rna6232, rna6232 (mRNA) Nannochloropsis gaditana

Overview
Namerna6232
Unique Namerna6232
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length863
Alignment locationCM002468.1:33688..34906 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101327g3.10296.mrna
Orig protein idgnl|cribi|Naga_101327g3.10296
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:33688..34906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101327g3gene6021Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6232rna6232-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24456.1cds6217Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6232 ID=rna6232|Name=rna6232|organism=Nannochloropsis gaditana|type=mRNA|length=863bp
TTGTCTTCTCGACAGTTCAAGCCTTTAAATTTGCCTCTTGTCATGATAAG
TGCGCATTCACTCACTCGATATTTTCAAATCTGCCAGACCATAGAGCGCT
AGGAGGAACTCGGATGAAACGCCGTCGGGCATCGACGTTCCTCCTGGCCC
TTCCCAGAGCACTTTTCCTGTCATTGCTTTCTCTCCCCTACTCTGCACAC
GCCGGCTTTTTTCGTCATGACCCTCCGCCTGCACCAGGAGAGTGTACTTA
TGTCGAAAATATTTACATAGAGGATGCGGTCAATGCTCTGGCCAAATGCG
TGGAGGTTAGCCCCGATGGCATCAGGAATGCCTTGCAAAAGCAGACAGAC
AAAGATGGCGAATATATCCTGGGTGAACTGTACTTAAAAAACCTGAACGA
GTGCCTAGAAAAGGTGAAAAAGGACGGGGGCTCCTACAACTTGGACGACA
AATGCAACAAGTACGTGGAAGACTTTCAGGCCACCGGGGACAGCAGCAAC
GGCAAAGAGGCAGGAGGCATTGTGGCGAAGAAGATGATGTACAACACCGA
TAAATTCTGCTACTGTATGGCAACTATTGACCCTTCGGAGATTTTCTGCT
ACGGTTTGGGTGTGGCACCGGCTATCAAGTCGATTCGCGACACCTGTGAC
CTTCTGGACTACAAATACGTCCAAAAAGTGCTCACCAAGCCGCCTAAACC
TGTCCCTCCTCCTCCTCCTCCCCCTCCCCCCCCCCGCCCCGGCCCCAACT
CCTCAACATCCCACCGACCCTCCTTCTTCACCCTACCCTCCATCACCGTA
CCCGACTGAAAATCCTCCCTCTCCTTCACCCCCCCCCCCTCCCTCCTCCT
CCGCCTCCTCCAC
back to top

protein sequence of rna6232

>rna6232-protein ID=rna6232-protein|Name=rna6232|organism=Nannochloropsis gaditana|type=polypeptide|length=132bp
PPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSHPRPSPSRSRP
RLWLLHGRAARLLPRREEPLSSSRGEPDGFAHVRRAASASFQVQRRLCGP
AERIGFGRAEGGNCLRLDTATKADARVVNSGA
back to top

mRNA from alignment at CM002468.1:33688..34906+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6232 ID=rna6232|Name=rna6232|organism=Nannochloropsis gaditana|type=mRNA|length=1219bp|location=Sequence derived from alignment at CM002468.1:33688..34906+ (Nannochloropsis gaditana)
cctccctcctcctcctcctcctcctcctcctcctcctcctcctcctcctc
ctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcct
cctcctcctcctcctcccacccccgtccctccccctcccgctcccgcccc
aGGCTCTGGCTACTTCACGGACGCGCAGCTAGGCTGCTACCGCGCCGCGA
AGAACCTCTGTCCTCGAGCAGGGGCGAACCGGATGGCTTTGCTCATGTGC
GCCGAGCAGCAAGTGCGAGCTTTCAGGTACAGCGCCGACTGTGTGGCCCT
GCTGAAAGAATCGGATTTGGACGGGCTGAGGGAGGCAACTGCCTCCGACT
AGACACAGCCACCAAAGCGGACGCTCGTGTGGTCAATTCTGGTGcatgaa
gagggggaggggagggagggctaaAGCCTCGAGCTCGGCGTGTGATGGGG
AAATGTGCTGGCGCACACGGGGAGGGGCTCCTGCTGGTCCAAGAATGATG
AGGTTGTgaggatggggaagaggagggaagaggagggaagacgcggaAGG
TGGCTTTTGTTTTTGTTGAAGAAATAGGGCGgcggtgagagggagggaaa
tggacgagggggggaagcgcgaGGATagcagaggggggggagggcgggag
ggtgggctgatggcaaggagaggggttggagggaagggcattGGAAGCGG
TAGGgtaggagggggtggtgatGTAGAATAGGGGGTAGGAGGCTGAGGTC
GATTGAGGGAGTGTGTGTGCCCCCGCAGGGACCGAACGACCATAAATATG
AAGGGACAGCCCTTGTTGCGATGTGCGAGAAGTGCCGACCGCAGCCAGgg
agcctttcctctccgctTTTTTCATCCGGACGTGAGACTCAGGCCCCGTC
ACTAGTGCAGCCAAAGAGTCGCCCGGGAGGGTTGACGAAAAGATCGGACG
GACCTCCCtcgggcaggaaggaggggcgcggagggaggggtgtgTGGTGG
AAGTGTCGTTTAAGGAGCCGGGCCAGGATGTGGCGGATCGTGGGGTTGAT
AACACGGTTAGTATAGTGGTTGCGTGTGGATGtggatgaaggagggcgat
tTGAATTTAACAAGGTAAACGCTCGTAGACTAggtgccttctccttcctt
tttgaaagaaaaTTTGCGAAGATTGTAAACGGTGGGGAAATGTTCCCAAG
TGCCAATATAAATGGCGAT
back to top

Coding sequence (CDS) from alignment at CM002468.1:33688..34906+

>rna6232 ID=rna6232|Name=rna6232|organism=Nannochloropsis gaditana|type=CDS|length=399bp|location=Sequence derived from alignment at CM002468.1:33688..34906+ (Nannochloropsis gaditana)
cctccctcctcctcctcctcctcctcctcctcctcctcctcctcctcctc
ctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcct
cctcctcctcctcctcccacccccgtccctccccctcccgctcccgcccc
aGGCTCTGGCTACTTCACGGACGCGCAGCTAGGCTGCTACCGCGCCGCGA
AGAACCTCTGTCCTCGAGCAGGGGCGAACCGGATGGCTTTGCTCATGTGC
GCCGAGCAGCAAGTGCGAGCTTTCAGGTACAGCGCCGACTGTGTGGCCCT
GCTGAAAGAATCGGATTTGGACGGGCTGAGGGAGGCAACTGCCTCCGACT
AGACACAGCCACCAAAGCGGACGCTCGTGTGGTCAATTCTGGTGcatga
back to top
Synonyms
Publications