EWM24443.1, cds6230 (CDS) Nannochloropsis gaditana

Overview
NameEWM24443.1
Unique Namecds6230
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:75785..75847 -
Alignment locationCM002468.1:75476..75619 -
Alignment locationCM002468.1:75133..75207 -
Alignment locationCM002468.1:74737..74959 -

Link to JBrowse

Properties
Property NameValue
Start range74737
Start range.
Protein idEWM24443.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101370g1.4140.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:75785..75847 -
CM002468.1supercontigCM002468.1:75476..75619 -
CM002468.1supercontigCM002468.1:75133..75207 -
CM002468.1supercontigCM002468.1:74737..74959 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24443.1 vs. NCBI_GenBank
Match: gi|585105892|gb|EWM24443.1| (hypothetical protein Naga_101370g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 342.043 bits (876), Expect = 4.644e-119
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0
Query:    1 MMRQIQDRLNNAAQTLKKPQKVIGKQVEERPVWGIDAYTRRMIDYALTTVTDTSEGPLTESACTHFIEKKLLPAINIQPADKAHDMREALISMQASPLASPADKAACTRVMRAIAHLGQVGIPLLPPFLHSLPLSLLKSHLPALPLPFHSYPGHPLHLARKLALLRPS 168
            MMRQIQDRLNNAAQTLKKPQKVIGKQVEERPVWGIDAYTRRMIDYALTTVTDTSEGPLTESACTHFIEKKLLPAINIQPADKAHDMREALISMQASPLASPADKAACTRVMRAIAHLGQVGIPLLPPFLHSLPLSLLKSHLPALPLPFHSYPGHPLHLARKLALLRPS
Sbjct:    1 MMRQIQDRLNNAAQTLKKPQKVIGKQVEERPVWGIDAYTRRMIDYALTTVTDTSEGPLTESACTHFIEKKLLPAINIQPADKAHDMREALISMQASPLASPADKAACTRVMRAIAHLGQVGIPLLPPFLHSLPLSLLKSHLPALPLPFHSYPGHPLHLARKLALLRPS 168          
BLAST of EWM24443.1 vs. NCBI_GenBank
Match: gi|219116062|ref|XP_002178826.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409593|gb|EEC49524.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 58.9214 bits (141), Expect = 4.127e-7
Identity = 41/98 (41.84%), Postives = 48/98 (48.98%), Query Frame = 0
Query:    6 QDRLNNAAQTLKKPQKVIGKQVEERPVWGIDAYTRRMIDYALTTVTDTSEGPLTESACTHFIEKKLLPAINIQPADKAHDMREALISMQASPLASPAD 103
            Q R N      KK  +V+     E+PVWG+D YTRR I   L T  D    P T     HFIEK LLPAIN  P D AH +  A   ++  P  S  D
Sbjct:  683 QHRANGVCLDEKKSPEVV-----EQPVWGMDCYTRRNIASCLETDFD----PAT---ALHFIEKWLLPAINACPIDLAHKISNAARILEGLPFESMED 768          
BLAST of EWM24443.1 vs. NCBI_GenBank
Match: gi|1210515711|dbj|GAX25234.1| (hypothetical protein FisN_5Lh316 [Fistulifera solaris])

HSP 1 Score: 58.151 bits (139), Expect = 8.127e-7
Identity = 36/104 (34.62%), Postives = 52/104 (50.00%), Query Frame = 0
Query:    3 RQIQDRLNNAAQTLKKPQKVIGKQVEERPVWGIDAYTRRMIDYALTTVTDTSEGPLTESACTHFIEKKLLPAINIQPADKAHDMREALISMQASPLASPADKAA 106
            R+  + +N+ A   +  +     ++ E+PVWGID YTRR I   L    D    P T      F+EK LLPAIN  P + A D+R A   ++  PL    D+ +
Sbjct:  685 RENHESMNDGATKDESLESEAPPEIVEQPVWGIDCYTRRNITACLQIEFD----PRTS---LQFVEKWLLPAINACPVEYAQDIRNAAKLLEGLPLNDENDECS 781          
The following BLAST results are available for this feature:
BLAST of EWM24443.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585105892|gb|EWM24443.1|4.644e-119100.00hypothetical protein Naga_101370g1, partial [Nanno... [more]
gi|219116062|ref|XP_002178826.1|4.127e-741.84predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210515711|dbj|GAX25234.1|8.127e-734.62hypothetical protein FisN_5Lh316 [Fistulifera sola... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6245rna6245Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications