rna6227, rna6227 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6227
Unique Name	rna6227
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2840
Alignment location	CM002468.1:15901..17503 +

Link to JBrowse

Properties


Property Name	Value
Product	DNA-binding SAP
Orig transcript id	gnl\|cribi\|Naga_100301g1.10491.mrna
Orig protein id	gnl\|cribi\|Naga_100301g1.10491
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:15901..17503 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100301g1	gene6015	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6227	rna6227-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24461.1	cds6212	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:15901..17503+
coding sequence from alignment at CM002468.1:15901..17503+

mRNA sequence

>rna6227 ID=rna6227|Name=rna6227|organism=Nannochloropsis gaditana|type=mRNA|length=2840bp
AGGACGCCCTATGGCTTCGATAGACAGTGGAGAACCAGCCAAGAAAGAAG
AAAATGCTATCGTCGTGGACGTAGCACCCTTCATCGCGCAAGGGACTCTC
GCCAGCAGCAGAAGAGATGGAGCTCCCCCCACATCAGACGAGACGGACAG
GATTGGCCTCGATGAGCGCATGCGGAGTTATCTCCGTGACTATTTTCTCG
GCTTTGTCCCACCGCATATCCGACGTAAAGGCTTGCAGATGCCGCCCATC
GAGTCCATGGGCCGGAAATTCATCTCCCTTCTCTCCTTCCCCTACCTGCC
CTGGGTTTCCTTCGAGTGGCGGAAGTACGGAAAGCATGCTCCTGCAGACA
TAATGGGTGGCTTGACAGTTGGTATCATGCTCGTGCCACAAGGTATGGCC
TACGCTGCCCTGTCAAACCTACCGCCGATTTACGGACTCTATGCTTCCAC
TATTGCCGGTTACGTTTACACCTTCTTCGGGACGTCGGGACAGCTGACCC
TTGGCCCCGTGGCTCTCGTGTCCCTCTTCATGTCCGAGACCTTCACCAGT
CTTGGCATACCACTGACGGAGAAGGACAAGGACCCTATTCTGAACGCTGA
GGCCCAGTACCACACGTTCGTGCGCGGGCAGATGGCGGCAGTGGTCTCCT
TCGGCGCCGCCGTCTTGCTCTGCGGCATGGCGCTCTTCCGGGTAGGCTCT
CTCATGAAGTTCGTCAGCCCCTCCGTTTTGACGGGATTCGTCACAGGCAG
TGCCGTCTACATTTTCATCTCCCAAAGCAAATATATCTGGGGCTTCAAGA
TCCCCCGGGACACGGTGCAGATCAACGAGTACAGATATTTGATCACGCAC
ATCCGCACGGAAAGCAACAGCACAGCCATGGCCATGGGCCTTACCTCTTT
CTTCGCCCTCTGGTTCCTGAACACACTGCGACGGTCCTCTAGACCTCACA
TCAGCCGCATCCGCACGCGCAAGCCCTGGCTCGCGAACTTCCTGGCCATT
CTCCTCTCCTCCACCACCCTCCTCGTCATCATTGTCGCGACAGCCGTCTC
CTATTACCTCATCCAAAACGGAATGGAACTTGAAATTATAGGCAAAGTCC
CCGCCGGCTTCAATAAGTTCGAATACCCCGCGCTGAACAACGATTTTTAT
GGAGAGGGTATCCCCTTCGGCAAGGTCATGATCTGCGCCCTTCCTATAGC
ACTTCTTACCTATCTCGAGTCTGTCTCAGTGGCGAGGAAGTACGCCCTCT
ACAACAAATATGCCCTCGACATGACACAAGAGCTCTGGGCATTGGGCTTC
GGCTGTCTTTTTGCCTCTTTCTTCAAAGCCTACCCCCCTGGAGGCTCTTT
CTCTCGAACTGCCCTTCAGCACGAGGTTGGTGTCAAGACCCCTCTGGCCA
ATGTGGTCACCTCCCTCTTCGTCACAATGGTCCTCGTCGCAGCCACATCC
CTTCTGGAATTTGTTCCTAAGGCCGTCCTGGGTGCGATTATCTGCACCTG
CATCATGTCCCTCTTCGATTTCCACGACATGTGGCGGGCGTTGTGGGTAG
CACCCGTGGATTTCCTGGTCATGATTTTCACCTTCCTCGTGACTGTCCTC
TACAACGTGGAGCGGGGCCTCGAGTACGGTATCATCGCTTCGGTAGTCAT
CCTCCTGCTCCAGCTTTCAAAGCTGGACATGGACTCGATCGGCCAGCTAC
GCGTCGCAGATGACGAAGTGGAGATGCTCGTTGATCCGAAAGCAGGGACC
CAGTTTCGTCCTCTTGACAACTACCCCTCCGCGCGGCAGCATCCATCTAT
CAAAGTCCTGCGATTGCGGGCAAATCTCTTTTTTGGTAATGTCTCCATGT
TCCGTGATGAATTCTACGCCTCCTTGGTGGAAGTTGGCAGCGCAATAAAG
GCGGTCATCATCGACGCGTCTGGAGTCGTGGAGATGGATTTGAGCGCCCT
GGCTGTAATAGATGAGCTCGTGAACGAAATGCAGAAGCAGCAGGTGGAGG
TCTTCATCGCCTCGGCGTCCACGCGCGTGGTCAAGTCCCTGGAGGCCTAC
GACCTTCTGGACGACGTGGGAGGTCTGCCCTTGGTGCAGCTGGAGGTGGA
GGATGTCTTCTGGGCCGTTCTTGAGGATCTGAGTAAGTGGCTGTCGTGCA
TACTTTTACCCTGTTCAACCCTCTTTGTGCTCGCTTGTCGGTTCGAGCCT
ACCCAGGATGGTCGGAGAAGCTCTTTACGTGCTGCCTCAGGTGAAACCCT
CACAAAGGATACATACCCTTTACGACAGACCTCGAGGAAGCCCAAAATGC
CCCACAGCGACCACGCTCCAATTCGGCATCGCAAGCCTTAGCCGAGCACC
GGGCACATAGCGCGGGCGCCTCGTGCACGAATGGCTTTTACAGTCAGGGC
TCGAAGAACAGCCCGTTGAATCGAGAAGAAAAAGTTGACGACATTTTTTA
AGGGAGAAGGGTGGAAAAAGGTAGAGAGGAGGCTTTTTATGATGGACAGG
AGCAGGGATGACAGGTGGCCAAAAATCCATGTTAGCACCACCCTGCGTGT
CATTGAAAAAAGGCTACGCGTGCACGTGTGCCGTAATAGGCTCGCGTACA
CATCGCATGTAAGAGTGACAGTCGACGGCAGGATGGTAGCCAGGACTTTG
TGAATATGCGCATTAAAAAGTCGGACAAACTGATATAGGTCCCCCCTTAT
TTGGGTGATAATACGCGGTTGAATGGTAAGTTCTCGCTTGCGGTAGCCTG
TCCGTGAAAATGGAACTGAAAGTAAAGCATATTAGCATTGAAACGACTAC
CATGTTACAGAAAGAATAAAAATTCATGTGCGTCCTTTGA

protein sequence of rna6227

>rna6227-protein ID=rna6227-protein|Name=rna6227|organism=Nannochloropsis gaditana|type=polypeptide|length=292bp
MASYLVLLLLVAALAASAATRLTRGSAFLHPAVYRRRARPNSPQWHSEVR
PARTAWIRTAVSLSLSLRVHDLDGLTVDQLKDALRRRGLPLSGRKVDLLS
RLRADIAQGQREDRPGWMLNLEGEEEGGLVGQGVEGKDEEEGEETLEDRL
VAALAAEVVRLGAQEGEGGRPARGVLGRGEYEKVAVLQRASSLQPASSSQ
GAAERSIERRNTSGSHQTGSSQPPLLDASPPLPTAPSREAGQDMEDLYVS
SLPDYPTDLPRHKISKRHVGWDGALEGYTLADGTYVGIKVRV

mRNA from alignment at CM002468.1:15901..17503+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6227 ID=rna6227|Name=rna6227|organism=Nannochloropsis gaditana|type=mRNA|length=1603bp|location=Sequence derived from alignment at CM002468.1:15901..17503+ (Nannochloropsis gaditana)
GAATGGCATCGTATCTCGTCCTTTTGCTGTTGGTGGCTGCATTGGCAGCG
TCAGCCGCGACAAGATTGACGAGGGGCAGCGCCTTCTTACATCCCGCGGT
TTACCGACGACGAGGTAGGCCCTCTACCTGAGGCAAGGAGACCCAAACCC
CTGACTCATATTGCATGTAACGAcccatctctcccttcctctttcttgcc
ccCTACCAGCCCGTCCAAACTCGCCTCAGTGGCACTCTGAGGTCCGTCCT
GCCCGTACGGCGTGGATTCGGACGGCTGTgtcgctctctctctcgctgCG
GGTGCACGACTTGGACGGTTTGACCGTGGACCAGCTCAAGGACGTAAGTG
GATGCCcacgaaggagagagggaggcggaaagagGTGTGGGAATGGAATG
CAGTCCTGAGAAGGCATGTCGGGGCAGTCAGCATTGCTTGGAGATAGCCG
GACACACGAAAATTGAGTGGTGGATTAGGCCGTAGGACCGACGGACTACT
ACTGATCTGATACACTACGCCCTTTTGAACCGAGAGTTCAGTGCTGACCA
CGCGACAAAGTGTctcatcttcccctctctcttcgccCGCACCTCGGTCC
CCGCCCCAggccctccgccgtcgcGGACTGCCCTTGTCGGGGCGAAAGGT
CGACCTCTTGAGCCGCTTGCGTGCGGACATGTGCGTAGCGGGGATGGGag
tcgagaaggagggcagggaaggagagggggcaggggtcAGGAAGGCTGTC
TCGGATCTCTTCATTCTTTGTGGAAATCGGCTGTTGCACTGCCTcattcc
tgcctttccttgcACGCCTGTCTTTCTCAGAGCccaggggcagagggagg
atcgCCCCGGATGGATGCTCAatctggagggggaggaggaggggggattg
GTCGGGCAAGGGgtcgaagggaaggatgaagaggagggagaggagacgcT
GGAGGATCGATTGGTTGCGGCTTTGGCTGCTGAAGTGGTGAGGCTAGGGG
cacaagagggagagggcggaaggccGGCAAGGGGGGTCTTAGGGCGAGGA
GAGTACGAGAAGGTAGCAGTCCTTCAGGTACTGGTGTGAAGAATGCGTGA
GAGGGAGCTCGACCCCTTCCTGTGGGAGCAGAGGCCACAGGCCCTGTCCG
TCCTGACGGCTTTCAATCGaacgcctcctcgcccgacTTCCATGTGTGGC
CCTCCCAGACGATCCGCCTCGCCATTTATTCCCCCTGTGTCGTACCAGTG
AGGCATCCGTTCTCATTCCCCGCTCCGTCTCCTTGCAGCGGGCAAGCTCC
CTCcagcctgcttcctcttcacaggGAGCCGCCGAGAGGAGCATAGAGAG
GCGCAACACCAGCGGCAGCCACCAAACTGGCTCTTCGcagcccccccttc
tcgatgcttcccctcctttgcccaccgccccctcgcGCGAGGCCGggcag
gacatggaggacctgtacgtctcctccctccccgactaCCCCaccgacct
cccccgccacaaAATCTCCAAACGGCACGTGGGCTGGGACGGGGCACTGG
AGGGCTACACCCTGGCAGACGGGACCTACGTAGGCATCAAGGTGCGGgtg
tag

Coding sequence (CDS) from alignment at CM002468.1:15901..17503+

>rna6227 ID=rna6227|Name=rna6227|organism=Nannochloropsis gaditana|type=CDS|length=4395bp|location=Sequence derived from alignment at CM002468.1:15901..17503+ (Nannochloropsis gaditana)
ATGGCATCGTATCTCGTCCTTTTGCTGTTGGTGGCTGCATTGGCAGCGTC
AGCCGCGACAAGATTGACGAGGGGCAGCGCCTTCTTACATCCCGCGGTTT
ACCGACGACGAGCCCGTCCAAACTCGCCTCAGTGGCACTCTGAGGTCCGT
CCTGCCCGTACGGCGTGGATTCGGACGGCTGTgtcgctctctctctcgct
gCGGGTGCACGACTTGGACGGTTTGACCGTGGACCAGCTCAAGGACgccc
tccgccgtcgcGGACTGCCCTTGTCGGGGCGAAAGGTCGACCTCTTGAGC
CGCTTGCGTGCGGACATAGCccaggggcagagggaggatcgCCCCGGATG
GATGCTCAatctggagggggaggaggaggggggattgGTCGGGCAAGGGg
tcgaagggaaggatgaagaggagggagaggagacgcTGGAGGATCGATTG
GTTGCGGCTTTGGCTGCTGAAGTGGTGAGGCTAGGGGcacaagagggaga
gggcggaaggccGGCAAGGGGGGTCTTAGGGCGAGGAGAGTACGAGAAGG
TAGCAGTCCTTCAGCGGGCAAGCTCCCTCcagcctgcttcctcttcacag
gGAGCCGCCGAGAGGAGCATAGAGAGGCGCAACACCAGCGGCAGCCACCA
AACTGGCTCTTCGcagcccccccttctcgatgcttcccctcctttgccca
ccgccccctcgcGCGAGGCCGggcaggacatggaggacctgtacgtctcc
tccctccccgactaCCCCaccgacctcccccgccacaaAATCTCCAAACG
GCACGTGGGCTGGGACGGGGCACTGGAGGGCTACACCCTGGCAGACGGGA
CCTACGTAGGCATCAAGGTGCGGgtgtagATGGCATCGTATCTCGTCCTT
TTGCTGTTGGTGGCTGCATTGGCAGCGTCAGCCGCGACAAGATTGACGAG
GGGCAGCGCCTTCTTACATCCCGCGGTTTACCGACGACGAGCCCGTCCAA
ACTCGCCTCAGTGGCACTCTGAGGTCCGTCCTGCCCGTACGGCGTGGATT
CGGACGGCTGTgtcgctctctctctcgctgCGGGTGCACGACTTGGACGG
TTTGACCGTGGACCAGCTCAAGGACgccctccgccgtcgcGGACTGCCCT
TGTCGGGGCGAAAGGTCGACCTCTTGAGCCGCTTGCGTGCGGACATAGCc
caggggcagagggaggatcgCCCCGGATGGATGCTCAatctggaggggga
ggaggaggggggattgGTCGGGCAAGGGgtcgaagggaaggatgaagagg
agggagaggagacgcTGGAGGATCGATTGGTTGCGGCTTTGGCTGCTGAA
GTGGTGAGGCTAGGGGcacaagagggagagggcggaaggccGGCAAGGGG
GGTCTTAGGGCGAGGAGAGTACGAGAAGGTAGCAGTCCTTCAGCGGGCAA
GCTCCCTCcagcctgcttcctcttcacaggGAGCCGCCGAGAGGAGCATA
GAGAGGCGCAACACCAGCGGCAGCCACCAAACTGGCTCTTCGcagccccc
ccttctcgatgcttcccctcctttgcccaccgccccctcgcGCGAGGCCG
ggcaggacatggaggacctgtacgtctcctccctccccgactaCCCCacc
gacctcccccgccacaaAATCTCCAAACGGCACGTGGGCTGGGACGGGGC
ACTGGAGGGCTACACCCTGGCAGACGGGACCTACGTAGGCATCAAGGTGC
GGgtgtagATGGCATCGTATCTCGTCCTTTTGCTGTTGGTGGCTGCATTG
GCAGCGTCAGCCGCGACAAGATTGACGAGGGGCAGCGCCTTCTTACATCC
CGCGGTTTACCGACGACGAGCCCGTCCAAACTCGCCTCAGTGGCACTCTG
AGGTCCGTCCTGCCCGTACGGCGTGGATTCGGACGGCTGTgtcgctctct
ctctcgctgCGGGTGCACGACTTGGACGGTTTGACCGTGGACCAGCTCAA
GGACgccctccgccgtcgcGGACTGCCCTTGTCGGGGCGAAAGGTCGACC
TCTTGAGCCGCTTGCGTGCGGACATAGCccaggggcagagggaggatcgC
CCCGGATGGATGCTCAatctggagggggaggaggaggggggattgGTCGG
GCAAGGGgtcgaagggaaggatgaagaggagggagaggagacgcTGGAGG
ATCGATTGGTTGCGGCTTTGGCTGCTGAAGTGGTGAGGCTAGGGGcacaa
gagggagagggcggaaggccGGCAAGGGGGGTCTTAGGGCGAGGAGAGTA
CGAGAAGGTAGCAGTCCTTCAGCGGGCAAGCTCCCTCcagcctgcttcct
cttcacaggGAGCCGCCGAGAGGAGCATAGAGAGGCGCAACACCAGCGGC
AGCCACCAAACTGGCTCTTCGcagcccccccttctcgatgcttcccctcc
tttgcccaccgccccctcgcGCGAGGCCGggcaggacatggaggacctgt
acgtctcctccctccccgactaCCCCaccgacctcccccgccacaaAATC
TCCAAACGGCACGTGGGCTGGGACGGGGCACTGGAGGGCTACACCCTGGC
AGACGGGACCTACGTAGGCATCAAGGTGCGGgtgtagATGGCATCGTATC
TCGTCCTTTTGCTGTTGGTGGCTGCATTGGCAGCGTCAGCCGCGACAAGA
TTGACGAGGGGCAGCGCCTTCTTACATCCCGCGGTTTACCGACGACGAGC
CCGTCCAAACTCGCCTCAGTGGCACTCTGAGGTCCGTCCTGCCCGTACGG
CGTGGATTCGGACGGCTGTgtcgctctctctctcgctgCGGGTGCACGAC
TTGGACGGTTTGACCGTGGACCAGCTCAAGGACgccctccgccgtcgcGG
ACTGCCCTTGTCGGGGCGAAAGGTCGACCTCTTGAGCCGCTTGCGTGCGG
ACATAGCccaggggcagagggaggatcgCCCCGGATGGATGCTCAatctg
gagggggaggaggaggggggattgGTCGGGCAAGGGgtcgaagggaagga
tgaagaggagggagaggagacgcTGGAGGATCGATTGGTTGCGGCTTTGG
CTGCTGAAGTGGTGAGGCTAGGGGcacaagagggagagggcggaaggccG
GCAAGGGGGGTCTTAGGGCGAGGAGAGTACGAGAAGGTAGCAGTCCTTCA
GCGGGCAAGCTCCCTCcagcctgcttcctcttcacaggGAGCCGCCGAGA
GGAGCATAGAGAGGCGCAACACCAGCGGCAGCCACCAAACTGGCTCTTCG
cagcccccccttctcgatgcttcccctcctttgcccaccgccccctcgcG
CGAGGCCGggcaggacatggaggacctgtacgtctcctccctccccgact
aCCCCaccgacctcccccgccacaaAATCTCCAAACGGCACGTGGGCTGG
GACGGGGCACTGGAGGGCTACACCCTGGCAGACGGGACCTACGTAGGCAT
CAAGGTGCGGgtgtagATGGCATCGTATCTCGTCCTTTTGCTGTTGGTGG
CTGCATTGGCAGCGTCAGCCGCGACAAGATTGACGAGGGGCAGCGCCTTC
TTACATCCCGCGGTTTACCGACGACGAGCCCGTCCAAACTCGCCTCAGTG
GCACTCTGAGGTCCGTCCTGCCCGTACGGCGTGGATTCGGACGGCTGTgt
cgctctctctctcgctgCGGGTGCACGACTTGGACGGTTTGACCGTGGAC
CAGCTCAAGGACgccctccgccgtcgcGGACTGCCCTTGTCGGGGCGAAA
GGTCGACCTCTTGAGCCGCTTGCGTGCGGACATAGCccaggggcagaggg
aggatcgCCCCGGATGGATGCTCAatctggagggggaggaggagggggga
ttgGTCGGGCAAGGGgtcgaagggaaggatgaagaggagggagaggagac
gcTGGAGGATCGATTGGTTGCGGCTTTGGCTGCTGAAGTGGTGAGGCTAG
GGGcacaagagggagagggcggaaggccGGCAAGGGGGGTCTTAGGGCGA
GGAGAGTACGAGAAGGTAGCAGTCCTTCAGCGGGCAAGCTCCCTCcagcc
tgcttcctcttcacaggGAGCCGCCGAGAGGAGCATAGAGAGGCGCAACA
CCAGCGGCAGCCACCAAACTGGCTCTTCGcagcccccccttctcgatgct
tcccctcctttgcccaccgccccctcgcGCGAGGCCGggcaggacatgga
ggacctgtacgtctcctccctccccgactaCCCCaccgacctcccccgcc
acaaAATCTCCAAACGGCACGTGGGCTGGGACGGGGCACTGGAGGGCTAC
ACCCTGGCAGACGGGACCTACGTAGGCATCAAGGTGCGGgtgtag

Synonyms

Publications