rna6245, rna6245 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6245
Unique Name	rna6245
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1093
Alignment location	CM002468.1:74737..75874 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101370g1.4140.mrna
Orig protein id	gnl\|cribi\|Naga_101370g1.4140
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:74737..75874 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101370g1	gene6037	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6245	rna6245-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24443.1	cds6230	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:74737..75874-
coding sequence from alignment at CM002468.1:74737..75874-

mRNA sequence

>rna6245 ID=rna6245|Name=rna6245|organism=Nannochloropsis gaditana|type=mRNA|length=1093bp
GATGCCACAGGTGTGGTACGAAGGCAAGATCATCGAACGGGAGGATGATG
TCGTCAAGGTGCATTTCCACAAATGGCCAAGCAAGTACGACGAGTGGATC
CCTCTCCGAGCCAAACGCTTCGCGCCCCATAAATGCTTCACTGCCGTCAC
AAAGGACTTCATTAAACGGAAGCGCGCGGAGAGGAGAGACGGGGAGGAAG
ACGAGGAGGAGGACGAGGAGGAGGACGAGGCACAGAAACAGCAAGAGGAG
GAGGAGGAAAGTGAAGAGGAGCCGGGTAGACGCCGGAAGCGCCGGTGTGT
GAAACGGAAGGAAGAAGCAAAGGAGGAGTTTATGAGAGCCAAGCAGGAAC
GCCGTGAGAAAAAGAGGGCGAGGGAATCATCGAAGAAAAATGATGAGGGA
CGGGCGGAAGAGCGTGGGGAGTGTGGGTGGGAGGGCAGGAGGGAGGGCGG
GAAGGAGGGAGGGCTTGCGTCGGACGGCAATGGTTGGGGGACGAGTAACG
GAGACGGGAGTAGGGAGGAGGACAAAAGACTGGACAAGAAGCAGGGAGAG
GACTCGGTGGGAGTGGACGACGATGCCGAGTGAGCATCTGGCATGTCCAG
AGAGGATGGATGAGGGAGGTCGTGCTGTTCTAAGGAAGGACGTAAGAGGG
AAGAAAATTGGTAATATGGTGCTGGTGGTGAGATGATGATGGTGACAATA
ATTGGTATTGCTCCATTTTTATGATTAAAATGGCGTGGACTGCGACGTAT
CCGAGACTGATTGTTGTGCGCGATGGATGTTGTGATATTTTGAAGGGTAC
TGACGCCTTTCTGAGGGCCCTTCTCGAATGTATCGGTTTGAAAAGTAACC
AAGAGAGGGTGCGTGGACCAGGCACTTGAAGCGAGAAGGAAAAAAGGGCA
GGGTTGGATGGACGCGGAAGAGCCCCCGAAAGAAAATCCATAGCGAGTAA
AAGCAAGTCGTGTCAACATACAATAAAGCCATGCATGTGCAGAAGGACGA
TAGGGACCAGTACGTCTCCAATCCAGCCCCTGACTTGTAAAGTCAAGCCA
CACTGCCACTCAAAGTCTAAACTGAAGCAACCGTATCAACAGG

protein sequence of rna6245

>rna6245-protein ID=rna6245-protein|Name=rna6245|organism=Nannochloropsis gaditana|type=polypeptide|length=168bp
MMRQIQDRLNNAAQTLKKPQKVIGKQVEERPVWGIDAYTRRMIDYALTTV
TDTSEGPLTESACTHFIEKKLLPAINIQPADKAHDMREALISMQASPLAS
PADKAACTRVMRAIAHLGQVGIPLLPPFLHSLPLSLLKSHLPALPLPFHS
YPGHPLHLARKLALLRPS

mRNA from alignment at CM002468.1:74737..75874-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6245 ID=rna6245|Name=rna6245|organism=Nannochloropsis gaditana|type=mRNA|length=1138bp|location=Sequence derived from alignment at CM002468.1:74737..75874- (Nannochloropsis gaditana)
CTTCAGGTACAACAAGTCTTGAACACGATGATGCGACAGATTCAAGACCG
TCTCAACAACGCCGCTCAAACGCTGAAGAAGCCTCAGAAGGTGCGTGACA
CGTTCCCCGTCCTCCCTCCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTT
CTGTCTTTCCTCGCTCCTGCACATCCTTTGACAAGGTAATTCTTCCTTCC
ATCCCCCTCATATCACCCGACTTGTTCTCCCTCCCTCCCTCCCTCACTCC
CTCAGGTGATCGGAAAGCAGGTGGAGGAGCGTCCGGTCTGGGGCATTGAT
GCCTACACGCGAAGGATGATCGATTACGCCCTCACAACCGTCACGGACAC
GAGCGAAGGCCCCCTGACGGAGAGCGCCTGCACGCACTTCATCGAAAAGG
TCCTCCTCGCCGCCTGCCTTCCTGTCTTTGTCCCGCCCGCCCCCCCTCTC
TCCCTCCCTCCCTACCTCCCTCTTTCCTGGCCTCCTTTGGTGCTTCCTCC
AGTAGCATGCCCGATTCTCGTTCTTCTCCATTTGTGAAAGCACTTGCGGG
CCTTTTTCCCCCGGCTCGTGCGTCAGTTCCTTCCTCATATTTTCTTTTCA
CTCCCTGATCCCCCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTTCCA
CCCTGACCCTGAAACAGAAGCTTCTCCCAGCCATCAATATCCAGCCGGCG
GATAAAGCCCACGACATGCGCGAGGCTCTCATCAGCATGCAGGTAGTAAA
GTTTCCTCGTCCCTCCACCCATCCCCTCCCTCTCTCCCTCCCTCCCTCCC
TCCCAGGCCAGGAGTGTCTACCAACGTGTGGCCGCGCACTCGTTCAGGAC
CTAGTCCCCTCCTCCTTCCCTCCTTCCCTCCTTCCTTCTCTCCCTCCCTC
CCTCCCTCCATGTAGGCCTCTCCTCTCGCATCTCCAGCAGACAAAGCTGC
TTGTACGCGGGTGATGAGGGCCATCGCCCACTTGGGACAGGTAGGTATAC
CCTTACTCCCCCCCTTCCTGCACTCCCTCCCCCTCTCTCTCCTGAAGTCC
CATCTTCCCGCCCTACCTCTGCCGTTTCATTCATATCCAGGGCATCCTTT
GCATTTAGCCAGAAAGCTTGCACTGCTCCGACCTTCCC

Coding sequence (CDS) from alignment at CM002468.1:74737..75874-

>rna6245 ID=rna6245|Name=rna6245|organism=Nannochloropsis gaditana|type=CDS|length=2020bp|location=Sequence derived from alignment at CM002468.1:74737..75874- (Nannochloropsis gaditana)
GCCTCTCCTCTCGCATCTCCAGCAGACAAAGCTGCTTGTACGCGGGTGAT
GAGGGCCATCGCCCACTTGGGACAGGTAGGTATACCCTTACTCCCCCCCT
TCCTGCACTCCCTCCCCCTCTCTCTCCTGAAGTCCCATCTTCCCGCCCTA
CCTCTGCCGTTTCATTCATATCCAGGGCATCCTTTGCATTTAGCCAGAAA
GCTTGCACTGCTCCGACCTTCCCAAGCTTCTCCCAGCCATCAATATCCAG
CCGGCGGATAAAGCCCACGACATGCGCGAGGCTCTCATCAGCATGCAGGT
GATCGGAAAGCAGGTGGAGGAGCGTCCGGTCTGGGGCATTGATGCCTACA
CGCGAAGGATGATCGATTACGCCCTCACAACCGTCACGGACACGAGCGAA
GGCCCCCTGACGGAGAGCGCCTGCACGCACTTCATCGAAAAGATGATGCG
ACAGATTCAAGACCGTCTCAACAACGCCGCTCAAACGCTGAAGAAGCCTC
AGAAGGCCTCTCCTCTCGCATCTCCAGCAGACAAAGCTGCTTGTACGCGG
GTGATGAGGGCCATCGCCCACTTGGGACAGGTAGGTATACCCTTACTCCC
CCCCTTCCTGCACTCCCTCCCCCTCTCTCTCCTGAAGTCCCATCTTCCCG
CCCTACCTCTGCCGTTTCATTCATATCCAGGGCATCCTTTGCATTTAGCC
AGAAAGCTTGCACTGCTCCGACCTTCCCAAGCTTCTCCCAGCCATCAATA
TCCAGCCGGCGGATAAAGCCCACGACATGCGCGAGGCTCTCATCAGCATG
CAGGTGATCGGAAAGCAGGTGGAGGAGCGTCCGGTCTGGGGCATTGATGC
CTACACGCGAAGGATGATCGATTACGCCCTCACAACCGTCACGGACACGA
GCGAAGGCCCCCTGACGGAGAGCGCCTGCACGCACTTCATCGAAAAGATG
ATGCGACAGATTCAAGACCGTCTCAACAACGCCGCTCAAACGCTGAAGAA
GCCTCAGAAGGCCTCTCCTCTCGCATCTCCAGCAGACAAAGCTGCTTGTA
CGCGGGTGATGAGGGCCATCGCCCACTTGGGACAGGTAGGTATACCCTTA
CTCCCCCCCTTCCTGCACTCCCTCCCCCTCTCTCTCCTGAAGTCCCATCT
TCCCGCCCTACCTCTGCCGTTTCATTCATATCCAGGGCATCCTTTGCATT
TAGCCAGAAAGCTTGCACTGCTCCGACCTTCCCAAGCTTCTCCCAGCCAT
CAATATCCAGCCGGCGGATAAAGCCCACGACATGCGCGAGGCTCTCATCA
GCATGCAGGTGATCGGAAAGCAGGTGGAGGAGCGTCCGGTCTGGGGCATT
GATGCCTACACGCGAAGGATGATCGATTACGCCCTCACAACCGTCACGGA
CACGAGCGAAGGCCCCCTGACGGAGAGCGCCTGCACGCACTTCATCGAAA
AGATGATGCGACAGATTCAAGACCGTCTCAACAACGCCGCTCAAACGCTG
AAGAAGCCTCAGAAGGCCTCTCCTCTCGCATCTCCAGCAGACAAAGCTGC
TTGTACGCGGGTGATGAGGGCCATCGCCCACTTGGGACAGGTAGGTATAC
CCTTACTCCCCCCCTTCCTGCACTCCCTCCCCCTCTCTCTCCTGAAGTCC
CATCTTCCCGCCCTACCTCTGCCGTTTCATTCATATCCAGGGCATCCTTT
GCATTTAGCCAGAAAGCTTGCACTGCTCCGACCTTCCCAAGCTTCTCCCA
GCCATCAATATCCAGCCGGCGGATAAAGCCCACGACATGCGCGAGGCTCT
CATCAGCATGCAGGTGATCGGAAAGCAGGTGGAGGAGCGTCCGGTCTGGG
GCATTGATGCCTACACGCGAAGGATGATCGATTACGCCCTCACAACCGTC
ACGGACACGAGCGAAGGCCCCCTGACGGAGAGCGCCTGCACGCACTTCAT
CGAAAAGATGATGCGACAGATTCAAGACCGTCTCAACAACGCCGCTCAAA
CGCTGAAGAAGCCTCAGAAG

Synonyms

Publications