EWM24447.1, cds6226 (CDS) Nannochloropsis gaditana

Overview
NameEWM24447.1
Unique Namecds6226
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:59886..59968 +
Alignment locationCM002468.1:60080..60159 +
Alignment locationCM002468.1:60312..60440 +
Alignment locationCM002468.1:60670..60755 +
Alignment locationCM002468.1:60963..61045 +
Alignment locationCM002468.1:61170..61295 +

Link to JBrowse

Properties
Property NameValue
End range.
End range61295
Protein idEWM24447.1
Productmitochondrion protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101792g1.8826.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:59886..59968 +
CM002468.1supercontigCM002468.1:60080..60159 +
CM002468.1supercontigCM002468.1:60312..60440 +
CM002468.1supercontigCM002468.1:60670..60755 +
CM002468.1supercontigCM002468.1:60963..61045 +
CM002468.1supercontigCM002468.1:61170..61295 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR009036Molybdenum_cofac_synth_MoeB
Homology
[Close]
BLAST of EWM24447.1 vs. NCBI_GenBank
Match: gi|585105901|gb|EWM24447.1| (mitochondrion protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 405.216 bits (1040), Expect = 3.634e-143
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0 
Query:    1 MYAQDQDLRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAVEGLSRNVKHRLLQHLRNRERATFQNRDTNDISMQDIEEVCQDIWRCRCVLTGARLGTGKVFALTRYAFPP 196
            MYAQDQDLRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAVEGLSRNVKHRLLQHLRNRERATFQNRDTNDISMQDIEEVCQDIWRCRCVLTGARLGTGKVFALTRYAFPP
Sbjct:    1 MYAQDQDLRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAVEGLSRNVKHRLLQHLRNRERATFQNRDTNDISMQDIEEVCQDIWRCRCVLTGARLGTGKVFALTRYAFPP 196
[Close]
BLAST of EWM24447.1 vs. NCBI_GenBank
Match: gi|585105902|gb|EWM24448.1| (mitochondrion protein [Nannochloropsis gaditana])

HSP 1 Score: 257.684 bits (657), Expect = 2.659e-84
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 
Query:    1 MYAQDQDLRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAV 126
            MYAQDQDLRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAV
Sbjct:    1 MYAQDQDLRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAV 126

HSP 2 Score: 62.003 bits (149), Expect = 2.281e-8
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 
Query:  127 EGLSRNVKHRLLQHLRNRERATFQNRDT 154
            EGLSRNVKHRLLQHLRNRERATFQNRDT
Sbjct:  196 EGLSRNVKHRLLQHLRNRERATFQNRDT 223
[Close]
BLAST of EWM24447.1 vs. NCBI_GenBank
Match: gi|695374400|ref|XP_009515287.1| (hypothetical protein PHYSODRAFT_468262 [Phytophthora sojae] >gi|348688198|gb|EGZ28012.1| hypothetical protein PHYSODRAFT_468262 [Phytophthora sojae])

HSP 1 Score: 185.652 bits (470), Expect = 1.725e-53
Identity = 92/187 (49.20%), Postives = 127/187 (67.91%), Query Frame = 0 
Query:    6 QDLRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAVEGLSRNVKHRLLQHLRNRERATFQNRDTNDISMQDIEEVCQDIWRCRCVLTGARLGTGKVFALTRY 192
            ++L+VI+A GAG KADPTRL IG L +   +PLA K+RY L+K+G + + ITT++S EK    LLPL  EQ   P +FG +E+ R+RV+PVLGTMPALFGQ+MAA+VLC+LAG+ + P AV  LSR+ +++L Q L+ RE   F      ++   +IE V Q+IWR R  ++GAR G      L R+
Sbjct:  196 KNLKVITATGAGAKADPTRLQIGSLKDAVRDPLATKIRYFLKKKGISSSEITTIFSSEKSVCKLLPLGAEQAQNPEEFGNVENFRIRVIPVLGTMPALFGQSMAAYVLCDLAGKKINPEAVARLSRDQRNKLYQKLQQREHVLFHEGHKIELEKDEIEFVYQEIWRGRSSVSGARNGGHDRLYLARW 382
[Close]
BLAST of EWM24447.1 vs. NCBI_GenBank
Match: gi|567954702|gb|ETK80335.1| (hypothetical protein L915_13965 [Phytophthora parasitica])

HSP 1 Score: 184.111 bits (466), Expect = 6.199e-53
Identity = 92/185 (49.73%), Postives = 124/185 (67.03%), Query Frame = 0 
Query:    8 LRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAVEGLSRNVKHRLLQHLRNRERATFQNRDTNDISMQDIEEVCQDIWRCRCVLTGARLGTGKVFALTRY 192
            L+VI+A GAG KADPTRL IG L +   +PLA K+RY L+K+G + + ITT++S EK    LLPL  EQ   P  FG +E+ R+RV+PVLGTMPALFGQ+MAA+VLC+LAG+ + P AV  LSR+ +++L Q L+ RE   F      ++   +IE V Q+IWR R  ++GAR G      L R+
Sbjct:  195 LKVITATGAGAKADPTRLQIGSLKDAVRDPLATKIRYFLKKKGISSSEITTIFSSEKSVCKLLPLDAEQAQNPEQFGNVENFRIRVIPVLGTMPALFGQSMAAYVLCDLAGKKINPEAVARLSRDQRNKLYQKLQQREHVLFHEGHKIELEKDEIEFVYQEIWRGRSSVSGARNGGHDRLYLARW 379
[Close]
BLAST of EWM24447.1 vs. NCBI_GenBank
Match: gi|970653171|gb|KUF91692.1| (Vacuolar-sorting protein SNF7 [Phytophthora nicotianae])

HSP 1 Score: 183.726 bits (465), Expect = 6.301e-53
Identity = 92/185 (49.73%), Postives = 124/185 (67.03%), Query Frame = 0 
Query:    8 LRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAVEGLSRNVKHRLLQHLRNRERATFQNRDTNDISMQDIEEVCQDIWRCRCVLTGARLGTGKVFALTRY 192
            L+VI+A GAG KADPTRL IG L +   +PLA K+RY L+K+G + + ITT++S EK    LLPL  EQ   P  FG +E+ R+RV+PVLGTMPALFGQ+MAA+VLC+LAG+ + P AV  LSR+ +++L Q L+ RE   F      ++   +IE V Q+IWR R  ++GAR G      L R+
Sbjct:  182 LKVITATGAGAKADPTRLQIGSLKDAVRDPLATKIRYFLKKKGISSSEITTIFSSEKSVCKLLPLDAEQAQNPEQFGNVENFRIRVIPVLGTMPALFGQSMAAYVLCDLAGKKINPEAVARLSRDQRNKLYQKLQQREHVLFHEGHKIELEKDEIEFVYQEIWRGRSSVSGARNGGHDRLYLARW 366
[Close]
BLAST of EWM24447.1 vs. NCBI_GenBank
Match: gi|675202063|ref|XP_008909916.1| (hypothetical protein PPTG_14396 [Phytophthora parasitica INRA-310] >gi|568089682|gb|ETN04522.1| hypothetical protein PPTG_14396 [Phytophthora parasitica INRA-310] >gi|570321010|gb|ETO68958.1| hypothetical protein F444_14332 [Phytophthora parasitica P1976])

HSP 1 Score: 184.111 bits (466), Expect = 6.681e-53
Identity = 92/185 (49.73%), Postives = 124/185 (67.03%), Query Frame = 0 
Query:    8 LRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAVEGLSRNVKHRLLQHLRNRERATFQNRDTNDISMQDIEEVCQDIWRCRCVLTGARLGTGKVFALTRY 192
            L+VI+A GAG KADPTRL IG L +   +PLA K+RY L+K+G + + ITT++S EK    LLPL  EQ   P  FG +E+ R+RV+PVLGTMPALFGQ+MAA+VLC+LAG+ + P AV  LSR+ +++L Q L+ RE   F      ++   +IE V Q+IWR R  ++GAR G      L R+
Sbjct:  195 LKVITATGAGAKADPTRLQIGSLKDAVRDPLATKIRYFLKKKGISSSEITTIFSSEKSVCKLLPLDAEQAQNPEQFGNVENFRIRVIPVLGTMPALFGQSMAAYVLCDLAGKKINPEAVARLSRDQRNKLYQKLQQREHVLFHEGHKIELEKDEIEFVYQEIWRGRSSVSGARNGGHDRLYLARW 379
[Close]
BLAST of EWM24447.1 vs. NCBI_GenBank
Match: gi|568042887|gb|ETM40202.1| (hypothetical protein L914_13789 [Phytophthora parasitica])

HSP 1 Score: 184.111 bits (466), Expect = 6.681e-53
Identity = 92/185 (49.73%), Postives = 124/185 (67.03%), Query Frame = 0 
Query:    8 LRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAVEGLSRNVKHRLLQHLRNRERATFQNRDTNDISMQDIEEVCQDIWRCRCVLTGARLGTGKVFALTRY 192
            L+VI+A GAG KADPTRL IG L +   +PLA K+RY L+K+G + + ITT++S EK    LLPL  EQ   P  FG +E+ R+RV+PVLGTMPALFGQ+MAA+VLC+LAG+ + P AV  LSR+ +++L Q L+ RE   F      ++   +IE V Q+IWR R  ++GAR G      L R+
Sbjct:  195 LKVITATGAGAKADPTRLQIGSLKDAVRDPLATKIRYFLKKKGISSSEITTIFSSEKSVCKLLPLDAEQAQNPEQFGNVENFRIRVIPVLGTMPALFGQSMAAYVLCDLAGKKINPEAVARLSRDQRNKLYQKLQQREHVLFHEGHKIELEKDEIEFVYQEIWRGRSSVSGARNGGHDRLYLARW 379
[Close]
BLAST of EWM24447.1 vs. NCBI_GenBank
Match: gi|970663934|gb|KUG00981.1| (hypothetical protein AM587_10006104 [Phytophthora nicotianae])

HSP 1 Score: 184.111 bits (466), Expect = 6.752e-53
Identity = 92/185 (49.73%), Postives = 124/185 (67.03%), Query Frame = 0 
Query:    8 LRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAVEGLSRNVKHRLLQHLRNRERATFQNRDTNDISMQDIEEVCQDIWRCRCVLTGARLGTGKVFALTRY 192
            L+VI+A GAG KADPTRL IG L +   +PLA K+RY L+K+G + + ITT++S EK    LLPL  EQ   P  FG +E+ R+RV+PVLGTMPALFGQ+MAA+VLC+LAG+ + P AV  LSR+ +++L Q L+ RE   F      ++   +IE V Q+IWR R  ++GAR G      L R+
Sbjct:  195 LKVITATGAGAKADPTRLQIGSLKDAVRDPLATKIRYFLKKKGISSSEITTIFSSEKSVCKLLPLDAEQAQNPEQFGNVENFRIRVIPVLGTMPALFGQSMAAYVLCDLAGKKINPEAVARLSRDQRNKLYQKLQQREHVLFHEGHKIELEKDEIEFVYQEIWRGRSSVSGARNGGHDRLYLARW 379
[Close]
BLAST of EWM24447.1 vs. NCBI_GenBank
Match: gi|567983357|gb|ETL33752.1| (hypothetical protein L916_13866 [Phytophthora parasitica])

HSP 1 Score: 184.111 bits (466), Expect = 6.752e-53
Identity = 92/185 (49.73%), Postives = 124/185 (67.03%), Query Frame = 0 
Query:    8 LRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAVEGLSRNVKHRLLQHLRNRERATFQNRDTNDISMQDIEEVCQDIWRCRCVLTGARLGTGKVFALTRY 192
            L+VI+A GAG KADPTRL IG L +   +PLA K+RY L+K+G + + ITT++S EK    LLPL  EQ   P  FG +E+ R+RV+PVLGTMPALFGQ+MAA+VLC+LAG+ + P AV  LSR+ +++L Q L+ RE   F      ++   +IE V Q+IWR R  ++GAR G      L R+
Sbjct:  195 LKVITATGAGAKADPTRLQIGSLKDAVRDPLATKIRYFLKKKGISSSEITTIFSSEKSVCKLLPLDAEQAQNPEQFGNVENFRIRVIPVLGTMPALFGQSMAAYVLCDLAGKKINPEAVARLSRDQRNKLYQKLQQREHVLFHEGHKIELEKDEIEFVYQEIWRGRSSVSGARNGGHDRLYLARW 379
[Close]
BLAST of EWM24447.1 vs. NCBI_GenBank
Match: gi|570942077|gb|ETP07334.1| (hypothetical protein F441_16376 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 184.111 bits (466), Expect = 6.825e-53
Identity = 92/185 (49.73%), Postives = 124/185 (67.03%), Query Frame = 0 
Query:    8 LRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAVEGLSRNVKHRLLQHLRNRERATFQNRDTNDISMQDIEEVCQDIWRCRCVLTGARLGTGKVFALTRY 192
            L+VI+A GAG KADPTRL IG L +   +PLA K+RY L+K+G + + ITT++S EK    LLPL  EQ   P  FG +E+ R+RV+PVLGTMPALFGQ+MAA+VLC+LAG+ + P AV  LSR+ +++L Q L+ RE   F      ++   +IE V Q+IWR R  ++GAR G      L R+
Sbjct:  195 LKVITATGAGAKADPTRLQIGSLKDAVRDPLATKIRYFLKKKGISSSEITTIFSSEKSVCKLLPLDAEQAQNPEQFGNVENFRIRVIPVLGTMPALFGQSMAAYVLCDLAGKKINPEAVARLSRDQRNKLYQKLQQREHVLFHEGHKIELEKDEIEFVYQEIWRGRSSVSGARNGGHDRLYLARW 379
The following BLAST results are available for this feature:
BLAST of EWM24447.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105901|gb|EWM24447.1|3.634e-143100.00mitochondrion protein, partial [Nannochloropsis ga... [more]
gi|585105902|gb|EWM24448.1|2.659e-84100.00mitochondrion protein [Nannochloropsis gaditana][more]
gi|695374400|ref|XP_009515287.1|1.725e-5349.20hypothetical protein PHYSODRAFT_468262 [Phytophtho... [more]
gi|567954702|gb|ETK80335.1|6.199e-5349.73hypothetical protein L915_13965 [Phytophthora para... [more]
gi|970653171|gb|KUF91692.1|6.301e-5349.73Vacuolar-sorting protein SNF7 [Phytophthora nicoti... [more]
gi|675202063|ref|XP_008909916.1|6.681e-5349.73hypothetical protein PPTG_14396 [Phytophthora para... [more]
gi|568042887|gb|ETM40202.1|6.681e-5349.73hypothetical protein L914_13789 [Phytophthora para... [more]
gi|970663934|gb|KUG00981.1|6.752e-5349.73hypothetical protein AM587_10006104 [Phytophthora ... [more]
gi|567983357|gb|ETL33752.1|6.752e-5349.73hypothetical protein L916_13866 [Phytophthora para... [more]
gi|570942077|gb|ETP07334.1|6.825e-5349.73hypothetical protein F441_16376 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6241rna6241Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications