EWM24450.1, cds6222 (CDS) Nannochloropsis gaditana

Overview
NameEWM24450.1
Unique Namecds6222
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:51112..51231 +
Alignment locationCM002468.1:51553..51660 +
Alignment locationCM002468.1:51831..51910 +
Alignment locationCM002468.1:52050..52167 +
Alignment locationCM002468.1:52353..52459 +
Alignment locationCM002468.1:52550..52622 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24450.1
Productadenylate kinase isoenzyme 6
Orig transcript idgnl|cribi|Naga_100486g4.7026.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:51112..51231 +
CM002468.1supercontigCM002468.1:51553..51660 +
CM002468.1supercontigCM002468.1:51831..51910 +
CM002468.1supercontigCM002468.1:52050..52167 +
CM002468.1supercontigCM002468.1:52353..52459 +
CM002468.1supercontigCM002468.1:52550..52622 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0016301kinase activity
GO:0008135translation factor activity, RNA binding
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0004017adenylate kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR020618Adenyl_kinase_AK6
IPR027417P-loop_NTPase
Homology
BLAST of EWM24450.1 vs. NCBI_GenBank
Match: gi|585105905|gb|EWM24450.1| (adenylate kinase isoenzyme 6 [Nannochloropsis gaditana])

HSP 1 Score: 412.149 bits (1058), Expect = 1.169e-145
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0
Query:    1 MDGTRPHRTNPLLRASLKRPNILITGTPGTGKTTTARYIAGATGLEHVSVGDVAKEKECFEGRDVELDTNILDEEKLLDHLEIILADGGKVVDYHSCELFPERWFDLILVVRATNAVLFDRLSARGYSTRKREENLECEIMQVVLDEALESYEKEIVHEITSETEDDLQENAQRVKDWLIAGIESKRRRAWKNDRYFKLRC 201
            MDGTRPHRTNPLLRASLKRPNILITGTPGTGKTTTARYIAGATGLEHVSVGDVAKEKECFEGRDVELDTNILDEEKLLDHLEIILADGGKVVDYHSCELFPERWFDLILVVRATNAVLFDRLSARGYSTRKREENLECEIMQVVLDEALESYEKEIVHEITSETEDDLQENAQRVKDWLIAGIESKRRRAWKNDRYFKLRC
Sbjct:    1 MDGTRPHRTNPLLRASLKRPNILITGTPGTGKTTTARYIAGATGLEHVSVGDVAKEKECFEGRDVELDTNILDEEKLLDHLEIILADGGKVVDYHSCELFPERWFDLILVVRATNAVLFDRLSARGYSTRKREENLECEIMQVVLDEALESYEKEIVHEITSETEDDLQENAQRVKDWLIAGIESKRRRAWKNDRYFKLRC 201          
BLAST of EWM24450.1 vs. NCBI_GenBank
Match: gi|553193436|ref|XP_005855774.1| (transcription initiation factor TFIID subunit 9 / adenylate kinase, partial [Nannochloropsis gaditana CCMP526] >gi|422293278|gb|EKU20578.1| transcription initiation factor TFIID subunit 9 / adenylate kinase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 325.094 bits (832), Expect = 1.688e-111
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0
Query:   20 PNILITGTPGTGKTTTARYIAGATGLEHVSVGDVAKEKECFEGRDVELDTNILDEEKLLDHLEIILADGGKVVDYHSCELFPERWFDLILVVRATNAVLFDRLSARGYSTRKREENLECEIMQVVLDEALESYEKEIVHEITSETEDDLQENAQRVKDWL 179
            PNILITGTPGTGKTTTARYIAGATGLEHVSVGDVAKEKECFEGRDVELDTNILDEEKLLDHLEIILADGGKVVDYHSCELFPERWFDLILVVRATNAVLFDRLSARGYSTRKREENLECEIMQVVLDEALESYEKEIVHEITSETEDDLQENAQRVKDWL
Sbjct:    1 PNILITGTPGTGKTTTARYIAGATGLEHVSVGDVAKEKECFEGRDVELDTNILDEEKLLDHLEIILADGGKVVDYHSCELFPERWFDLILVVRATNAVLFDRLSARGYSTRKREENLECEIMQVVLDEALESYEKEIVHEITSETEDDLQENAQRVKDWL 160          
BLAST of EWM24450.1 vs. NCBI_GenBank
Match: gi|1072230900|gb|OEU15633.1| (P-loop containing nucleoside triphosphate hydrolase protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 210.305 bits (534), Expect = 4.444e-66
Identity = 105/175 (60.00%), Postives = 133/175 (76.00%), Query Frame = 0
Query:   19 RPNILITGTPGTGKTTTARYIAGATGLEHVSVGDVAKEKECFEGRDVELDTNILDEEKLLDHLEIIL----ADG-GKVVDYHSCELFPERWFDLILVVRATNAVLFDRLSARGYSTRKREENLECEIMQVVLDEALESYEKEIVHEITSETEDDLQENAQRVKDWLIAGIESKRR 188
            RP +LITGTPGTGKT+TA  IA  TG++HV+VGD+ KE +C EGRD +LDTNILDE+KLLD +E+IL     DG G V D+H CE+FPERWFDLI+ +R +  VLFDRL+ARGY+ +KR EN+E EIMQV+LDEA ESY +EIVHE  S T +D++ N  RV+ W    I+ K +
Sbjct:   10 RPFVLITGTPGTGKTSTASLIAERTGMKHVNVGDLIKEHKCHEGRDEDLDTNILDEDKLLDAMEVILDKAAEDGQGIVADFHVCEIFPERWFDLIICLRTSTDVLFDRLTARGYNEKKRSENMEAEIMQVILDEARESYAQEIVHECPSNTVEDMETNVTRVEQWGKQWIKDKDK 184          
BLAST of EWM24450.1 vs. NCBI_GenBank
Match: gi|219122202|ref|XP_002181440.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407426|gb|EEC47363.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 208.379 bits (529), Expect = 1.547e-65
Identity = 102/166 (61.45%), Postives = 128/166 (77.11%), Query Frame = 0
Query:   18 KRPNILITGTPGTGKTTTARYIAGATGLEHVSVGDVAKEKECFEGRDVELDTNILDEEKLLDHLEIILADG-----GKVVDYHSCELFPERWFDLILVVRATNAVLFDRLSARGYSTRKREENLECEIMQVVLDEALESYEKEIVHEITSETEDDLQENAQRVKDW 178
            KRPN+LITGTPGTGKT TA  +A   G++HVS GD+AKE + +EGRD ELDTNILDE+KL+D LE IL +      G VVD+H CE+FPERWFDL+LV+RA   VLFDRL+ R YS +KR EN+E EIMQV+LDEA ESY+  IVHE+ S T ++++ N +RV+ W
Sbjct:    3 KRPNVLITGTPGTGKTATASLLAERLGMKHVSPGDLAKEHKLYEGRDEELDTNILDEDKLIDLLENILEEAEQEGVGVVVDFHVCEIFPERWFDLVLVLRARTEVLFDRLTTRAYSEKKRAENMESEIMQVILDEARESYDPLIVHEVPSNTLEEMESNIERVRLW 168          
BLAST of EWM24450.1 vs. NCBI_GenBank
Match: gi|299471763|emb|CBN76984.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 207.223 bits (526), Expect = 4.984e-65
Identity = 98/162 (60.49%), Postives = 122/162 (75.31%), Query Frame = 0
Query:   20 PNILITGTPGTGKTTTARYIAGATGLEHVSVGDVAKEKECFEGRDVELDTNILDEEKLLDHLEIILADGGKVVDYHSCELFPERWFDLILVVRATNAVLFDRLSARGYSTRKREENLECEIMQVVLDEALESYEKEIVHEITSETEDDLQENAQRVKDWLIA 181
            PN+LITGTPGTGKT T++ IA  TGL H++VGDV + K+C EGRD   DT ILDE+KL D +E  + +GG V+D+HSC+ FPE WFDLILV+RA  + LFDRL ARGYS +K  EN+ECEIMQVVL+EA E Y +E VHE+ S T ++L+ N  RV  WL A
Sbjct:    7 PNVLITGTPGTGKTCTSQQIAERTGLRHINVGDVVRLKQCHEGRDESFDTFILDEDKLCDAMETQMEEGGNVIDFHSCDFFPEHWFDLILVLRAETSTLFDRLKARGYSEKKVGENVECEIMQVVLEEAKEGYPEEAVHEVPSNTIEELESNVSRVAQWLDA 168          
BLAST of EWM24450.1 vs. NCBI_GenBank
Match: gi|1191056655|ref|XP_020906412.1| (adenylate kinase isoenzyme 6-like [Exaiptasia pallida] >gi|999971727|gb|KXJ10901.1| Adenylate kinase isoenzyme 6 [Exaiptasia pallida])

HSP 1 Score: 203.371 bits (516), Expect = 1.593e-63
Identity = 88/168 (52.38%), Postives = 128/168 (76.19%), Query Frame = 0
Query:   12 LLRASLKRPNILITGTPGTGKTTTARYIAGATGLEHVSVGDVAKEKECFEGRDVELDTNILDEEKLLDHLEIILADGGKVVDYHSCELFPERWFDLILVVRATNAVLFDRLSARGYSTRKREENLECEIMQVVLDEALESYEKEIVHEITSETEDDLQENAQRVKDWL 179
            +  AS  RPNIL+TGTPGTGK+ T   ++  TGL ++++G++AKE + FEG D EL+ ++LDE+K++D +E I++DGG +VDYH CE FPERWFD++ V+R  N VL+DRL  RGY+ +K   N+ECEI Q +L+EA ESY+KEIVHE+ S T +DL+ N ++++ W+
Sbjct:    1 MASASRSRPNILLTGTPGTGKSVTGIELSQRTGLNYINIGEIAKENDLFEGWDDELECHVLDEDKVIDEMEDIMSDGGNIVDYHGCEFFPERWFDIVFVLRTDNTVLYDRLQQRGYTEKKLTNNVECEIFQTILEEAKESYKKEIVHELPSNTSEDLERNLEQIEQWV 168          
BLAST of EWM24450.1 vs. NCBI_GenBank
Match: gi|223997586|ref|XP_002288466.1| (hypothetical protein THAPSDRAFT_32766 [Thalassiosira pseudonana CCMP1335] >gi|220975574|gb|EED93902.1| hypothetical protein THAPSDRAFT_32766 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 203.756 bits (517), Expect = 1.676e-63
Identity = 98/166 (59.04%), Postives = 125/166 (75.30%), Query Frame = 0
Query:   18 KRPNILITGTPGTGKTTTARYIAGATGLEHVSVGDVAKEKECFEGRDVELDTNILDEEKLLDHLEIILADG-----GKVVDYHSCELFPERWFDLILVVRATNAVLFDRLSARGYSTRKREENLECEIMQVVLDEALESYEKEIVHEITSETEDDLQENAQRVKDW 178
            KRPNIL+TGTPG GKT TA  +A  TGL H++VG++ KE +C++G D  LDT+ILDE+KLLD +E I  +      G V DYHSCELFPERWFDLI+V+RA   VL+DRL+ RGY+ +KR EN+E EIMQVVLDEA E+Y+ EIV E+ S T +D++ N +R K W
Sbjct:   10 KRPNILVTGTPGVGKTVTAALLAEKTGLRHINVGELIKEHKCYDGHDDTLDTHILDEDKLLDLMEAIFQECEDENVGIVADYHSCELFPERWFDLIMVLRANTEVLYDRLTERGYNEKKRSENVEAEIMQVVLDEAKEAYDVEIVQEVQSNTVEDMESNVERCKAW 175          
BLAST of EWM24450.1 vs. NCBI_GenBank
Match: gi|397612891|gb|EJK61934.1| (hypothetical protein THAOC_17484 [Thalassiosira oceanica])

HSP 1 Score: 202.601 bits (514), Expect = 3.565e-63
Identity = 102/167 (61.08%), Postives = 124/167 (74.25%), Query Frame = 0
Query:   18 KRPNILITGTPGTGKTTTARYIAGATGLEHVSVGDVAKEKECFEGRDVELDTNILDEEKLLDHLEIILA-----DGGKVVDYHSCELFPERWFDLILVVRATNAVLFDRLSARGYSTRKREENLECEIMQVVLDEALESYEKEIVHEITSETEDDLQENAQRVKDWL 179
            KRPNILITGTPG GKT TA  IA   G  HV+VGD+ K+ +C++GRD +LDT+ILDE+KLLD +E +       + G V DYHS ELFPERWFDLILV+RA   VLFDRLS RGY  +KR+ENLE EIMQV LDEA ESY+KEIV E+ S T ++++ N  R K W+
Sbjct:    7 KRPNILITGTPGVGKTATASLIAEQIGFRHVNVGDLIKQHKCYDGRDEDLDTHILDEDKLLDLMESMFQECADENKGIVADYHSSELFPERWFDLILVLRARTEVLFDRLSQRGYGEKKRDENLEAEIMQVCLDEAKESYDKEIVVEVHSNTIEEMESNVDRCKIWV 173          
BLAST of EWM24450.1 vs. NCBI_GenBank
Match: gi|1183422110|gb|ORY46443.1| (P-loop containing nucleoside triphosphate hydrolase protein [Rhizoclosmatium globosum])

HSP 1 Score: 193.356 bits (490), Expect = 2.254e-59
Identity = 89/180 (49.44%), Postives = 129/180 (71.67%), Query Frame = 0
Query:    1 MDGTRPHRTNPLLRASLKRPNILITGTPGTGKTTTARYIAGAT-GLEHVSVGDVAKEKECFEGRDVELDTNILDEEKLLDHLEIILADGGKVVDYHSCELFPERWFDLILVVRATNAVLFDRLSARGYSTRKREENLECEIMQVVLDEALESYEKEIVHEITSETEDDLQENAQRVKDWL 179
            MD    + + P +R     PNILITGTPGTGKT T+  +A A  G+ H+ VG + KEK   +G D E ++ +++E+K++D +E ++ +GGKVVD+H CE FPERWFDL++V+RA N++L+ RL  RGY+T+K  EN+ECEIM VV  EA ESY+  I+ E+ SET +D++EN QR++ W+
Sbjct:    1 MDSDSDNESAPEMRQR-SFPNILITGTPGTGKTVTSSMVAQAVPGMTHIEVGKLVKEKALHDGYDAEFNSYLINEDKVVDEMEEMMQEGGKVVDHHGCEFFPERWFDLVVVLRANNSILYPRLEGRGYNTKKITENIECEIMDVVKIEAFESYDSSIIVELKSETIEDMEENVQRIETWI 179          
BLAST of EWM24450.1 vs. NCBI_GenBank
Match: gi|1046803723|gb|OCL09654.1| (P-loop containing nucleoside triphosphate hydrolase protein [Glonium stellatum])

HSP 1 Score: 191.815 bits (486), Expect = 5.879e-59
Identity = 88/169 (52.07%), Postives = 129/169 (76.33%), Query Frame = 0
Query:   19 RPNILITGTPGTGKTTTARYIAGATGLEHVSVGDVAKEKECFEGRDVELDTNILDEEKLLDHLEIILADGGKVVDYHSCELFPERWFDLILVVRATNAVLFDRLSARGYSTRKREENLECEIMQVVLDEALESYEKEIVHEITSETEDDLQENAQRVKDWLIAGIESKR 187
             PNI+ITGTPG GKTT A  +A    L+H+ +  +AKE++C+EG D EL T I+DE+KLLD LE ++A GG ++D+H+C+LFP+RW DL++V+R  +  LFDRL+ARGYS +K +EN++ EIMQV+L+EA E Y++EIV E+ SE  +D+++N +R++ W+ A  ESK 
Sbjct:    4 NPNIVITGTPGVGKTTHAELLARNMALKHLPINQIAKEQDCYEGWDDELQTWIVDEDKLLDALEPLVASGGCILDWHACDLFPQRWVDLVVVIRCDSTTLFDRLTARGYSGKKLDENMDAEIMQVLLEEAKEGYDEEIVVELHSEVAEDVEQNVERIEKWIEAWKESKN 172          
The following BLAST results are available for this feature:
BLAST of EWM24450.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105905|gb|EWM24450.1|1.169e-145100.00adenylate kinase isoenzyme 6 [Nannochloropsis gadi... [more]
gi|553193436|ref|XP_005855774.1|1.688e-111100.00transcription initiation factor TFIID subunit 9 / ... [more]
gi|1072230900|gb|OEU15633.1|4.444e-6660.00P-loop containing nucleoside triphosphate hydrolas... [more]
gi|219122202|ref|XP_002181440.1|1.547e-6561.45predicted protein, partial [Phaeodactylum tricornu... [more]
gi|299471763|emb|CBN76984.1|4.984e-6560.49conserved unknown protein [Ectocarpus siliculosus][more]
gi|1191056655|ref|XP_020906412.1|1.593e-6352.38adenylate kinase isoenzyme 6-like [Exaiptasia pall... [more]
gi|223997586|ref|XP_002288466.1|1.676e-6359.04hypothetical protein THAPSDRAFT_32766 [Thalassiosi... [more]
gi|397612891|gb|EJK61934.1|3.565e-6361.08hypothetical protein THAOC_17484 [Thalassiosira oc... [more]
gi|1183422110|gb|ORY46443.1|2.254e-5949.44P-loop containing nucleoside triphosphate hydrolas... [more]
gi|1046803723|gb|OCL09654.1|5.879e-5952.07P-loop containing nucleoside triphosphate hydrolas... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6237rna6237Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications