rna6241, rna6241 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6241
Unique Name	rna6241
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	981
Alignment location	CM002468.1:59823..61295 +

Link to JBrowse

Properties


Property Name	Value
Product	mitochondrion protein
Orig transcript id	gnl\|cribi\|Naga_101792g1.8826.mrna
Orig protein id	gnl\|cribi\|Naga_101792g1.8826
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:59823..61295 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101792g1	gene6031	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6241	rna6241-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24447.1	cds6226	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:59823..61295+
coding sequence from alignment at CM002468.1:59823..61295+

mRNA sequence

>rna6241 ID=rna6241|Name=rna6241|organism=Nannochloropsis gaditana|type=mRNA|length=981bp
TCAGTTCTCCCCACGTACGTCCTCGATTGCATCGACGATGTGCAGACCAA
GGCAGAGCTTTTGATGTACGCACAAGATCAAGATTTGCGCGTTATTTCCG
CCCTGGGAGCTGGCCTGAAAGCCGACCCCACTCGTCTCTGCATCGGGGAG
CTTGACAACACCAAAAACGAGCCTCTGGCCATCAAGCTCAGATACCTCCT
TCGGAAGCAGGGCCGTGCCTGCACAGGCATCACCACCGTATACTCCCACG
AGAAACCGCGCGGATCCCTCCTCCCTCTCACCGACGAGCAAGAAGCAGCC
CCTTCCGATTTCGGAATCCTGGAACACATGCGTCTGCGTGTCCTGCCTGT
CCTTGGCACGATGCCTGCCCTCTTCGGTCAGGCTATGGCCGCCTTCGTCT
TGTGCGAGCTCGCCGGACAATCCCTGCAGCCTGTGGCTGTGGTAATCCCC
TTCCCCATTCCCTTCCTCCTTGGTCGTCTCCAGATGGCTCGCTTGCTTGG
GAAGATGCACACCCTTCCTTCAGGCTTTTCCCTCCTTCTCCTTCCCTGCC
TCATTTTTCTCCTCACCCTGCGTACCCCTCCTTCTACTCCCAAGGCACTC
AAACTCCTCCCTCCCCCCGCCCTCCCTCCCTCCCTCCCTGCCCCTCAGGA
AGGACTTTCTCGCAACGTGAAGCACCGTCTCCTGCAGCATCTACGGAACC
GCGAGCGCGCGACCTTCCAGAACCGCGACACGTGAGGAAGGAGGGAGGAA
GGGAGGGAGGGCGGGAAGGAGGGAGAGCCCTGTGGTCATCGATGCAGGTC
GTCTTCCTACGCCCACCTCTCTTCTTCTCTATCCAACCCTTGGTCCACGT
GCCAGGAACGACATCTCCATGCAGGACATCGAGGAAGTGTGTCAAGATAT
ATGGCGCTGTCGCTGTGTGCTGACAGGGGCCCGTTTAGGAACCGGGAAGG
TCTTTGCGCTCACACGGTACGCCTTCCCTCC

protein sequence of rna6241

>rna6241-protein ID=rna6241-protein|Name=rna6241|organism=Nannochloropsis gaditana|type=polypeptide|length=196bp
MYAQDQDLRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQG
RACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTM
PALFGQAMAAFVLCELAGQSLQPVAVEGLSRNVKHRLLQHLRNRERATFQ
NRDTNDISMQDIEEVCQDIWRCRCVLTGARLGTGKVFALTRYAFPP

mRNA from alignment at CM002468.1:59823..61295+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6241 ID=rna6241|Name=rna6241|organism=Nannochloropsis gaditana|type=mRNA|length=1473bp|location=Sequence derived from alignment at CM002468.1:59823..61295+ (Nannochloropsis gaditana)
TCAGTTCTCCCCACGTACGTCCTCGATTGCATCGACGATGTGCAGACCAA
GGCAGAGCTTTTGATGTACGCACAAGATCAAGATTTGCGCGTTATTTCCG
CCCTGGGAGCTGGCCTGAAAGCCGACCCCACTCGTCTCTGCATCGGGTGC
GTGTCCCCGTACGCTCGAACAGATCGAAAAAGAAGCACGGCCTTTCCTTT
GCCCTCGATCCATTtctgttcctccctctttttgacttcttccttgtcct
cgatcAGGGAGCTTGACAACACCAAAAACGAGCCTCTGGCCATCAAGCTC
AGATACCTCCTTCGGAAGCAGGGCCGTGCCTGCACAGGtaccttctctcc
cttgccctctttctctctctaaACCCACCCTAAGTCTCACCTTAACCTTC
AGTCATTCCTCAGTCGTGGCCTATCACCTTCTATGCAACTCGCGCCATCC
TgccccctcattccctctttccctccctcctgtcctcagGCATCACCACC
GTATACTCCCACGAGAAACCGCGCggatccctcctccctctcaccgaCGA
GCAAGAAGCAGCCCCTTCCGATTTCGGAATCCTGGAACACATGCGTCTGC
GTGTCCTGCCTGTCCTTGGTATCtgcctcattcctccctccctccctccc
tccctccctccctccctccctccctccctccttctctctcgcccATTTCA
TCTCCCTatcccgacctcctccctctgttcaCCCTTATTCTTCGGTTCCA
GCATGTGCCATGCTCCGTTCAAGTCCTCTTAccttccctcgttccctccc
tatTTCCCCCTCGTgcgctccttccctgctcccctccctctctgcagGCA
CGATGCCTGCCCTCTTCGGTCAGGCTATGGCCGCCTTCGTCTTGTGCGAG
CTCGCCGGACAATCCCTGCAGCCTGTGGCTGTGGTAAtccccttccccat
tcccttcctccttggtcgTCTCCAGATGGCTCGCTTGCTTGGGAAGATGC
ACACCCTTCCTTCaggcttttccctccttctccttccctgcctcattttt
ctcctcaccctgcgtacccctccttctactcCCAAGGCACTCaaactcct
ccctccccccgccctccctccctccctccctgcccctcagGAAGGACTTT
CTCGCAACGTGAAGCACCGTCTCCTGCAGCATCTACGGAACCGCGAGCGC
GCGACCTTCCAGAACCGCGAcacgtgaggaaggagggaggaagggaggga
gggcgggaaggagggagagccctGTGGTCATCGATGCAGGTCGTCTTCCT
ACGCccacctctcttcttctctatCCAACCCTTGGTCCACGTGCCAGGAA
CGACATCTCCATGCAGGACATCGAGGAAGTGTGTCAAGATATATGGCGCT
GTCGCTGTGTGCTGACAGGGGCCCGTTTAGGAACCGGGAAGGTCTTTGCG
CTCACACGGtacgccttccctcc

