rna6237, rna6237 (mRNA) Nannochloropsis gaditana

Overview
Namerna6237
Unique Namerna6237
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length321
Alignment locationCM002468.1:51112..52622 +

Link to JBrowse

Properties
Property NameValue
Productadenylate kinase isoenzyme 6
Orig transcript idgnl|cribi|Naga_100486g4.7026.mrna
Orig protein idgnl|cribi|Naga_100486g4.7026
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:51112..52622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100486g4gene6028Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6237rna6237-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24450.1cds6222Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6237 ID=rna6237|Name=rna6237|organism=Nannochloropsis gaditana|type=mRNA|length=321bp
ATGAAATGCATGCACGCCACACGTAGTAGGGGCAGCTGGACTACTGACTA
CTGGTGCACAGGGAAGTTTGCGTGCTCCCTTTGGTGGGATGTGGCCCTCC
CTGCTTCAATTGGCCAACTCTCGGTCTGCACGGGCTCCCCGCTTTTGGAG
AATAAAAGTCCAGCACTATACCTTTTCAATGATGAAAGGGTATTCTCACA
CTGTTTGGTGCGGTTCGCATGCGGAGCACATCTTTTTTTCTCACAAATTT
TATCGTTGTTCTCCGGCGTTATTGATGTCGCACACACAGCATTTAGTGAA
GATACCAACCTGTCTCATTGA
back to top

protein sequence of rna6237

>rna6237-protein ID=rna6237-protein|Name=rna6237|organism=Nannochloropsis gaditana|type=polypeptide|length=201bp
MDGTRPHRTNPLLRASLKRPNILITGTPGTGKTTTARYIAGATGLEHVSV
GDVAKEKECFEGRDVELDTNILDEEKLLDHLEIILADGGKVVDYHSCELF
PERWFDLILVVRATNAVLFDRLSARGYSTRKREENLECEIMQVVLDEALE
SYEKEIVHEITSETEDDLQENAQRVKDWLIAGIESKRRRAWKNDRYFKLR
C
back to top

mRNA from alignment at CM002468.1:51112..52622+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6237 ID=rna6237|Name=rna6237|organism=Nannochloropsis gaditana|type=mRNA|length=1511bp|location=Sequence derived from alignment at CM002468.1:51112..52622+ (Nannochloropsis gaditana)
ATGGACGGAACTCGTCCACACAGAACgaatcctctcctccgcgctAGCTT GAAAAGGCCCAACATTCTTATCACTGGCACGCCAGGTACGGGAAAGACGA CCACTGCCCGCTATATTGCGGTACGTAAAGGAGCTCGGAAAACAATGGGC GAGAGAATGCCTAGGGAGGCGACGACAGGAGTTGAGACGGCTGCGCACCT AACAGGAAGGAGATTGAGAATGAAAGGATGGAATAAATTGGTAGATGTGC AGGGTAGCTAATCAGCAGTGGGGTCGAATCTCTGAGAGCGCGCTGTGGAG GCGACCCCCTGGAAGTCAGGGGCCTCCACCCGTGGCAGTGAACAAATTTA TCGTGGAAGAAACCTCCGCGCTCCGCTCCTTTTGCACAAGACCAGCTTTC TCCATGCTCGATGGCTCACGCCTGCCTTGCAATATACACAGGGGGCGACC GGCTTAGAGCACGTCAGTGTGGGTGACGTtgccaaggagaaggagtgcTT TGAGGGGCGGGACGTGGAGCTCGACACCAACATTTTGGATGAAGAAAAGG TACTTCAAATCTGCAATCTTTTATATATCTCCTCCTATATCCTTTCCTGC GCGTgtgggaaggcaaggcaTGGGGTCATTTCTTGCCCCCGGCAGTCCTT GTAGTCTCCGGCGATTTGACACTTATGACTAAGACCCGGGCGTGTCCTCG TCTTACTTGTTCTTTCCAGTTACTTGACCATCTGGAAATTATTCTGgcag acggagggaaggtggtAGACTATCACTCCTGCGAGCTTTTCCCGGAACGG TGCGTTTTGCCTTTGCTcgttcttttcttcctctcccctggcTGTTTTCA AGTAATGTCGTGTCGTTGTCGAGTAAAAGAGCTGCGTGATGATATTTCTG CTTTAGAGTTATCATCTCCACTGCCTTCGTACTTCTAGATGGTTTGATCT GATCCTCGTGGTGCGGGCGACCAACGCAGTCCTTTTTGACCGGCTCTCTG CTCGAGGGTATAGCACCCGGAAACGGGAGGAGAATTTGGAGTGTGAAATA ATGCAGGTTAGTTTGTTGCATATCGGGAGGCTTTCACGTTCACAATGGAT CAGAAAAGAGGGGCTGAGCGTTGAGGAATTGGTTCTTAGATGCTCCAGAG CATTTCGGTAGCTTTTCCGTCTTCTTCTCATGACCACCATCCCATCTAAT CCTCTCTTTTGTTtatttttaatttttttgTCCCCCTCTAGGTAGTATTG GACGAAGCCCTTGAGAGCTACGAGAAAGAAATCGTGCACGAAATTACAAG CGAGACAGAAGATGACTTGCAAGAAAATGCTCAACGTGTCAAGGATTGGT TAACGCAATGGAAGGTAGAGTATTTGCTCAATTATGGGTTTGAGGGCCAC AATATATTTATCTAATAAAATTTTCGTGTCCATTGCAGGTTGATTGCCGG GATCGAGtccaagaggcggagggcatggaagaaTGATCGGTATTTTAAAT TGCGATGCTAG
back to top

Coding sequence (CDS) from alignment at CM002468.1:51112..52622+

>rna6237 ID=rna6237|Name=rna6237|organism=Nannochloropsis gaditana|type=CDS|length=3636bp|location=Sequence derived from alignment at CM002468.1:51112..52622+ (Nannochloropsis gaditana)
ATGGACGGAACTCGTCCACACAGAACgaatcctctcctccgcgctAGCTT
GAAAAGGCCCAACATTCTTATCACTGGCACGCCAGGTACGGGAAAGACGA
CCACTGCCCGCTATATTGCGGGGGCGACCGGCTTAGAGCACGTCAGTGTG
GGTGACGTtgccaaggagaaggagtgcTTTGAGGGGCGGGACGTGGAGCT
CGACACCAACATTTTGGATGAAGAAAAGTTACTTGACCATCTGGAAATTA
TTCTGgcagacggagggaaggtggtAGACTATCACTCCTGCGAGCTTTTC
CCGGAACGATGGTTTGATCTGATCCTCGTGGTGCGGGCGACCAACGCAGT
CCTTTTTGACCGGCTCTCTGCTCGAGGGTATAGCACCCGGAAACGGGAGG
AGAATTTGGAGTGTGAAATAATGCAGGTAGTATTGGACGAAGCCCTTGAG
AGCTACGAGAAAGAAATCGTGCACGAAATTACAAGCGAGACAGAAGATGA
CTTGCAAGAAAATGCTCAACGTGTCAAGGATTGGTTGATTGCCGGGATCG
AGtccaagaggcggagggcatggaagaaTGATCGGTATTTTAAATTGCGA
TGCTAGATGGACGGAACTCGTCCACACAGAACgaatcctctcctccgcgc
tAGCTTGAAAAGGCCCAACATTCTTATCACTGGCACGCCAGGTACGGGAA
AGACGACCACTGCCCGCTATATTGCGGGGGCGACCGGCTTAGAGCACGTC
AGTGTGGGTGACGTtgccaaggagaaggagtgcTTTGAGGGGCGGGACGT
GGAGCTCGACACCAACATTTTGGATGAAGAAAAGTTACTTGACCATCTGG
AAATTATTCTGgcagacggagggaaggtggtAGACTATCACTCCTGCGAG
CTTTTCCCGGAACGATGGTTTGATCTGATCCTCGTGGTGCGGGCGACCAA
CGCAGTCCTTTTTGACCGGCTCTCTGCTCGAGGGTATAGCACCCGGAAAC
GGGAGGAGAATTTGGAGTGTGAAATAATGCAGGTAGTATTGGACGAAGCC
CTTGAGAGCTACGAGAAAGAAATCGTGCACGAAATTACAAGCGAGACAGA
AGATGACTTGCAAGAAAATGCTCAACGTGTCAAGGATTGGTTGATTGCCG
GGATCGAGtccaagaggcggagggcatggaagaaTGATCGGTATTTTAAA
TTGCGATGCTAGATGGACGGAACTCGTCCACACAGAACgaatcctctcct
ccgcgctAGCTTGAAAAGGCCCAACATTCTTATCACTGGCACGCCAGGTA
CGGGAAAGACGACCACTGCCCGCTATATTGCGGGGGCGACCGGCTTAGAG
CACGTCAGTGTGGGTGACGTtgccaaggagaaggagtgcTTTGAGGGGCG
GGACGTGGAGCTCGACACCAACATTTTGGATGAAGAAAAGTTACTTGACC
ATCTGGAAATTATTCTGgcagacggagggaaggtggtAGACTATCACTCC
TGCGAGCTTTTCCCGGAACGATGGTTTGATCTGATCCTCGTGGTGCGGGC
GACCAACGCAGTCCTTTTTGACCGGCTCTCTGCTCGAGGGTATAGCACCC
GGAAACGGGAGGAGAATTTGGAGTGTGAAATAATGCAGGTAGTATTGGAC
GAAGCCCTTGAGAGCTACGAGAAAGAAATCGTGCACGAAATTACAAGCGA
