EWM24446.1, cds6228 (CDS) Nannochloropsis gaditana

Overview
NameEWM24446.1
Unique Namecds6228
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:64551..64564 +
Alignment locationCM002468.1:64703..64845 +
Alignment locationCM002468.1:65139..65238 +
Alignment locationCM002468.1:65482..65556 +
Alignment locationCM002468.1:65710..65797 +
Alignment locationCM002468.1:65911..66056 +
Alignment locationCM002468.1:66255..66375 +

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Properties
Property NameValue
Protein idEWM24446.1
ProductHeat shock protein DnaJ
Orig transcript idgnl|cribi|Naga_100820g3.5793.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:64551..64564 +
CM002468.1supercontigCM002468.1:64703..64845 +
CM002468.1supercontigCM002468.1:65139..65238 +
CM002468.1supercontigCM002468.1:65482..65556 +
CM002468.1supercontigCM002468.1:65710..65797 +
CM002468.1supercontigCM002468.1:65911..66056 +
CM002468.1supercontigCM002468.1:66255..66375 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR001623DnaJ_domain
Homology
[Close]
BLAST of EWM24446.1 vs. NCBI_GenBank
Match: gi|585105898|gb|EWM24446.1| (Heat shock protein DnaJ [Nannochloropsis gaditana])

HSP 1 Score: 460.685 bits (1184), Expect = 4.949e-164
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0 
Query:    1 MSTRSGMLVFGSVVLAVAGNVLVARRYGRRVMSWAVPTENKHSSFVKREMYKEYWDPAFKRARWESYFSAAAEEERQQAERIYAWMMEEREREALREKLHRFYHEKVDEQTWQGFSAEDFFGAQFGEEGRKGFRRRAGARRPPPPSTFSQQRVEALKTLELSSNPLEELKEETVKEAFRRKALACHPDRVSPEERAKSSQEFKKVNAAFTFLMEEVVEGRKREEEDDW 228
            MSTRSGMLVFGSVVLAVAGNVLVARRYGRRVMSWAVPTENKHSSFVKREMYKEYWDPAFKRARWESYFSAAAEEERQQAERIYAWMMEEREREALREKLHRFYHEKVDEQTWQGFSAEDFFGAQFGEEGRKGFRRRAGARRPPPPSTFSQQRVEALKTLELSSNPLEELKEETVKEAFRRKALACHPDRVSPEERAKSSQEFKKVNAAFTFLMEEVVEGRKREEEDDW
Sbjct:    1 MSTRSGMLVFGSVVLAVAGNVLVARRYGRRVMSWAVPTENKHSSFVKREMYKEYWDPAFKRARWESYFSAAAEEERQQAERIYAWMMEEREREALREKLHRFYHEKVDEQTWQGFSAEDFFGAQFGEEGRKGFRRRAGARRPPPPSTFSQQRVEALKTLELSSNPLEELKEETVKEAFRRKALACHPDRVSPEERAKSSQEFKKVNAAFTFLMEEVVEGRKREEEDDW 228
[Close]
BLAST of EWM24446.1 vs. NCBI_GenBank
Match: gi|553189935|ref|XP_005855104.1| (hypothetical protein NGA_0399500 [Nannochloropsis gaditana CCMP526] >gi|422293960|gb|EKU21260.1| hypothetical protein NGA_0399500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 193.356 bits (490), Expect = 3.956e-60
Identity = 106/142 (74.65%), Postives = 106/142 (74.65%), Query Frame = 0 
Query:   32 MSWAVPTENKHSSFVKREMYKEYWDPAFKRARWESYFSAAAEEERQQAERIYAWMMEEREREALREKLHRFYHEKVDEQTWQGFSAEDFFGAQFGEEGRKGFRRRAGARRPPPPSTFSQQRVEALKTLELSSNPLEELKEET 173
            MSWAVPTENKHSSFVKREMYKEYWDPAFKRARWESYFSAAAEEERQQAERIYAWM                         WQGFSAEDFFGAQFGEEGRKGFRRRAGAR           RVEALKTLELSSNPLEELKEET
Sbjct:    1 MSWAVPTENKHSSFVKREMYKEYWDPAFKRARWESYFSAAAEEERQQAERIYAWM-------------------------WQGFSAEDFFGAQFGEEGRKGFRRRAGAR-----------RVEALKTLELSSNPLEELKEET 106
The following BLAST results are available for this feature:
BLAST of EWM24446.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105898|gb|EWM24446.1|4.949e-164100.00Heat shock protein DnaJ [Nannochloropsis gaditana][more]
gi|553189935|ref|XP_005855104.1|3.956e-6074.65hypothetical protein NGA_0399500 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6243rna6243Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications