EWM24448.1, cds6225 (CDS) Nannochloropsis gaditana

Overview
NameEWM24448.1
Unique Namecds6225
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:59886..59968 +
Alignment locationCM002468.1:60080..60159 +
Alignment locationCM002468.1:60312..60440 +
Alignment locationCM002468.1:60670..61049 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24448.1
Productmitochondrion protein
Orig transcript idgnl|cribi|Naga_101792g1.8827.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:59886..59968 +
CM002468.1supercontigCM002468.1:60080..60159 +
CM002468.1supercontigCM002468.1:60312..60440 +
CM002468.1supercontigCM002468.1:60670..61049 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR009036Molybdenum_cofac_synth_MoeB
Homology
BLAST of EWM24448.1 vs. NCBI_GenBank
Match: gi|585105902|gb|EWM24448.1| (mitochondrion protein [Nannochloropsis gaditana])

HSP 1 Score: 443.351 bits (1139), Expect = 2.343e-157
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0
Query:    1 MYAQDQDLRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAVVIPFPIPFLLGRLQMARLLGKMHTLPSGFSLLLLPCLIFLLTLRTPPSTPKALKLLPPPALPPSLPAPQEGLSRNVKHRLLQHLRNRERATFQNRDT 223
            MYAQDQDLRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAVVIPFPIPFLLGRLQMARLLGKMHTLPSGFSLLLLPCLIFLLTLRTPPSTPKALKLLPPPALPPSLPAPQEGLSRNVKHRLLQHLRNRERATFQNRDT
Sbjct:    1 MYAQDQDLRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAVVIPFPIPFLLGRLQMARLLGKMHTLPSGFSLLLLPCLIFLLTLRTPPSTPKALKLLPPPALPPSLPAPQEGLSRNVKHRLLQHLRNRERATFQNRDT 223          
BLAST of EWM24448.1 vs. NCBI_GenBank
Match: gi|585105901|gb|EWM24447.1| (mitochondrion protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 257.684 bits (657), Expect = 3.026e-84
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
Query:    1 MYAQDQDLRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAV 126
            MYAQDQDLRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAV
Sbjct:    1 MYAQDQDLRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAV 126          

HSP 2 Score: 63.929 bits (154), Expect = 4.768e-9
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 0
Query:  192 PAPQEGLSRNVKHRLLQHLRNRERATFQNRDT 223
            P   EGLSRNVKHRLLQHLRNRERATFQNRDT
Sbjct:  123 PVAVEGLSRNVKHRLLQHLRNRERATFQNRDT 154          
BLAST of EWM24448.1 vs. NCBI_GenBank
Match: gi|695374400|ref|XP_009515287.1| (hypothetical protein PHYSODRAFT_468262 [Phytophthora sojae] >gi|348688198|gb|EGZ28012.1| hypothetical protein PHYSODRAFT_468262 [Phytophthora sojae])

HSP 1 Score: 144.821 bits (364), Expect = 1.748e-37
Identity = 69/121 (57.02%), Postives = 92/121 (76.03%), Query Frame = 0
Query:    6 QDLRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAV 126
            ++L+VI+A GAG KADPTRL IG L +   +PLA K+RY L+K+G + + ITT++S EK    LLPL  EQ   P +FG +E+ R+RV+PVLGTMPALFGQ+MAA+VLC+LAG+ + P AV
Sbjct:  196 KNLKVITATGAGAKADPTRLQIGSLKDAVRDPLATKIRYFLKKKGISSSEITTIFSSEKSVCKLLPLGAEQAQNPEEFGNVENFRIRVIPVLGTMPALFGQSMAAYVLCDLAGKKINPEAV 316          
BLAST of EWM24448.1 vs. NCBI_GenBank
Match: gi|301089291|ref|XP_002894959.1| (ubiquitin-activating enzyme (E1), putative [Phytophthora infestans T30-4] >gi|262104477|gb|EEY62529.1| ubiquitin-activating enzyme (E1), putative [Phytophthora infestans T30-4])

HSP 1 Score: 144.436 bits (363), Expect = 2.062e-37
Identity = 69/119 (57.98%), Postives = 90/119 (75.63%), Query Frame = 0
Query:    8 LRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAV 126
            L+VI+A GAG KADPTRL IG L +   +PLA K+RY L+K+G + + ITT++S EK    LLPL  EQ   P +FG +E+ R+RV+PVLGTMPALFGQ+MAA+VLC+LAG+ + P AV
Sbjct:  196 LKVITATGAGAKADPTRLQIGSLKDAVRDPLATKIRYFLKKKGISSSEITTIFSSEKSVCKLLPLDAEQAQNPKEFGNVENFRIRVIPVLGTMPALFGQSMAAYVLCDLAGKKISPEAV 314          
BLAST of EWM24448.1 vs. NCBI_GenBank
Match: gi|970653171|gb|KUF91692.1| (Vacuolar-sorting protein SNF7 [Phytophthora nicotianae])

HSP 1 Score: 143.28 bits (360), Expect = 3.904e-37
Identity = 69/119 (57.98%), Postives = 89/119 (74.79%), Query Frame = 0
Query:    8 LRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAV 126
            L+VI+A GAG KADPTRL IG L +   +PLA K+RY L+K+G + + ITT++S EK    LLPL  EQ   P  FG +E+ R+RV+PVLGTMPALFGQ+MAA+VLC+LAG+ + P AV
Sbjct:  182 LKVITATGAGAKADPTRLQIGSLKDAVRDPLATKIRYFLKKKGISSSEITTIFSSEKSVCKLLPLDAEQAQNPEQFGNVENFRIRVIPVLGTMPALFGQSMAAYVLCDLAGKKINPEAV 300          
BLAST of EWM24448.1 vs. NCBI_GenBank
Match: gi|570942077|gb|ETP07334.1| (hypothetical protein F441_16376 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 143.665 bits (361), Expect = 4.351e-37
Identity = 69/119 (57.98%), Postives = 89/119 (74.79%), Query Frame = 0
Query:    8 LRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAV 126
            L+VI+A GAG KADPTRL IG L +   +PLA K+RY L+K+G + + ITT++S EK    LLPL  EQ   P  FG +E+ R+RV+PVLGTMPALFGQ+MAA+VLC+LAG+ + P AV
Sbjct:  195 LKVITATGAGAKADPTRLQIGSLKDAVRDPLATKIRYFLKKKGISSSEITTIFSSEKSVCKLLPLDAEQAQNPEQFGNVENFRIRVIPVLGTMPALFGQSMAAYVLCDLAGKKINPEAV 313          
BLAST of EWM24448.1 vs. NCBI_GenBank
Match: gi|675202063|ref|XP_008909916.1| (hypothetical protein PPTG_14396 [Phytophthora parasitica INRA-310] >gi|568089682|gb|ETN04522.1| hypothetical protein PPTG_14396 [Phytophthora parasitica INRA-310] >gi|570321010|gb|ETO68958.1| hypothetical protein F444_14332 [Phytophthora parasitica P1976])

HSP 1 Score: 143.665 bits (361), Expect = 4.537e-37
Identity = 69/119 (57.98%), Postives = 89/119 (74.79%), Query Frame = 0
Query:    8 LRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAV 126
            L+VI+A GAG KADPTRL IG L +   +PLA K+RY L+K+G + + ITT++S EK    LLPL  EQ   P  FG +E+ R+RV+PVLGTMPALFGQ+MAA+VLC+LAG+ + P AV
Sbjct:  195 LKVITATGAGAKADPTRLQIGSLKDAVRDPLATKIRYFLKKKGISSSEITTIFSSEKSVCKLLPLDAEQAQNPEQFGNVENFRIRVIPVLGTMPALFGQSMAAYVLCDLAGKKINPEAV 313          
BLAST of EWM24448.1 vs. NCBI_GenBank
Match: gi|568012863|gb|ETL87040.1| (hypothetical protein L917_13659 [Phytophthora parasitica] >gi|570976304|gb|ETP38142.1| hypothetical protein F442_14172 [Phytophthora parasitica P10297])

HSP 1 Score: 143.665 bits (361), Expect = 4.682e-37
Identity = 69/119 (57.98%), Postives = 89/119 (74.79%), Query Frame = 0
Query:    8 LRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAV 126
            L+VI+A GAG KADPTRL IG L +   +PLA K+RY L+K+G + + ITT++S EK    LLPL  EQ   P  FG +E+ R+RV+PVLGTMPALFGQ+MAA+VLC+LAG+ + P AV
Sbjct:  195 LKVITATGAGAKADPTRLQIGSLKDAVRDPLATKIRYFLKKKGISSSEITTIFSSEKSVCKLLPLDAEQAQNPEQFGNVENFRIRVIPVLGTMPALFGQSMAAYVLCDLAGKKINPEAV 313          
BLAST of EWM24448.1 vs. NCBI_GenBank
Match: gi|567954702|gb|ETK80335.1| (hypothetical protein L915_13965 [Phytophthora parasitica])

HSP 1 Score: 143.28 bits (360), Expect = 5.090e-37
Identity = 69/119 (57.98%), Postives = 89/119 (74.79%), Query Frame = 0
Query:    8 LRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAV 126
            L+VI+A GAG KADPTRL IG L +   +PLA K+RY L+K+G + + ITT++S EK    LLPL  EQ   P  FG +E+ R+RV+PVLGTMPALFGQ+MAA+VLC+LAG+ + P AV
Sbjct:  195 LKVITATGAGAKADPTRLQIGSLKDAVRDPLATKIRYFLKKKGISSSEITTIFSSEKSVCKLLPLDAEQAQNPEQFGNVENFRIRVIPVLGTMPALFGQSMAAYVLCDLAGKKINPEAV 313          
BLAST of EWM24448.1 vs. NCBI_GenBank
Match: gi|970663934|gb|KUG00981.1| (hypothetical protein AM587_10006104 [Phytophthora nicotianae])

HSP 1 Score: 143.28 bits (360), Expect = 5.144e-37
Identity = 69/119 (57.98%), Postives = 89/119 (74.79%), Query Frame = 0
Query:    8 LRVISALGAGLKADPTRLCIGELDNTKNEPLAIKLRYLLRKQGRACTGITTVYSHEKPRGSLLPLTDEQEAAPSDFGILEHMRLRVLPVLGTMPALFGQAMAAFVLCELAGQSLQPVAV 126
            L+VI+A GAG KADPTRL IG L +   +PLA K+RY L+K+G + + ITT++S EK    LLPL  EQ   P  FG +E+ R+RV+PVLGTMPALFGQ+MAA+VLC+LAG+ + P AV
Sbjct:  195 LKVITATGAGAKADPTRLQIGSLKDAVRDPLATKIRYFLKKKGISSSEITTIFSSEKSVCKLLPLDAEQAQNPEQFGNVENFRIRVIPVLGTMPALFGQSMAAYVLCDLAGKKINPEAV 313          
The following BLAST results are available for this feature:
BLAST of EWM24448.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105902|gb|EWM24448.1|2.343e-157100.00mitochondrion protein [Nannochloropsis gaditana][more]
gi|585105901|gb|EWM24447.1|3.026e-84100.00mitochondrion protein, partial [Nannochloropsis ga... [more]
gi|695374400|ref|XP_009515287.1|1.748e-3757.02hypothetical protein PHYSODRAFT_468262 [Phytophtho... [more]
gi|301089291|ref|XP_002894959.1|2.062e-3757.98ubiquitin-activating enzyme (E1), putative [Phytop... [more]
gi|970653171|gb|KUF91692.1|3.904e-3757.98Vacuolar-sorting protein SNF7 [Phytophthora nicoti... [more]
gi|570942077|gb|ETP07334.1|4.351e-3757.98hypothetical protein F441_16376 [Phytophthora para... [more]
gi|675202063|ref|XP_008909916.1|4.537e-3757.98hypothetical protein PPTG_14396 [Phytophthora para... [more]
gi|568012863|gb|ETL87040.1|4.682e-3757.98hypothetical protein L917_13659 [Phytophthora para... [more]
gi|567954702|gb|ETK80335.1|5.090e-3757.98hypothetical protein L915_13965 [Phytophthora para... [more]
gi|970663934|gb|KUG00981.1|5.144e-3757.98hypothetical protein AM587_10006104 [Phytophthora ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6240rna6240Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications