|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100512g3.9605.mrna |
| Orig protein id | gnl|cribi|Naga_100512g3.9605 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:32163..33141 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6231 ID=rna6231|Name=rna6231|organism=Nannochloropsis gaditana|type=mRNA|length=1238bp
ATGCAGTTTCTCGCGCAGCGATTTCCTGCAACGGATCGGGCCCTGCTAGA
CTGGAATTCCTTCTTGTTAATAGGGCCTGTTACCCTTATCGCCGCTGTCC
TTGGTTCGATCCTCAACGTGGTTCTTCCCGAAGCCATAATCTACACCGGC
CTACCTATCATCCTCGCTTTGCTTGCCTGCTACTCGGTTCAGAAGAGCAT
GGAACTTTTTCACTCTGAGGGCGGATGGGCCCACGTGTGTTCTAGACAGA
CAGAATCCAGTGCCTCACAAGGAGGAAGAAATGATAAAAGGGATGGAGGC
AAAATTGTATCTGATAGAGGAGAGAGAAAAACAACGCCTGAGTCCTTCAA
AGAGGAAGCGAAATGCGAGAAAATCGTCGTCGGTATCTCCGATTATGGCA
CCACAAATCGCGCGCCTGCTCCCTCCGCTACACCCTCGTTCGCCTCCTCT
TCGTCCAAGAAGAAGAAAAAGACCCTTCTCGTTCCCGTTGGGGACGGGCT
GCATGGCGGGATGGAGGACGGGATAGAGGGCGAGGTGTGGGCCTCCCCTT
TCCAGGAAACCATCTACACCTTCTCCCCGAGCAAGCCCTCCGAGCCCTCC
CCCACCCACGAGGCAGCGGAAGTCGAAGAAGAGATGACAAGCAAGGACAA
GGACAAATTGCTGTCCCCACCAGCGGACGTACGCATGGCCGTTCAAGGAA
AAAAGGAAGCTAATCTGTGGAAGCCCATGATTCTGGCTGTATGCTTCTTG
GGTGTCGCGTTGACGGAAATGGTGCAGGGCGGACGAGGCTTCCCCTCCCC
CTTTGGTATCTCTTGCGGGTCTTCAACGTACTGGATTCTTACGTTGGGAA
GTATATCTTGGGCCGGCGGCTTTTTCCTCTGGGTCCGACAGTATCTATTA
CTGGACTGTGAAGCCAAGCGACGGGAGGGTCGCATTTTTTCGCCTGGTGA
CGTGCTCTGGACTCCTAAAAATACGCTTCTGTACCCCTTGTGCAGTGCTT
TAGGGGTAAGGGGAGTGAAGTAGTTCACAGGCACGACATTGGGCTGATCA
GCAGACAAGCCCATCGTTGTTCTCCCTTCGATGTCTTGCCTCTCTACGAT
TCAGTCTCCTCCTTTTCACTCATAATGTACCCGTTTTTAATGCATGCAAT
ACGCTAACACAGGGATTGAGCACCTGTGTCTTTGGTGTGGGACACGGCAC
CTGCCAGGGTGAGTCGCACAAAGGAGCTTCCCCACTCA back to topprotein sequence of rna6231 >rna6231-protein ID=rna6231-protein|Name=rna6231|organism=Nannochloropsis gaditana|type=polypeptide|length=231bp
MKRRRASTFLLALPRALFLSLLSLPYSAHAGFFRHDPPPAPGECTYVENI
YIEDAVNALAKCVEVSPDGIRNALQKQTDKDGEYILGELYLKNLNECLEK
VKKDGGSYNLDDKCNKYVEDFQATGDSSNGKEAGGIVAKKMMYNTDKFCY
CMATIDPSEIFCYGLGVAPAIKSIRDTCDLLDYKYVQKVLTKPPKPVPPP
PPPPPPPRPGPNSSTSHRPSFFTLPSITVPD back to topmRNA from alignment at CM002468.1:32163..33141+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6231 ID=rna6231|Name=rna6231|organism=Nannochloropsis gaditana|type=mRNA|length=979bp|location=Sequence derived from alignment at CM002468.1:32163..33141+ (Nannochloropsis gaditana)
TTGTCTTCTCGACAGTTCAAGCCTTTAAATTTGCCTCTTGTCATGATAAG
TGCGCATTCACTCACTCGATATTTTCAAATCTGCCAGACCATAGAGCGCT
AGGAGGAACTCGGATGAAACGCCGTCGGGCATCGACGttcctcctggccc
ttccCAGAGCACTTTTCCTGTCAttgctttctctcccctacTCTGCACAC
GCCGGCTTTTTTCGTCATGACCCTCCGCCTGCACCAGGAGAGTGTACTTA
TGTCGAAAATATTTACATAGAGGATGCGGTCAATGCTCTGGCCAAATGCG
TGGAGGTTAGCCCCGATGGCATCAGGAATGCCTTGCAAAAGCAGACAGAC
AAAGATGGCGAATATATCCTGGGTGAACTGTACTTAAAAAACCTGAACGA
GTGCCTAGAAAAGGTGAAAAAGGACGGGGGCTCCTACAACTTGGACGACA
AATGCAACAAGTACGTGGAAGACTTTCAGGCCACCGGGGACAGCAGCAAC
GGcaaagaggcaggaggcattgtggcgaagaagatgatgTACAACACCGA
TAAATTCTGCTACTGTATGGCAACTATTGACCCTTCGGAGATTTTCTGCT
ACGGTTTGGGTGTGGTACGTGGGTGGGCTCGAGGAGAaccaaggggaaaa
agaccaAAATAtctatctcctcctcattcccttcaACCCcttacttccct
ccctcgctatcctcctcttcaatcCTTTAGGCACCGGCTATCAAGTCGAT
TCGCGACACCTGTGACCTTCTGGACTACAAATACGTCCAAAAAGTGCTCA
CCAAGCCGCCTAaacctgtccctcctcctcctcctccccctccccccccc
cgccccggccccaACTCCTCAACATCCCACcgaccctccttcttcaccct
ACCCTCCATCACCGTACCCGACTGAaaatcctccctctccttcacccccc
ccccctccctcctcctccgcctcctccac back to topCoding sequence (CDS) from alignment at CM002468.1:32163..33141+ >rna6231 ID=rna6231|Name=rna6231|organism=Nannochloropsis gaditana|type=CDS|length=1392bp|location=Sequence derived from alignment at CM002468.1:32163..33141+ (Nannochloropsis gaditana)
ATGAAACGCCGTCGGGCATCGACGttcctcctggcccttccCAGAGCACT
TTTCCTGTCAttgctttctctcccctacTCTGCACACGCCGGCTTTTTTC
GTCATGACCCTCCGCCTGCACCAGGAGAGTGTACTTATGTCGAAAATATT
TACATAGAGGATGCGGTCAATGCTCTGGCCAAATGCGTGGAGGTTAGCCC
CGATGGCATCAGGAATGCCTTGCAAAAGCAGACAGACAAAGATGGCGAAT
ATATCCTGGGTGAACTGTACTTAAAAAACCTGAACGAGTGCCTAGAAAAG
GTGAAAAAGGACGGGGGCTCCTACAACTTGGACGACAAATGCAACAAGTA
CGTGGAAGACTTTCAGGCCACCGGGGACAGCAGCAACGGcaaagaggcag
gaggcattgtggcgaagaagatgatgTACAACACCGATAAATTCTGCTAC
TGTATGGCAACTATTGACCCTTCGGAGATTTTCTGCTACGGTTTGGGTGT
GGCACCGGCTATCAAGTCGATTCGCGACACCTGTGACCTTCTGGACTACA
AATACGTCCAAAAAGTGCTCACCAAGCCGCCTAaacctgtccctcctcct
cctcctccccctccccccccccgccccggccccaACTCCTCAACATCCCA
CcgaccctccttcttcaccctACCCTCCATCACCGTACCCGACTGAATGA
AACGCCGTCGGGCATCGACGttcctcctggcccttccCAGAGCACTTTTC
CTGTCAttgctttctctcccctacTCTGCACACGCCGGCTTTTTTCGTCA
TGACCCTCCGCCTGCACCAGGAGAGTGTACTTATGTCGAAAATATTTACA
TAGAGGATGCGGTCAATGCTCTGGCCAAATGCGTGGAGGTTAGCCCCGAT
GGCATCAGGAATGCCTTGCAAAAGCAGACAGACAAAGATGGCGAATATAT
CCTGGGTGAACTGTACTTAAAAAACCTGAACGAGTGCCTAGAAAAGGTGA
AAAAGGACGGGGGCTCCTACAACTTGGACGACAAATGCAACAAGTACGTG
GAAGACTTTCAGGCCACCGGGGACAGCAGCAACGGcaaagaggcaggagg
cattgtggcgaagaagatgatgTACAACACCGATAAATTCTGCTACTGTA
TGGCAACTATTGACCCTTCGGAGATTTTCTGCTACGGTTTGGGTGTGGCA
CCGGCTATCAAGTCGATTCGCGACACCTGTGACCTTCTGGACTACAAATA
CGTCCAAAAAGTGCTCACCAAGCCGCCTAaacctgtccctcctcctcctc
ctccccctccccccccccgccccggccccaACTCCTCAACATCCCACcga
ccctccttcttcaccctACCCTCCATCACCGTACCCGACTGA back to top
|