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Properties
| Property Name | Value |
|---|
| Product | mitochondrion protein |
| Orig transcript id | gnl|cribi|Naga_101792g1.8827.mrna |
| Orig protein id | gnl|cribi|Naga_101792g1.8827 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:59823..61295 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6240 ID=rna6240|Name=rna6240|organism=Nannochloropsis gaditana|type=mRNA|length=546bp
CCTCATACACACTGATGCACAACAATTTTTAAATCAGTCCGTAAGTCACA
AAGATGTCTCGCAGTTCTTCAGTACTTTTATTCATGGCGGGCGCTGCGAC
AGCCTCCGTCCTTTTCCTCGCCCTCCACCATCAGCGACGGCGGCAACGCC
ATCAAACCGCCCCTTCCATATCTCAATCTTCACATTCCGTATCCTCCTTG
CCGCCCTCGCTAGAACATGAGCTGTTCGCCCGAGTGGTCTCTTTTTTCGG
GGAGGAATCGTTTCCTCCCATCCAAAAAGCCTTCGTCGTCGTGGTGGGCC
TGGGAGGGGTGGGTTCTCATGCGGCACATATGCTTGTCAGGAGTGGCGTC
CAAAGAATCCGAGTGATAGATTTTGATCAGTCGCCGGTCTGAAAGATGTG
GGTCTATCGAAAGCCGAGGTCCTGAAAACGCGCCTGATGGAACTGGGATT
GCCTCGCCTACAAATCGATGCTTGTCGAGCCCTTTTCAAGATGGACACTG
CCTCCGTATTACTGGGCCCGTGGAAAGGGACAGGAGGGGGAGAGGG back to topprotein sequence of rna6240 >rna6240-protein ID=rna6240-protein|Name=rna6240|organism=Nannochloropsis gaditana|type=polypeptide|length=223bp
MYAQDQDLRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQG
RACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTM
PALFGQAMAAFVLCELAGQSLQPVAVVIPFPIPFLLGRLQMARLLGKMHT
LPSGFSLLLLPCLIFLLTLRTPPSTPKALKLLPPPALPPSLPAPQEGLSR
NVKHRLLQHLRNRERATFQNRDT back to topmRNA from alignment at CM002468.1:59823..61295+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6240 ID=rna6240|Name=rna6240|organism=Nannochloropsis gaditana|type=mRNA|length=1473bp|location=Sequence derived from alignment at CM002468.1:59823..61295+ (Nannochloropsis gaditana)
TCAGTTCTCCCCACGTACGTCCTCGATTGCATCGACGATGTGCAGACCAA
GGCAGAGCTTTTGATGTACGCACAAGATCAAGATTTGCGCGTTATTTCCG
CCCTGGGAGCTGGCCTGAAAGCCGACCCCACTCGTCTCTGCATCGGGTGC
GTGTCCCCGTACGCTCGAACAGATCGAAAAAGAAGCACGGCCTTTCCTTT
GCCCTCGATCCATTtctgttcctccctctttttgacttcttccttgtcct
cgatcAGGGAGCTTGACAACACCAAAAACGAGCCTCTGGCCATCAAGCTC
AGATACCTCCTTCGGAAGCAGGGCCGTGCCTGCACAGGtaccttctctcc
cttgccctctttctctctctaaACCCACCCTAAGTCTCACCTTAACCTTC
AGTCATTCCTCAGTCGTGGCCTATCACCTTCTATGCAACTCGCGCCATCC
TgccccctcattccctctttccctccctcctgtcctcagGCATCACCACC
GTATACTCCCACGAGAAACCGCGCggatccctcctccctctcaccgaCGA
GCAAGAAGCAGCCCCTTCCGATTTCGGAATCCTGGAACACATGCGTCTGC
GTGTCCTGCCTGTCCTTGGTATCtgcctcattcctccctccctccctccc
tccctccctccctccctccctccctccctccttctctctcgcccATTTCA
TCTCCCTatcccgacctcctccctctgttcaCCCTTATTCTTCGGTTCCA
GCATGTGCCATGCTCCGTTCAAGTCCTCTTAccttccctcgttccctccc
tatTTCCCCCTCGTgcgctccttccctgctcccctccctctctgcagGCA
CGATGCCTGCCCTCTTCGGTCAGGCTATGGCCGCCTTCGTCTTGTGCGAG
CTCGCCGGACAATCCCTGCAGCCTGTGGCTGTGGTAAtccccttccccat
tcccttcctccttggtcgTCTCCAGATGGCTCGCTTGCTTGGGAAGATGC
ACACCCTTCCTTCaggcttttccctccttctccttccctgcctcattttt
ctcctcaccctgcgtacccctccttctactcCCAAGGCACTCaaactcct
ccctccccccgccctccctccctccctccctgcccctcagGAAGGACTTT
CTCGCAACGTGAAGCACCGTCTCCTGCAGCATCTACGGAACCGCGAGCGC
GCGACCTTCCAGAACCGCGAcacgtgaggaaggagggaggaagggaggga
gggcgggaaggagggagagccctGTGGTCATCGATGCAGGTCGTCTTCCT
ACGCccacctctcttcttctctatCCAACCCTTGGTCCACGTGCCAGGAA
CGACATCTCCATGCAGGACATCGAGGAAGTGTGTCAAGATATATGGCGCT
GTCGCTGTGTGCTGACAGGGGCCCGTTTAGGAACCGGGAAGGTCTTTGCG
CTCACACGGtacgccttccctcc back to topCoding sequence (CDS) from alignment at CM002468.1:59823..61295+ >rna6240 ID=rna6240|Name=rna6240|organism=Nannochloropsis gaditana|type=CDS|length=2688bp|location=Sequence derived from alignment at CM002468.1:59823..61295+ (Nannochloropsis gaditana)
ATGTACGCACAAGATCAAGATTTGCGCGTTATTTCCGCCCTGGGAGCTGG
CCTGAAAGCCGACCCCACTCGTCTCTGCATCGGGGAGCTTGACAACACCA
AAAACGAGCCTCTGGCCATCAAGCTCAGATACCTCCTTCGGAAGCAGGGC
CGTGCCTGCACAGGCATCACCACCGTATACTCCCACGAGAAACCGCGCgg
atccctcctccctctcaccgaCGAGCAAGAAGCAGCCCCTTCCGATTTCG
GAATCCTGGAACACATGCGTCTGCGTGTCCTGCCTGTCCTTGGCACGATG
CCTGCCCTCTTCGGTCAGGCTATGGCCGCCTTCGTCTTGTGCGAGCTCGC
CGGACAATCCCTGCAGCCTGTGGCTGTGGTAAtccccttccccattccct
tcctccttggtcgTCTCCAGATGGCTCGCTTGCTTGGGAAGATGCACACC
CTTCCTTCaggcttttccctccttctccttccctgcctcatttttctcct
caccctgcgtacccctccttctactcCCAAGGCACTCaaactcctccctc
cccccgccctccctccctccctccctgcccctcagGAAGGACTTTCTCGC
AACGTGAAGCACCGTCTCCTGCAGCATCTACGGAACCGCGAGCGCGCGAC
CTTCCAGAACCGCGAcacgtgaATGTACGCACAAGATCAAGATTTGCGCG
TTATTTCCGCCCTGGGAGCTGGCCTGAAAGCCGACCCCACTCGTCTCTGC
ATCGGGGAGCTTGACAACACCAAAAACGAGCCTCTGGCCATCAAGCTCAG
ATACCTCCTTCGGAAGCAGGGCCGTGCCTGCACAGGCATCACCACCGTAT
ACTCCCACGAGAAACCGCGCggatccctcctccctctcaccgaCGAGCAA
GAAGCAGCCCCTTCCGATTTCGGAATCCTGGAACACATGCGTCTGCGTGT
CCTGCCTGTCCTTGGCACGATGCCTGCCCTCTTCGGTCAGGCTATGGCCG
CCTTCGTCTTGTGCGAGCTCGCCGGACAATCCCTGCAGCCTGTGGCTGTG
GTAAtccccttccccattcccttcctccttggtcgTCTCCAGATGGCTCG
CTTGCTTGGGAAGATGCACACCCTTCCTTCaggcttttccctccttctcc
ttccctgcctcatttttctcctcaccctgcgtacccctccttctactcCC
AAGGCACTCaaactcctccctccccccgccctccctccctccctccctgc
ccctcagGAAGGACTTTCTCGCAACGTGAAGCACCGTCTCCTGCAGCATC
TACGGAACCGCGAGCGCGCGACCTTCCAGAACCGCGAcacgtgaATGTAC
GCACAAGATCAAGATTTGCGCGTTATTTCCGCCCTGGGAGCTGGCCTGAA
AGCCGACCCCACTCGTCTCTGCATCGGGGAGCTTGACAACACCAAAAACG
AGCCTCTGGCCATCAAGCTCAGATACCTCCTTCGGAAGCAGGGCCGTGCC
TGCACAGGCATCACCACCGTATACTCCCACGAGAAACCGCGCggatccct
cctccctctcaccgaCGAGCAAGAAGCAGCCCCTTCCGATTTCGGAATCC
TGGAACACATGCGTCTGCGTGTCCTGCCTGTCCTTGGCACGATGCCTGCC
CTCTTCGGTCAGGCTATGGCCGCCTTCGTCTTGTGCGAGCTCGCCGGACA
ATCCCTGCAGCCTGTGGCTGTGGTAAtccccttccccattcccttcctcc
ttggtcgTCTCCAGATGGCTCGCTTGCTTGGGAAGATGCACACCCTTCCT
TCaggcttttccctccttctccttccctgcctcatttttctcctcaccct
gcgtacccctccttctactcCCAAGGCACTCaaactcctccctccccccg
ccctccctccctccctccctgcccctcagGAAGGACTTTCTCGCAACGTG
AAGCACCGTCTCCTGCAGCATCTACGGAACCGCGAGCGCGCGACCTTCCA
GAACCGCGAcacgtgaATGTACGCACAAGATCAAGATTTGCGCGTTATTT
CCGCCCTGGGAGCTGGCCTGAAAGCCGACCCCACTCGTCTCTGCATCGGG
GAGCTTGACAACACCAAAAACGAGCCTCTGGCCATCAAGCTCAGATACCT
CCTTCGGAAGCAGGGCCGTGCCTGCACAGGCATCACCACCGTATACTCCC
ACGAGAAACCGCGCggatccctcctccctctcaccgaCGAGCAAGAAGCA
GCCCCTTCCGATTTCGGAATCCTGGAACACATGCGTCTGCGTGTCCTGCC
TGTCCTTGGCACGATGCCTGCCCTCTTCGGTCAGGCTATGGCCGCCTTCG
TCTTGTGCGAGCTCGCCGGACAATCCCTGCAGCCTGTGGCTGTGGTAAtc
cccttccccattcccttcctccttggtcgTCTCCAGATGGCTCGCTTGCT
TGGGAAGATGCACACCCTTCCTTCaggcttttccctccttctccttccct
gcctcatttttctcctcaccctgcgtacccctccttctactcCCAAGGCA
CTCaaactcctccctccccccgccctccctccctccctccctgcccctca
gGAAGGACTTTCTCGCAACGTGAAGCACCGTCTCCTGCAGCATCTACGGA
ACCGCGAGCGCGCGACCTTCCAGAACCGCGAcacgtga back to top
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