GACAGAAGATGACTTGCAAGAAAATGCTCAACGTGTCAAGGATTGGTTGA
TTGCCGGGATCGAGtccaagaggcggagggcatggaagaaTGATCGGTAT
TTTAAATTGCGATGCTAGATGGACGGAACTCGTCCACACAGAACgaatcc
tctcctccgcgctAGCTTGAAAAGGCCCAACATTCTTATCACTGGCACGC
CAGGTACGGGAAAGACGACCACTGCCCGCTATATTGCGGGGGCGACCGGC
TTAGAGCACGTCAGTGTGGGTGACGTtgccaaggagaaggagtgcTTTGA
GGGGCGGGACGTGGAGCTCGACACCAACATTTTGGATGAAGAAAAGTTAC
TTGACCATCTGGAAATTATTCTGgcagacggagggaaggtggtAGACTAT
CACTCCTGCGAGCTTTTCCCGGAACGATGGTTTGATCTGATCCTCGTGGT
GCGGGCGACCAACGCAGTCCTTTTTGACCGGCTCTCTGCTCGAGGGTATA
GCACCCGGAAACGGGAGGAGAATTTGGAGTGTGAAATAATGCAGGTAGTA
TTGGACGAAGCCCTTGAGAGCTACGAGAAAGAAATCGTGCACGAAATTAC
AAGCGAGACAGAAGATGACTTGCAAGAAAATGCTCAACGTGTCAAGGATT
GGTTGATTGCCGGGATCGAGtccaagaggcggagggcatggaagaaTGAT
CGGTATTTTAAATTGCGATGCTAGATGGACGGAACTCGTCCACACAGAAC
gaatcctctcctccgcgctAGCTTGAAAAGGCCCAACATTCTTATCACTG
GCACGCCAGGTACGGGAAAGACGACCACTGCCCGCTATATTGCGGGGGCG
ACCGGCTTAGAGCACGTCAGTGTGGGTGACGTtgccaaggagaaggagtg
cTTTGAGGGGCGGGACGTGGAGCTCGACACCAACATTTTGGATGAAGAAA
AGTTACTTGACCATCTGGAAATTATTCTGgcagacggagggaaggtggtA
GACTATCACTCCTGCGAGCTTTTCCCGGAACGATGGTTTGATCTGATCCT
CGTGGTGCGGGCGACCAACGCAGTCCTTTTTGACCGGCTCTCTGCTCGAG
GGTATAGCACCCGGAAACGGGAGGAGAATTTGGAGTGTGAAATAATGCAG
GTAGTATTGGACGAAGCCCTTGAGAGCTACGAGAAAGAAATCGTGCACGA
AATTACAAGCGAGACAGAAGATGACTTGCAAGAAAATGCTCAACGTGTCA
AGGATTGGTTGATTGCCGGGATCGAGtccaagaggcggagggcatggaag
aaTGATCGGTATTTTAAATTGCGATGCTAGATGGACGGAACTCGTCCACA
CAGAACgaatcctctcctccgcgctAGCTTGAAAAGGCCCAACATTCTTA
TCACTGGCACGCCAGGTACGGGAAAGACGACCACTGCCCGCTATATTGCG
GGGGCGACCGGCTTAGAGCACGTCAGTGTGGGTGACGTtgccaaggagaa
ggagtgcTTTGAGGGGCGGGACGTGGAGCTCGACACCAACATTTTGGATG
AAGAAAAGTTACTTGACCATCTGGAAATTATTCTGgcagacggagggaag
gtggtAGACTATCACTCCTGCGAGCTTTTCCCGGAACGATGGTTTGATCT
GATCCTCGTGGTGCGGGCGACCAACGCAGTCCTTTTTGACCGGCTCTCTG
CTCGAGGGTATAGCACCCGGAAACGGGAGGAGAATTTGGAGTGTGAAATA
ATGCAGGTAGTATTGGACGAAGCCCTTGAGAGCTACGAGAAAGAAATCGT
GCACGAAATTACAAGCGAGACAGAAGATGACTTGCAAGAAAATGCTCAAC
GTGTCAAGGATTGGTTGATTGCCGGGATCGAGtccaagaggcggagggca
tggaagaaTGATCGGTATTTTAAATTGCGATGCTAG
back to top
Synonyms
Publications