rna6250, rna6250 (mRNA) Nannochloropsis gaditana

Overview
Namerna6250
Unique Namerna6250
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length648
Alignment locationCM002468.1:88971..89787 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101643g2.2598.mrna
Orig protein idgnl|cribi|Naga_101643g2.2598
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:88971..89787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101643g2gene6043Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6250rna6250-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24439.1cds6235Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6250 ID=rna6250|Name=rna6250|organism=Nannochloropsis gaditana|type=mRNA|length=648bp
ACGCCCTAGCACACCGCCTAAACCCTCGTTTCCCCGACTAAACACAAATA
CGGGCCTCGTCCACCGCGGTTCCCCACCCCTCTCCTGTCATTTTCCACGT
ATTTGAGGCCCCATACGACCATGAAGACCTGGTTTGGATGAAACATGCAT
GACTTCAAACGTCTTGCCCCCCCCCCCCTTATCTTCTCAGCGTGGCTCCT
TCTAAGCCGCCGTGATTCACAAGCTTCCGCATTTCCTTTCCGTTGCCCAC
AGGAGAGGAAGAGAGGGGAAGACACCATGTCCTCTCTTTCCCTCCTTGGC
AAGAGGGCGATTCTTCTAGCCCGGCGGCCCGTACCGTCTGGGTGCAGGTC
GTTCACACGCTCGGCTGTTCGTGCAGGCGGCGGGGCTGGCCACAACCCTG
GTCCCCCCATGCAGCCATTCAAAAGGACAGCAATGCCCGAAGGGCCCCTG
TACGAGGAGCACGAATTGATTTGGGACGACCGTGTGGCTGCGGAAATGTG
CATTGATTTCGACGCCAGCTTTGTGCCCACGAGGGAGGTAAGGATTGGGA
AAAAGAGAGGGGGCGGTTGTCTTTGCCATGGGCATGCGGGACGGAGGGGA
GGGAGGGAGAGGGGCCAGGTCACTCTTGAGACTTAACGGTCCTCCCTC
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protein sequence of rna6250

>rna6250-protein ID=rna6250-protein|Name=rna6250|organism=Nannochloropsis gaditana|type=polypeptide|length=121bp
MRRLRPFFAFPCCSLLFLPLLSFFLPAAAEEAPLCGTSPAFLWGGRENYF
GGREEYAFSSVGHDEVVESVRSLQRLDTPPEVVVVLVTSASPDVPSPSSL
PSLKAAVQEAVSSRVIPCLTR
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mRNA from alignment at CM002468.1:88971..89787+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6250 ID=rna6250|Name=rna6250|organism=Nannochloropsis gaditana|type=mRNA|length=817bp|location=Sequence derived from alignment at CM002468.1:88971..89787+ (Nannochloropsis gaditana)
TCGTTGTCAAAGTTTcacttctcttttccctcaaCGCATACATCACCAGG
AATGCGACGGCTAAGACCATTTTTCGCCTTCCCATGCTGcagtctcctct
tcctccctctcctctccttcttcctgcctgCGGCCGCCGAGGAAGCTCCT
CTATGTGGCACTTCTCCAGCTTTCTTATGGGGCGGCCGTGAAAATTACtt
tgggggaagggaagagtaTGCGTTCAGCAGGTGGGGGACCGGCAGGGCAA
GTTGAGGggcgggaatggaaggggatGACAAGGACTCTCGGAGGAGATTC
CAAGTGGTTTTAACTTCATAGGGTTTATCATTTTTTCTCATTCATCCAGT
GTCGGTCACGACGAAGTTGTGGAGAGCGTCCGGAGTCTTCAACGCCTAGA
CACGCCACCTGAGGTAGGAGAATTGGGAGAGGCATGGGCACGGCCACGGG
GCCGTAATTTTTCTTACAACACCACAGAGTCTTATAGGGTGCCTGGTCAA
ACACGTGTACCGTCACCCTCCTGGCTTTCCCTGCCTTCATGCATACCAGC
AACATGCTCGTTCCCACTTCCCTCGCACGTATTAGTCTATTTCCTGACCC
CAAGGTCCAGGAGTGAGCGTTTGGAGCCTCCTCtgcatctttcctttcct
accCGTCGCCTCCTCACCCTGATATTCAAACTCTCAGGTGGTCGTCGTCC
TTGTGACATCTGCCTCCCCGGacgtcccctccccatcctccctcccgtcc
ttaAAAGCGGCCGTCCAGGAAGCGGTCTCCTCGCGAGTCATTCCCTGCCT
GAccaggtgagggaggg
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Coding sequence (CDS) from alignment at CM002468.1:88971..89787+

>rna6250 ID=rna6250|Name=rna6250|organism=Nannochloropsis gaditana|type=CDS|length=1098bp|location=Sequence derived from alignment at CM002468.1:88971..89787+ (Nannochloropsis gaditana)
ATGCGACGGCTAAGACCATTTTTCGCCTTCCCATGCTGcagtctcctctt
cctccctctcctctccttcttcctgcctgCGGCCGCCGAGGAAGCTCCTC
TATGTGGCACTTCTCCAGCTTTCTTATGGGGCGGCCGTGAAAATTACttt
gggggaagggaagagtaTGCGTTCAGCAGTGTCGGTCACGACGAAGTTGT
GGAGAGCGTCCGGAGTCTTCAACGCCTAGACACGCCACCTGAGGTGGTCG
TCGTCCTTGTGACATCTGCCTCCCCGGacgtcccctccccatcctccctc
ccgtccttaAAAGCGGCCGTCCAGGAAGCGGTCTCCTCGCGAGTCATTCC
CTGCCTGAccaggtgaATGCGACGGCTAAGACCATTTTTCGCCTTCCCAT
GCTGcagtctcctcttcctccctctcctctccttcttcctgcctgCGGCC
GCCGAGGAAGCTCCTCTATGTGGCACTTCTCCAGCTTTCTTATGGGGCGG
CCGTGAAAATTACtttgggggaagggaagagtaTGCGTTCAGCAGTGTCG
GTCACGACGAAGTTGTGGAGAGCGTCCGGAGTCTTCAACGCCTAGACACG
CCACCTGAGGTGGTCGTCGTCCTTGTGACATCTGCCTCCCCGGacgtccc
ctccccatcctccctcccgtccttaAAAGCGGCCGTCCAGGAAGCGGTCT
CCTCGCGAGTCATTCCCTGCCTGAccaggtgaATGCGACGGCTAAGACCA
TTTTTCGCCTTCCCATGCTGcagtctcctcttcctccctctcctctcctt
cttcctgcctgCGGCCGCCGAGGAAGCTCCTCTATGTGGCACTTCTCCAG
CTTTCTTATGGGGCGGCCGTGAAAATTACtttgggggaagggaagagtaT
GCGTTCAGCAGTGTCGGTCACGACGAAGTTGTGGAGAGCGTCCGGAGTCT
TCAACGCCTAGACACGCCACCTGAGGTGGTCGTCGTCCTTGTGACATCTG
CCTCCCCGGacgtcccctccccatcctccctcccgtccttaAAAGCGGCC
GTCCAGGAAGCGGTCTCCTCGCGAGTCATTCCCTGCCTGAccaggtga
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Synonyms
Publications