Coding sequence (CDS) from alignment at CM002468.1:59823..61295+

>rna6241 ID=rna6241|Name=rna6241|organism=Nannochloropsis gaditana|type=CDS|length=3522bp|location=Sequence derived from alignment at CM002468.1:59823..61295+ (Nannochloropsis gaditana)
ATGTACGCACAAGATCAAGATTTGCGCGTTATTTCCGCCCTGGGAGCTGG
CCTGAAAGCCGACCCCACTCGTCTCTGCATCGGGGAGCTTGACAACACCA
AAAACGAGCCTCTGGCCATCAAGCTCAGATACCTCCTTCGGAAGCAGGGC
CGTGCCTGCACAGGCATCACCACCGTATACTCCCACGAGAAACCGCGCgg
atccctcctccctctcaccgaCGAGCAAGAAGCAGCCCCTTCCGATTTCG
GAATCCTGGAACACATGCGTCTGCGTGTCCTGCCTGTCCTTGGCACGATG
CCTGCCCTCTTCGGTCAGGCTATGGCCGCCTTCGTCTTGTGCGAGCTCGC
CGGACAATCCCTGCAGCCTGTGGCTGTGGAAGGACTTTCTCGCAACGTGA
AGCACCGTCTCCTGCAGCATCTACGGAACCGCGAGCGCGCGACCTTCCAG
AACCGCGAcacGAACGACATCTCCATGCAGGACATCGAGGAAGTGTGTCA
AGATATATGGCGCTGTCGCTGTGTGCTGACAGGGGCCCGTTTAGGAACCG
GGAAGGTCTTTGCGCTCACACGGtacgccttccctccATGTACGCACAAG
ATCAAGATTTGCGCGTTATTTCCGCCCTGGGAGCTGGCCTGAAAGCCGAC
CCCACTCGTCTCTGCATCGGGGAGCTTGACAACACCAAAAACGAGCCTCT
GGCCATCAAGCTCAGATACCTCCTTCGGAAGCAGGGCCGTGCCTGCACAG
GCATCACCACCGTATACTCCCACGAGAAACCGCGCggatccctcctccct
ctcaccgaCGAGCAAGAAGCAGCCCCTTCCGATTTCGGAATCCTGGAACA
CATGCGTCTGCGTGTCCTGCCTGTCCTTGGCACGATGCCTGCCCTCTTCG
GTCAGGCTATGGCCGCCTTCGTCTTGTGCGAGCTCGCCGGACAATCCCTG
CAGCCTGTGGCTGTGGAAGGACTTTCTCGCAACGTGAAGCACCGTCTCCT
GCAGCATCTACGGAACCGCGAGCGCGCGACCTTCCAGAACCGCGAcacGA
ACGACATCTCCATGCAGGACATCGAGGAAGTGTGTCAAGATATATGGCGC
TGTCGCTGTGTGCTGACAGGGGCCCGTTTAGGAACCGGGAAGGTCTTTGC
GCTCACACGGtacgccttccctccATGTACGCACAAGATCAAGATTTGCG
CGTTATTTCCGCCCTGGGAGCTGGCCTGAAAGCCGACCCCACTCGTCTCT
GCATCGGGGAGCTTGACAACACCAAAAACGAGCCTCTGGCCATCAAGCTC
AGATACCTCCTTCGGAAGCAGGGCCGTGCCTGCACAGGCATCACCACCGT
ATACTCCCACGAGAAACCGCGCggatccctcctccctctcaccgaCGAGC
AAGAAGCAGCCCCTTCCGATTTCGGAATCCTGGAACACATGCGTCTGCGT
GTCCTGCCTGTCCTTGGCACGATGCCTGCCCTCTTCGGTCAGGCTATGGC
CGCCTTCGTCTTGTGCGAGCTCGCCGGACAATCCCTGCAGCCTGTGGCTG
TGGAAGGACTTTCTCGCAACGTGAAGCACCGTCTCCTGCAGCATCTACGG
AACCGCGAGCGCGCGACCTTCCAGAACCGCGAcacGAACGACATCTCCAT
GCAGGACATCGAGGAAGTGTGTCAAGATATATGGCGCTGTCGCTGTGTGC
TGACAGGGGCCCGTTTAGGAACCGGGAAGGTCTTTGCGCTCACACGGtac
gccttccctccATGTACGCACAAGATCAAGATTTGCGCGTTATTTCCGCC
CTGGGAGCTGGCCTGAAAGCCGACCCCACTCGTCTCTGCATCGGGGAGCT
TGACAACACCAAAAACGAGCCTCTGGCCATCAAGCTCAGATACCTCCTTC
GGAAGCAGGGCCGTGCCTGCACAGGCATCACCACCGTATACTCCCACGAG
AAACCGCGCggatccctcctccctctcaccgaCGAGCAAGAAGCAGCCCC
TTCCGATTTCGGAATCCTGGAACACATGCGTCTGCGTGTCCTGCCTGTCC
TTGGCACGATGCCTGCCCTCTTCGGTCAGGCTATGGCCGCCTTCGTCTTG
TGCGAGCTCGCCGGACAATCCCTGCAGCCTGTGGCTGTGGAAGGACTTTC
TCGCAACGTGAAGCACCGTCTCCTGCAGCATCTACGGAACCGCGAGCGCG
CGACCTTCCAGAACCGCGAcacGAACGACATCTCCATGCAGGACATCGAG
GAAGTGTGTCAAGATATATGGCGCTGTCGCTGTGTGCTGACAGGGGCCCG
TTTAGGAACCGGGAAGGTCTTTGCGCTCACACGGtacgccttccctccAT
GTACGCACAAGATCAAGATTTGCGCGTTATTTCCGCCCTGGGAGCTGGCC
TGAAAGCCGACCCCACTCGTCTCTGCATCGGGGAGCTTGACAACACCAAA
AACGAGCCTCTGGCCATCAAGCTCAGATACCTCCTTCGGAAGCAGGGCCG
TGCCTGCACAGGCATCACCACCGTATACTCCCACGAGAAACCGCGCggat
ccctcctccctctcaccgaCGAGCAAGAAGCAGCCCCTTCCGATTTCGGA
ATCCTGGAACACATGCGTCTGCGTGTCCTGCCTGTCCTTGGCACGATGCC
TGCCCTCTTCGGTCAGGCTATGGCCGCCTTCGTCTTGTGCGAGCTCGCCG
GACAATCCCTGCAGCCTGTGGCTGTGGAAGGACTTTCTCGCAACGTGAAG
CACCGTCTCCTGCAGCATCTACGGAACCGCGAGCGCGCGACCTTCCAGAA
CCGCGAcacGAACGACATCTCCATGCAGGACATCGAGGAAGTGTGTCAAG
ATATATGGCGCTGTCGCTGTGTGCTGACAGGGGCCCGTTTAGGAACCGGG
AAGGTCTTTGCGCTCACACGGtacgccttccctccATGTACGCACAAGAT
CAAGATTTGCGCGTTATTTCCGCCCTGGGAGCTGGCCTGAAAGCCGACCC
CACTCGTCTCTGCATCGGGGAGCTTGACAACACCAAAAACGAGCCTCTGG
CCATCAAGCTCAGATACCTCCTTCGGAAGCAGGGCCGTGCCTGCACAGGC
ATCACCACCGTATACTCCCACGAGAAACCGCGCggatccctcctccctct
caccgaCGAGCAAGAAGCAGCCCCTTCCGATTTCGGAATCCTGGAACACA
TGCGTCTGCGTGTCCTGCCTGTCCTTGGCACGATGCCTGCCCTCTTCGGT
CAGGCTATGGCCGCCTTCGTCTTGTGCGAGCTCGCCGGACAATCCCTGCA
GCCTGTGGCTGTGGAAGGACTTTCTCGCAACGTGAAGCACCGTCTCCTGC
AGCATCTACGGAACCGCGAGCGCGCGACCTTCCAGAACCGCGAcacGAAC
GACATCTCCATGCAGGACATCGAGGAAGTGTGTCAAGATATATGGCGCTG
TCGCTGTGTGCTGACAGGGGCCCGTTTAGGAACCGGGAAGGTCTTTGCGC
TCACACGGtacgccttccctcc

Synonyms

Publications