rna6243, rna6243 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6243
Unique Name	rna6243
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1063
Alignment location	CM002468.1:64551..66375 +

Link to JBrowse

Properties


Property Name	Value
Product	Heat shock protein DnaJ
Orig transcript id	gnl\|cribi\|Naga_100820g3.5793.mrna
Orig protein id	gnl\|cribi\|Naga_100820g3.5793
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:64551..66375 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100820g3	gene6034	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6243	rna6243-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24446.1	cds6228	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:64551..66375+
coding sequence from alignment at CM002468.1:64551..66375+

mRNA sequence

>rna6243 ID=rna6243|Name=rna6243|organism=Nannochloropsis gaditana|type=mRNA|length=1063bp
GTGAGATATCTATCGTGAAGGTGAAGGAGGAGAAGAGAGTAACAATCGGT
GTATCGGGTACTTTTCGAGGGCAGATTGGTTCTCATCGTGGGGAGGATCA
GCAGTCTTATTAGCGAGTATTTTGAAGTCGTTCTGACTGACATCCGAAGG
CATACCAACTTATACAAACACGCTCTCGCACATTGTCATGCTTGCTTCTT
TCTATGACAGGTGCTTGATCGGCATCATATCCACGCAAAAGGCATCCAAT
ATGTCAGAATACGTGCCACCTCCACCCCTCCCATCGACGTCCTCTGCCAC
AAACCTCAGTCGTGCCTCCTCACACGTCTGTCGCGACGTCATACGTTTCC
TCCGCTCTGCTTGCTCGCTCACCACCGAATATGCAGACACGCTCGCGTTA
TATTTAAAGGGCCGAGACCCATCTGACCCCGAACTTTTGACCCTACGGAC
CCTGCAAAACCGCCTCTCCCTCATCCTCCCCCCCCTCCCCCTGCCCTCAG
CCCCTCACGAAACTGGAGACGAGATGGCCCGGCCTCCCATCGATCGCGTC
CTGGGTGACGCCGATCTCCTTCAATTAATTTTCGCCCGGTTCGTAGACGG
TAAATCCGCCGGGCTGACGTCCCGAAAATCGCTTGGGGTCTTGGGCTTGG
TGTGCCGGTCGTGGCAGGCGGTGGCCTGGAGGGACGCGCTGTGGGAAGAA
ATCTGTCGGGAGACGCTCCCTTTGCTGGAGGTGGAGGAGGGAGGCGGAGC
GGACGGCGGCAAACACATGCCGCAATGGTCTCGGCGGGAAATGATGAGGA
AGCACGGGATGGCGCTGGCGGGGCCGGGGAGGCGGCTGCTCTCTGGACAG
TGGGTGGACGAGGTTTTCGTGTGTTTCGAGATATTCGAGAAGGAGAGCGG
GAGGAGGCTGTACGTGGGCTTGGGCGCGATAAACTTGTTTCAGCGAGAGG
ACCCGGAGGACCCGGTGAGGGCGGGGGGGAGGGCGGGGGAGAGGGCGGGA
GGGAGGGAAGGGAAAGAAGGAAGGGGCAATGTCGTGCTTCTCCCTCCCGT
AAAGAGGGTGTGA

protein sequence of rna6243

>rna6243-protein ID=rna6243-protein|Name=rna6243|organism=Nannochloropsis gaditana|type=polypeptide|length=228bp
MSTRSGMLVFGSVVLAVAGNVLVARRYGRRVMSWAVPTENKHSSFVKREM
YKEYWDPAFKRARWESYFSAAAEEERQQAERIYAWMMEEREREALREKLH
RFYHEKVDEQTWQGFSAEDFFGAQFGEEGRKGFRRRAGARRPPPPSTFSQ
QRVEALKTLELSSNPLEELKEETVKEAFRRKALACHPDRVSPEERAKSSQ
EFKKVNAAFTFLMEEVVEGRKREEEDDW

mRNA from alignment at CM002468.1:64551..66375+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6243 ID=rna6243|Name=rna6243|organism=Nannochloropsis gaditana|type=mRNA|length=1825bp|location=Sequence derived from alignment at CM002468.1:64551..66375+ (Nannochloropsis gaditana)
ATGTCCACTCGGAGGCAAGTAAAACCTCGAAGGCGCATGACACCAAGCAT
GCTGTATGCCGTAGCTTTGTTCTGGTCGCGATGTATTTTTTACTTGGCCC
CTTCATCGTGttcttcaccctcctttctcccccctcctggtcATTCTCTC
AGCGGCATGCTGGTGTTCGGGAGCGTCGTGCTCGCAGTGGCTGGCAATGT
CTTGGTGGCCCGCCGATACGGGAGGCGAGTCATGAGCTGGGCGGTACCTA
CGGAGAACAAGCACAGTAGTTTTGTGAAAAGGGAAATGTACAAAGGTAGG
TCTCCTCATCGACGATCCTCCTGTAGGTCAACTCCTAGCTCGTCCGGTCC
ATGTCGGACATTTTCCGCAGAGCGCGGCGCGCagagaatggaagaggaca
agtTTTGCAGACCGTATTGCTTGTATCTGCTGCCTAAATGAGTCGGTTCA
GAGCAGTGTTGCGGCGTCACACGACAGCAATGGGTCTCCTCCTGGCGCTT
CCTATTTCTTCTAttcccattccctcccctccctccctccctccctctgg
ccccCCCCGttgtcccctttctctcgGGCCCTCCTCAGAGTACTGGGACC
CGGCGTTTAAACGGGCGCGATGGGAATCATACTTCTCCGCCgcagccgag
gaggaaaggcaacaGGCAGAAAGGATCTACGCATGGATGTAAGGGTAGGG
GGGAAGTCGACgggagacgggaggaaggaggaatggatggaAAGTCTTTG
TAGTCCCCTGTTTTGGTGCGGATAGGAAGAAGGCAGTTGAAGCAGTTGTA
CCCTGcattcatcctcccctctcccaacTGCTCCGTCCGCCCCTCTTAAT
CTTGTCATGTCCCCCAcatcccttctctctcacctctttcctcgtcctgt
cCCCATCTCTCTGGCTATTTCCCCCggacaggatggaggaaCGAGAACGA
GAGGCGTTGAGGGAGAAGCTTCACCGTTTCTACCACGAAAAAGTGGACGA
GCAGACGTAtgaccctccctcactccctccctttttgtcttcctctttgc
ctccctccctccctatcttcCCTTTTAATTTGAtactcgtcctcttctcc
ttgtcccgttcttttcttcctgacccctctcctcctcttttcccttcctg
cctcatcAGGTGGCAAGGCTTTTCTGCCGAGGATTTCTTCGGGGCTCAAT
TCGGAGAAGAGGGCCGTAAGGGGTTCCGACGGCGAGCAGGGGCACGGGTG
AGGATTGAGggctcgggggagggagtgagaggGGGTCCTGCCCCACTGCC
CTCTCTTGTCAATCATTCTCTCATTCCTGACCTCCCGATTCACATATACT
CGCCATCCAGCGcccacccccaccttccACTTTCTCCCAACAGCGGGTTG
AAGCCCTGAAGACGCTGGAGCTCTCAAGCAACCCTTTGGAggagttgaag
gaggagacggtgaaAGAGGCTTTCCGCAGGAAGGCCCTGGCATGCCATCC
CGAtaggtgcggagggagggcgggtttaagggaagggggggaatgagagc
gggaaaggaaacGACTGCAATTTGGTCGAAGATATTGCGTGGCTTTATGC
ATTTAGATTTTGTTGCTCGCATTTCCGTCCTCAAGTCCTGTCTGTGGATG
TCtgagccccgccccctcccttccctttttccaacTCCATCCCCGATCCG
GTAGAGTATCCCCTGAAGAACGCGCCAAAAGCAGCCAGGAGTTCAAGAAG
GTGAACGCGGCTTTCACTTTCttgatggaagaggtggtagaagggagaaa
gagggaggaggaggatgactgGTAG

Coding sequence (CDS) from alignment at CM002468.1:64551..66375+

>rna6243 ID=rna6243|Name=rna6243|organism=Nannochloropsis gaditana|type=CDS|length=4809bp|location=Sequence derived from alignment at CM002468.1:64551..66375+ (Nannochloropsis gaditana)
ATGTCCACTCGGAGCGGCATGCTGGTGTTCGGGAGCGTCGTGCTCGCAGT
GGCTGGCAATGTCTTGGTGGCCCGCCGATACGGGAGGCGAGTCATGAGCT
GGGCGGTACCTACGGAGAACAAGCACAGTAGTTTTGTGAAAAGGGAAATG
TACAAAGAGTACTGGGACCCGGCGTTTAAACGGGCGCGATGGGAATCATA
CTTCTCCGCCgcagccgaggaggaaaggcaacaGGCAGAAAGGATCTACG
CATGGATgatggaggaaCGAGAACGAGAGGCGTTGAGGGAGAAGCTTCAC
CGTTTCTACCACGAAAAAGTGGACGAGCAGACGTGGCAAGGCTTTTCTGC
CGAGGATTTCTTCGGGGCTCAATTCGGAGAAGAGGGCCGTAAGGGGTTCC
GACGGCGAGCAGGGGCACGGCGcccacccccaccttccACTTTCTCCCAA
CAGCGGGTTGAAGCCCTGAAGACGCTGGAGCTCTCAAGCAACCCTTTGGA
ggagttgaaggaggagacggtgaaAGAGGCTTTCCGCAGGAAGGCCCTGG
CATGCCATCCCGAtagAGTATCCCCTGAAGAACGCGCCAAAAGCAGCCAG
GAGTTCAAGAAGGTGAACGCGGCTTTCACTTTCttgatggaagaggtggt
agaagggagaaagagggaggaggaggatgactgGTAGATGTCCACTCGGA
GCGGCATGCTGGTGTTCGGGAGCGTCGTGCTCGCAGTGGCTGGCAATGTC
TTGGTGGCCCGCCGATACGGGAGGCGAGTCATGAGCTGGGCGGTACCTAC
GGAGAACAAGCACAGTAGTTTTGTGAAAAGGGAAATGTACAAAGAGTACT
GGGACCCGGCGTTTAAACGGGCGCGATGGGAATCATACTTCTCCGCCgca
gccgaggaggaaaggcaacaGGCAGAAAGGATCTACGCATGGATgatgga
ggaaCGAGAACGAGAGGCGTTGAGGGAGAAGCTTCACCGTTTCTACCACG
AAAAAGTGGACGAGCAGACGTGGCAAGGCTTTTCTGCCGAGGATTTCTTC
GGGGCTCAATTCGGAGAAGAGGGCCGTAAGGGGTTCCGACGGCGAGCAGG
GGCACGGCGcccacccccaccttccACTTTCTCCCAACAGCGGGTTGAAG
CCCTGAAGACGCTGGAGCTCTCAAGCAACCCTTTGGAggagttgaaggag
gagacggtgaaAGAGGCTTTCCGCAGGAAGGCCCTGGCATGCCATCCCGA
tagAGTATCCCCTGAAGAACGCGCCAAAAGCAGCCAGGAGTTCAAGAAGG
TGAACGCGGCTTTCACTTTCttgatggaagaggtggtagaagggagaaag
agggaggaggaggatgactgGTAGATGTCCACTCGGAGCGGCATGCTGGT
GTTCGGGAGCGTCGTGCTCGCAGTGGCTGGCAATGTCTTGGTGGCCCGCC
GATACGGGAGGCGAGTCATGAGCTGGGCGGTACCTACGGAGAACAAGCAC
AGTAGTTTTGTGAAAAGGGAAATGTACAAAGAGTACTGGGACCCGGCGTT
TAAACGGGCGCGATGGGAATCATACTTCTCCGCCgcagccgaggaggaaa
ggcaacaGGCAGAAAGGATCTACGCATGGATgatggaggaaCGAGAACGA
GAGGCGTTGAGGGAGAAGCTTCACCGTTTCTACCACGAAAAAGTGGACGA
GCAGACGTGGCAAGGCTTTTCTGCCGAGGATTTCTTCGGGGCTCAATTCG
GAGAAGAGGGCCGTAAGGGGTTCCGACGGCGAGCAGGGGCACGGCGccca
cccccaccttccACTTTCTCCCAACAGCGGGTTGAAGCCCTGAAGACGCT
GGAGCTCTCAAGCAACCCTTTGGAggagttgaaggaggagacggtgaaAG
AGGCTTTCCGCAGGAAGGCCCTGGCATGCCATCCCGAtagAGTATCCCCT
GAAGAACGCGCCAAAAGCAGCCAGGAGTTCAAGAAGGTGAACGCGGCTTT
CACTTTCttgatggaagaggtggtagaagggagaaagagggaggaggagg
atgactgGTAGATGTCCACTCGGAGCGGCATGCTGGTGTTCGGGAGCGTC
GTGCTCGCAGTGGCTGGCAATGTCTTGGTGGCCCGCCGATACGGGAGGCG
AGTCATGAGCTGGGCGGTACCTACGGAGAACAAGCACAGTAGTTTTGTGA
AAAGGGAAATGTACAAAGAGTACTGGGACCCGGCGTTTAAACGGGCGCGA
TGGGAATCATACTTCTCCGCCgcagccgaggaggaaaggcaacaGGCAGA
AAGGATCTACGCATGGATgatggaggaaCGAGAACGAGAGGCGTTGAGGG
AGAAGCTTCACCGTTTCTACCACGAAAAAGTGGACGAGCAGACGTGGCAA
GGCTTTTCTGCCGAGGATTTCTTCGGGGCTCAATTCGGAGAAGAGGGCCG
TAAGGGGTTCCGACGGCGAGCAGGGGCACGGCGcccacccccaccttccA
CTTTCTCCCAACAGCGGGTTGAAGCCCTGAAGACGCTGGAGCTCTCAAGC
AACCCTTTGGAggagttgaaggaggagacggtgaaAGAGGCTTTCCGCAG
GAAGGCCCTGGCATGCCATCCCGAtagAGTATCCCCTGAAGAACGCGCCA
AAAGCAGCCAGGAGTTCAAGAAGGTGAACGCGGCTTTCACTTTCttgatg
gaagaggtggtagaagggagaaagagggaggaggaggatgactgGTAGAT
GTCCACTCGGAGCGGCATGCTGGTGTTCGGGAGCGTCGTGCTCGCAGTGG
CTGGCAATGTCTTGGTGGCCCGCCGATACGGGAGGCGAGTCATGAGCTGG
GCGGTACCTACGGAGAACAAGCACAGTAGTTTTGTGAAAAGGGAAATGTA
CAAAGAGTACTGGGACCCGGCGTTTAAACGGGCGCGATGGGAATCATACT
TCTCCGCCgcagccgaggaggaaaggcaacaGGCAGAAAGGATCTACGCA
TGGATgatggaggaaCGAGAACGAGAGGCGTTGAGGGAGAAGCTTCACCG
TTTCTACCACGAAAAAGTGGACGAGCAGACGTGGCAAGGCTTTTCTGCCG
AGGATTTCTTCGGGGCTCAATTCGGAGAAGAGGGCCGTAAGGGGTTCCGA
CGGCGAGCAGGGGCACGGCGcccacccccaccttccACTTTCTCCCAACA
GCGGGTTGAAGCCCTGAAGACGCTGGAGCTCTCAAGCAACCCTTTGGAgg
agttgaaggaggagacggtgaaAGAGGCTTTCCGCAGGAAGGCCCTGGCA
TGCCATCCCGAtagAGTATCCCCTGAAGAACGCGCCAAAAGCAGCCAGGA
GTTCAAGAAGGTGAACGCGGCTTTCACTTTCttgatggaagaggtggtag
aagggagaaagagggaggaggaggatgactgGTAGATGTCCACTCGGAGC
GGCATGCTGGTGTTCGGGAGCGTCGTGCTCGCAGTGGCTGGCAATGTCTT
GGTGGCCCGCCGATACGGGAGGCGAGTCATGAGCTGGGCGGTACCTACGG
AGAACAAGCACAGTAGTTTTGTGAAAAGGGAAATGTACAAAGAGTACTGG
GACCCGGCGTTTAAACGGGCGCGATGGGAATCATACTTCTCCGCCgcagc
cgaggaggaaaggcaacaGGCAGAAAGGATCTACGCATGGATgatggagg
aaCGAGAACGAGAGGCGTTGAGGGAGAAGCTTCACCGTTTCTACCACGAA
AAAGTGGACGAGCAGACGTGGCAAGGCTTTTCTGCCGAGGATTTCTTCGG
GGCTCAATTCGGAGAAGAGGGCCGTAAGGGGTTCCGACGGCGAGCAGGGG
CACGGCGcccacccccaccttccACTTTCTCCCAACAGCGGGTTGAAGCC
CTGAAGACGCTGGAGCTCTCAAGCAACCCTTTGGAggagttgaaggagga
gacggtgaaAGAGGCTTTCCGCAGGAAGGCCCTGGCATGCCATCCCGAta
gAGTATCCCCTGAAGAACGCGCCAAAAGCAGCCAGGAGTTCAAGAAGGTG
AACGCGGCTTTCACTTTCttgatggaagaggtggtagaagggagaaagag
ggaggaggaggatgactgGTAGATGTCCACTCGGAGCGGCATGCTGGTGT
TCGGGAGCGTCGTGCTCGCAGTGGCTGGCAATGTCTTGGTGGCCCGCCGA
TACGGGAGGCGAGTCATGAGCTGGGCGGTACCTACGGAGAACAAGCACAG
TAGTTTTGTGAAAAGGGAAATGTACAAAGAGTACTGGGACCCGGCGTTTA
AACGGGCGCGATGGGAATCATACTTCTCCGCCgcagccgaggaggaaagg
caacaGGCAGAAAGGATCTACGCATGGATgatggaggaaCGAGAACGAGA
GGCGTTGAGGGAGAAGCTTCACCGTTTCTACCACGAAAAAGTGGACGAGC
AGACGTGGCAAGGCTTTTCTGCCGAGGATTTCTTCGGGGCTCAATTCGGA
GAAGAGGGCCGTAAGGGGTTCCGACGGCGAGCAGGGGCACGGCGcccacc
cccaccttccACTTTCTCCCAACAGCGGGTTGAAGCCCTGAAGACGCTGG
AGCTCTCAAGCAACCCTTTGGAggagttgaaggaggagacggtgaaAGAG
GCTTTCCGCAGGAAGGCCCTGGCATGCCATCCCGAtagAGTATCCCCTGA
AGAACGCGCCAAAAGCAGCCAGGAGTTCAAGAAGGTGAACGCGGCTTTCA
CTTTCttgatggaagaggtggtagaagggagaaagagggaggaggaggat
gactgGTAG

Synonyms

Publications