAACT
ACAGCTTCGAGCACGCCCTCCTGGACGCCATGGGGGTCCCGGCTGCTACG
ACTGggcagacggggagggcgggggggaaggcggcttCTATACGAcgcgg
ggggcggaggtgaATGCCGCGTGGTACGCTGAAGAGTAATTCCTACAGCA
GCAGCACAGGGAGAcaacctctccttcctcaagcCAGTACCTTGGATGGC
CCTGCCCCCGGGAAAAACGGTGGCGGTGCCGGCGAAAACACGCCGTACGG
CGGCCGGCCGAACGTCATCCCTCCTGCAacctgggaggaaagggagaaga
gaaagacagaagcggaagggacgaggcggacAGGGACAGGGCACCACAGG
GCCATGCGAAAGCTGCCGCTGGTGGGTTTGGGAGTCTTTGACCTGCTGTT
CCTGGCGGCCACGGTGCTGGGAGTGTATCAGGGGCATTTGAAAGATTTCT
GGGCAGATCACTACACGAACTACAGCTTCGAGCACGCCCTCCTGGACGCC
ATGGGGGTCCCGGCTGCTACGACTGggcagacggggagggcgggggggaa
ggcggcttCTATACGAcgcggggggcggaggtga

Synonyms

Publications