EWM24439.1, cds6235 (CDS) Nannochloropsis gaditana

Overview
NameEWM24439.1
Unique Namecds6235
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:89022..89200 +
Alignment locationCM002468.1:89320..89383 +
Alignment locationCM002468.1:89658..89780 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24439.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101643g2.2598.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:89022..89200 +
CM002468.1supercontigCM002468.1:89320..89383 +
CM002468.1supercontigCM002468.1:89658..89780 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM24439.1 vs. NCBI_GenBank
Match: gi|585105883|gb|EWM24439.1| (hypothetical protein Naga_101643g2 [Nannochloropsis gaditana])

HSP 1 Score: 239.195 bits (609), Expect = 7.681e-80
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 
Query:    1 MRRLRPFFAFPCCSLLFLPLLSFFLPAAAEEAPLCGTSPAFLWGGRENYFGGREEYAFSSVGHDEVVESVRSLQRLDTPPEVVVVLVTSASPDVPSPSSLPSLKAAVQEAVSSRVIPCLTR 121
            MRRLRPFFAFPCCSLLFLPLLSFFLPAAAEEAPLCGTSPAFLWGGRENYFGGREEYAFSSVGHDEVVESVRSLQRLDTPPEVVVVLVTSASPDVPSPSSLPSLKAAVQEAVSSRVIPCLTR
Sbjct:    1 MRRLRPFFAFPCCSLLFLPLLSFFLPAAAEEAPLCGTSPAFLWGGRENYFGGREEYAFSSVGHDEVVESVRSLQRLDTPPEVVVVLVTSASPDVPSPSSLPSLKAAVQEAVSSRVIPCLTR 121
The following BLAST results are available for this feature:
BLAST of EWM24439.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105883|gb|EWM24439.1|7.681e-80100.00hypothetical protein Naga_101643g2 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6250rna6250Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications